Wall clock time and date at job start Mon Mar 8 2021 09:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00332 * 2 1 4 4 H 1.08997 * 112.85191 * 18.80472 * 3 2 1 5 5 C 1.53781 * 113.61435 * 150.00454 * 3 2 1 6 6 C 1.53787 * 87.08025 * 139.98300 * 5 3 2 7 7 H 1.08998 * 113.61691 * 89.19545 * 6 5 3 8 8 C 1.52999 * 113.61402 * 220.01885 * 6 5 3 9 9 C 1.53000 * 109.47142 * 185.00017 * 8 6 5 10 10 N 1.46505 * 109.47049 * 179.97438 * 9 8 6 11 11 S 1.65593 * 120.00018 * 165.49597 * 10 9 8 12 12 O 1.42101 * 106.40288 * 309.63388 * 11 10 9 13 13 O 1.42099 * 106.40531 * 176.71237 * 11 10 9 14 14 C 1.76203 * 107.21780 * 63.17338 * 11 10 9 15 15 C 1.33376 * 122.54106 * 67.30531 * 14 11 10 16 16 C 1.50706 * 125.20227 * 0.02562 * 15 14 11 17 17 O 1.42895 * 109.46949 * 318.21558 * 16 15 14 18 18 Si 1.86307 * 109.46959 * 198.21897 * 16 15 14 19 19 S 1.75888 * 109.59576 * 179.97438 * 15 14 11 20 20 C 1.75880 * 90.96839 * 359.82656 * 19 15 14 21 21 C 1.33396 * 109.59331 * 0.30530 * 20 19 15 22 22 C 1.53778 * 87.08054 * 334.56683 * 6 5 3 23 23 H 1.08998 * 109.46243 * 299.99682 * 1 2 3 24 24 H 1.08996 * 109.46949 * 59.99966 * 1 2 3 25 25 H 1.08998 * 109.47176 * 180.02562 * 1 2 3 26 26 H 1.08990 * 113.61640 * 25.43576 * 5 3 2 27 27 H 1.09000 * 113.60942 * 254.52512 * 5 3 2 28 28 H 1.09001 * 109.47461 * 64.99516 * 8 6 5 29 29 H 1.09001 * 109.46821 * 305.00000 * 8 6 5 30 30 H 1.08997 * 109.46912 * 60.00029 * 9 8 6 31 31 H 1.08994 * 109.46945 * 299.99894 * 9 8 6 32 32 H 0.97001 * 119.99943 * 345.49766 * 10 9 8 33 33 H 1.08996 * 109.47426 * 78.21840 * 16 15 14 34 34 H 0.96706 * 114.00281 * 180.02562 * 17 16 15 35 35 H 1.48497 * 110.00021 * 298.67906 * 18 16 15 36 36 H 1.48501 * 110.00086 * 60.00170 * 18 16 15 37 37 H 1.08005 * 125.20268 * 180.17774 * 20 19 15 38 38 H 1.07996 * 122.53584 * 179.90481 * 21 20 19 39 39 H 1.09000 * 113.61443 * 139.98806 * 22 6 5 40 40 H 1.09006 * 113.61313 * 270.88451 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3139 2.0788 0.3238 5 6 3.3757 1.3717 0.7044 6 6 3.8228 2.3180 -0.4223 7 1 3.6236 3.3693 -0.2144 8 6 5.2543 2.0678 -0.9009 9 6 5.6425 3.1338 -1.9275 10 7 7.0135 2.8946 -2.3853 11 16 7.5779 3.6566 -3.7428 12 8 6.6097 3.4353 -4.7591 13 8 8.9425 3.2827 -3.8748 14 6 7.5660 5.3873 -3.4126 15 6 8.3736 5.9517 -2.5136 16 6 9.3856 5.2171 -1.6726 17 8 8.8167 3.9932 -1.2035 18 14 9.8690 6.2752 -0.2173 19 16 8.0777 7.6848 -2.4607 20 6 6.8409 7.5417 -3.7030 21 6 6.7181 6.2642 -4.0669 22 6 2.7535 1.6488 -1.3018 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.9089 0.4212 0.7136 27 1 3.3386 1.8469 1.6847 28 1 5.3167 1.0813 -1.3602 29 1 5.9352 2.1167 -0.0511 30 1 5.5802 4.1203 -1.4681 31 1 