Wall clock time and date at job start Mon Mar 8 2021 09:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99895 * 2 1 4 4 H 1.09001 * 112.84813 * 18.80518 * 3 2 1 5 5 C 1.53783 * 113.61576 * 149.99670 * 3 2 1 6 6 C 1.53777 * 87.07934 * 140.06923 * 5 3 2 7 7 H 1.08997 * 113.61504 * 89.20395 * 6 5 3 8 8 C 1.53005 * 113.61214 * 220.02362 * 6 5 3 9 9 C 1.53004 * 109.47044 * 183.47105 * 8 6 5 10 10 N 1.46499 * 109.47094 * 179.97438 * 9 8 6 11 11 S 1.65597 * 119.99926 * 165.27799 * 10 9 8 12 12 O 1.42096 * 106.40195 * 178.26439 * 11 10 9 13 13 O 1.42108 * 106.40105 * 311.18495 * 11 10 9 14 14 C 1.76199 * 107.22117 * 64.72196 * 11 10 9 15 15 C 1.33392 * 125.20480 * 179.72040 * 14 11 10 16 16 C 1.50697 * 122.54129 * 0.02562 * 15 14 11 17 17 O 1.42904 * 109.46802 * 74.99837 * 16 15 14 18 18 Si 1.86292 * 109.47321 * 195.00070 * 16 15 14 19 19 C 1.38425 * 114.91605 * 179.86231 * 15 14 11 20 20 C 1.33380 * 114.92623 * 0.42711 * 19 15 14 21 21 S 1.75886 * 109.59392 * 359.77167 * 20 19 15 22 22 C 1.53778 * 87.17352 * 334.61244 * 6 5 3 23 23 H 1.09004 * 109.47067 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47015 * 299.99665 * 1 2 3 25 25 H 1.09007 * 109.47107 * 60.00106 * 1 2 3 26 26 H 1.08998 * 113.60902 * 25.52147 * 5 3 2 27 27 H 1.09000 * 113.69282 * 254.63363 * 5 3 2 28 28 H 1.08994 * 109.47357 * 63.47433 * 8 6 5 29 29 H 1.09002 * 109.47067 * 303.46661 * 8 6 5 30 30 H 1.09007 * 109.47007 * 59.99772 * 9 8 6 31 31 H 1.08995 * 109.47080 * 300.00016 * 9 8 6 32 32 H 0.97001 * 119.99790 * 344.99588 * 10 9 8 33 33 H 1.08999 * 109.46502 * 315.00364 * 16 15 14 34 34 H 0.96701 * 113.99414 * 180.02562 * 17 16 15 35 35 H 1.48504 * 110.00252 * 178.67978 * 18 16 15 36 36 H 1.48496 * 110.00067 * 300.00202 * 18 16 15 37 37 H 1.08007 * 122.53299 * 180.20325 * 19 15 14 38 38 H 1.08007 * 125.20794 * 179.79305 * 20 19 15 39 39 H 1.09001 * 113.61512 * 139.94055 * 22 6 5 40 40 H 1.09006 * 113.61721 * 270.84259 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 0.3238 5 6 3.3755 1.3720 0.7046 6 6 3.8219 2.3200 -0.4209 7 1 3.6220 3.3709 -0.2116 8 6 5.2537 2.0715 -0.8998 9 6 5.6278 3.1163 -1.9530 10 7 6.9989 2.8787 -2.4111 11 16 7.5488 3.6091 -3.7918 12 8 8.9063 3.2162 -3.9402 13 8 6.5605 3.3814 -4.7872 14 6 7.5632 5.3455 -3.4931 15 6 7.9507 6.2734 -4.3696 16 6 8.4333 5.9286 -5.7550 17 8 7.3176 5.5683 -6.5720 18 14 9.2960 7.4035 -6.4971 19 6 7.8726 7.5773 -3.9114 20 6 7.4301 7.7077 -2.6599 21 16 7.0760 6.1200 -1.9910 22 6 2.7530 1.6534 -1.3028 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8901 26 1 3.9094 0.4218 0.7125 27 1 3.3395 1.8454 1.6858 28 1 5.3231 1.0750 -1.3359 29 1 5.9377 2.1467 -0.0545 30 1 5.5583 4.1129 -1.5169 31 1 4.9438 3.0412 -2.7983 32 1 7.5858 2.2968 -1.9034 33 1 9.1285 5.0909 -5.6994 34 1 7.5545 5.3331 -7.4796 35 1 9.8046 7.0664 -7.8510 36 1 8.3587 8.5524 -6.5782 37 1 8.1523 8.4246 -4.5200 38 1 7.3077 8.6449 -2.1372 39 1 2.2136 2.3542 -1.9401 40 1 3.1164 0.7802 -1.8447 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16488028_13652106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:44:57 Heat of formation + Delta-G solvation = -87.379388 kcal Electronic energy + Delta-G solvation = -24748.471616 eV Core-core repulsion = 20977.892620 eV Total energy + Delta-G solvation = -3770.578996 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.079 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.54084 -39.96585 -38.43535 -37.75631 -37.39633 -37.07717 -36.31382 -31.53092 -31.19601 -28.15259 -27.66210 -26.67943 -25.21882 -24.20709 -22.71101 -21.66418 -20.55597 -19.91506 -19.65308 -18.80672 -18.25783 -17.56534 -17.47037 -17.29944 -16.58333 -16.32476 -16.14184 -15.91703 -15.85818 -15.71201 -15.29607 -14.68916 -14.29663 -14.22916 -14.03213 -13.71019 -13.54097 -13.37150 -13.36022 -13.28097 -13.23704 -13.06007 -12.79992 -12.60142 -12.46628 -12.37917 -12.26287 -11.72923 -11.62721 -11.35979 -11.23318 -10.73264 -10.66621 -10.40886 -10.39098 -9.61014 -5.00116 -0.83147 -0.67292 0.20863 0.63854 1.12944 1.22526 1.55751 1.84030 1.84913 2.44889 2.90529 3.14433 3.41324 3.52566 3.65715 3.69449 3.82115 3.83836 3.91200 3.96539 4.09817 4.16851 4.24633 4.25578 4.44858 4.48277 4.53363 4.64018 4.67664 4.71296 4.83124 4.86558 4.89440 4.90845 4.98338 5.05770 5.09492 5.17876 5.30092 5.49780 5.91777 6.32854 6.40206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.049 3.951 4 H 0.099 0.901 5 C -0.129 4.129 6 C -0.100 4.100 7 H 0.114 0.886 8 C -0.109 4.109 9 C 0.107 3.893 10 N -1.108 6.108 11 S 2.725 3.275 12 O -0.981 6.981 13 O -0.968 6.968 14 C -0.799 4.799 15 C 0.037 3.963 16 C -0.138 4.138 17 O -0.544 6.544 18 Si 0.799 3.201 19 C -0.177 4.177 20 C -0.152 4.152 21 S 0.240 5.760 22 C -0.161 4.161 23 H 0.089 0.911 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.432 0.568 33 H 0.080 0.920 34 H 0.397 0.603 35 H -0.277 1.277 36 H -0.269 1.269 37 H 0.172 0.828 38 H 0.215 0.785 39 H 0.073 0.927 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.055 5.186 6.106 8.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.324 6.324 3 C -0.008 4.008 4 H 0.117 0.883 5 C -0.167 4.167 6 C -0.119 4.119 7 H 0.132 0.868 8 C -0.148 4.148 9 C -0.019 4.019 10 N -0.873 5.873 11 S 2.812 3.188 12 O -0.971 6.971 13 O -0.957 6.957 14 C -1.001 5.001 15 C 0.020 3.980 16 C -0.246 4.246 17 O -0.354 6.354 18 Si 0.698 3.302 19 C -0.206 4.206 20 C -0.289 4.289 21 S 0.506 5.494 22 C -0.198 4.198 23 H 0.107 0.893 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.101 0.899 27 H 0.104 0.896 28 H 0.090 0.910 29 H 0.113 0.887 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.270 0.730 33 H 0.098 0.902 34 H 0.248 0.752 35 H -0.204 1.204 36 H -0.195 1.195 37 H 0.189 0.811 38 H 0.231 0.769 39 H 0.092 0.908 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.695 4.900 6.581 8.235 hybrid contribution -0.263 -0.027 -1.867 1.886 sum -0.958 4.873 4.714 6.847 Atomic orbital electron populations 1.22918 0.80163 1.03458 1.00640 1.87914 1.20966 1.28801 1.94758 1.23984 0.94580 0.84940 0.97345 0.88273 1.23249 0.94652 1.00163 0.98594 1.22280 0.93258 1.00280 0.96052 0.86756 1.21709 0.96538 0.98413 0.98147 