4.9616 3.0850 -2.7771 32 1 7.5906 2.2898 -1.8932 33 1 10.2688 5.0005 -2.2735 34 1 9.4135 3.4672 -0.6537 35 1 10.4911 7.5375 -0.6914 36 1 8.6735 6.5776 0.6102 37 1 6.2670 8.3623 -4.1076 38 1 6.0138 5.9395 -4.8185 39 1 2.2141 2.3477 -1.9412 40 1 3.1166 0.7739 -1.8411 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16488028_14772022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:45:01 Heat of formation + Delta-G solvation = -80.592423 kcal Electronic energy + Delta-G solvation = -25295.339178 eV Core-core repulsion = 21525.054488 eV Total energy + Delta-G solvation = -3770.284691 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.079 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.57346 -39.56244 -38.20451 -37.74170 -37.38297 -36.62080 -36.03301 -32.00693 -31.05759 -27.66502 -27.50347 -26.71514 -25.13419 -24.27525 -22.61698 -21.73172 -20.63635 -19.82045 -18.99787 -18.63309 -18.16281 -17.80124 -17.50639 -16.99442 -16.50598 -16.26633 -16.16473 -15.76635 -15.73801 -15.24371 -15.05921 -14.94782 -14.49460 -14.21373 -13.87978 -13.73661 -13.48413 -13.38382 -13.18393 -12.96293 -12.90169 -12.80764 -12.79582 -12.60012 -12.42141 -12.30048 -12.17435 -11.76837 -11.74344 -11.35621 -11.25634 -10.88292 -10.38331 -10.27514 -10.12993 -9.79456 -5.38825 -0.58782 -0.39038 0.28876 0.63133 0.94439 1.14272 1.40320 1.71099 2.23140 2.81896 2.87886 3.04836 3.44947 3.48361 3.58773 3.63055 3.79998 3.85003 4.03665 4.07915 4.16666 4.20742 4.27134 4.33197 4.41207 4.48021 4.55459 4.60274 4.67213 4.77409 4.79999 4.83030 4.85872 4.89395 4.97480 5.07236 5.12037 5.19623 5.28096 5.42213 6.22418 6.26122 6.31051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.378 6.378 3 C 0.058 3.942 4 H 0.086 0.914 5 C -0.131 4.131 6 C -0.109 4.109 7 H 0.094 0.906 8 C -0.110 4.110 9 C 0.122 3.878 10 N -1.089 6.089 11 S 2.723 3.277 12 O -0.964 6.964 13 O -0.954 6.954 14 C -0.662 4.662 15 C -0.052 4.052 16 C -0.068 4.068 17 O -0.543 6.543 18 Si 0.688 3.312 19 S 0.131 5.869 20 C -0.210 4.210 21 C -0.075 4.075 22 C -0.153 4.153 23 H 0.041 0.959 24 H 0.042 0.958 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.420 0.580 33 H 0.110 0.890 34 H 0.395 0.605 35 H -0.237 1.237 36 H -0.237 1.237 37 H 0.176 0.824 38 H 0.161 0.839 39 H 0.070 0.930 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.418 1.516 5.683 5.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.297 6.297 3 C 0.000 4.000 4 H 0.104 0.896 5 C -0.168 4.168 6 C -0.128 4.128 7 H 0.112 0.888 8 C -0.149 4.149 9 C -0.005 4.005 10 N -0.852 5.852 11 S 2.808 3.192 12 O -0.954 6.954 13 O -0.945 6.945 14 C -0.761 4.761 15 C -0.173 4.173 16 C -0.180 4.180 17 O -0.352 6.352 18 Si 0.586 3.