1.21651 0.80383 1.00589 0.99267 1.55282 1.22544 1.62615 1.46871 1.00814 0.72717 0.72487 0.72817 1.93573 1.36112 1.81905 1.85515 1.93602 1.61349 1.84224 1.56568 1.35521 1.25920 1.29385 1.09258 1.18187 0.93306 0.92997 0.93533 1.25545 0.94025 1.12919 0.92123 1.86647 1.31865 1.89536 1.27367 0.93628 0.82548 0.73466 0.80526 1.20441 1.05980 0.96543 0.97653 1.26632 1.00516 1.03418 0.98312 1.83776 1.60594 0.96661 1.08399 1.23681 0.98130 1.00835 0.97180 0.89274 0.92990 0.93562 0.89857 0.89646 0.91012 0.88734 0.90058 0.90819 0.72959 0.90220 0.75168 1.20368 1.19457 0.81083 0.76858 0.90813 0.90356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.01 10.85 113.37 1.23 1.22 16 2 O -0.41 -1.94 10.72 -148.98 -1.60 -3.54 16 3 C 0.05 -0.02 4.31 31.18 0.13 0.12 16 4 H 0.10 -0.33 7.87 -2.39 -0.02 -0.35 16 5 C -0.13 0.38 7.48 31.12 0.23 0.61 16 6 C -0.10 0.50 3.64 -10.27 -0.04 0.46 16 7 H 0.11 -0.94 8.14 -2.39 -0.02 -0.96 16 8 C -0.11 0.57 5.18 30.60 0.16 0.73 16 9 C 0.11 -0.28 5.96 86.38 0.51 0.24 16 10 N -1.11 0.17 5.81 -187.48 -1.09 -0.92 16 11 S 2.72 22.00 5.07 -56.49 -0.29 21.72 16 12 O -0.98 -12.43 17.48 -128.00 -2.24 -14.67 16 13 O -0.97 -14.41 16.94 -125.86 -2.13 -16.54 16 14 C -0.80 -4.27 6.45 66.72 0.43 -3.84 16 15 C 0.04 0.20 5.16 -20.92 -0.11 0.09 16 16 C -0.14 -0.73 2.32 71.23 0.17 -0.56 16 17 O -0.54 -4.52 12.30 -148.36 -1.82 -6.35 16 18 Si 0.80 -0.82 30.42 68.60 2.09 1.27 16 19 C -0.18 0.04 8.74 21.21 0.19 0.22 16 20 C -0.15 0.64 11.23 66.72 0.75 1.39 16 21 S 0.24 -0.57 21.05 -56.49 -1.19 -1.76 16 22 C -0.16 0.15 7.48 31.18 0.23 0.38 16 23 H 0.09 -0.14 8.14 -2.38 -0.02 -0.16 16 24 H 0.05 -0.13 8.14 -2.39 -0.02 -0.15 16 25 H 0.05 -0.07 8.14 -2.38 -0.02 -0.09 16 26 H 0.08 -0.07 8.10 -2.39 -0.02 -0.09 16 27 H 0.08 -0.44 8.14 -2.39 -0.02 -0.46 16 28 H 0.07 -0.25 7.87 -2.39 -0.02 -0.27 16 29 H 0.09 -0.79 8.14 -2.39 -0.02 -0.81 16 30 H 0.08 -0.50 6.22 -2.38 -0.01 -0.51 16 31 H 0.07 0.02 7.76 -2.39 -0.02 0.00 16 32 H 0.43 -1.98 8.65 -96.74 -0.84 -2.81 16 33 H 0.08 0.42 7.23 -2.39 -0.02 0.41 16 34 H 0.40 0.05 8.74 -74.06 -0.65 -0.59 16 35 H -0.28 -0.75 7.11 99.48 0.71 -0.04 16 36 H -0.27 -0.59 6.86 99.48 0.68 0.09 16 37 H 0.17 -0.72 5.57 -2.91 -0.02 -0.74 16 38 H 0.21 -2.53 8.06 -2.91 -0.02 -2.55 16 39 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 40 H 0.08 0.16 7.92 -2.38 -0.02 0.14 16 Total: 0.00 -25.03 353.54 -4.78 -29.81 By element: Atomic # 1 Polarization: -9.68 SS G_CDS: -0.40 Total: -10.07 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: 3.89 Total: 1.06 kcal Atomic # 7 Polarization: 0.17 SS G_CDS: -1.09 Total: -0.92 kcal Atomic # 8 Polarization: -33.31 SS G_CDS: -7.79 Total: -41.10 kcal Atomic # 14 Polarization: -0.82 SS G_CDS: 2.09 Total: 1.27 kcal Atomic # 16 Polarization: 21.43 SS G_CDS: -1.48 Total: 19.96 kcal Total: -25.03 -4.78 -29.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16488028_13652106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.574 kcal (2) G-P(sol) polarization free energy of solvation -25.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds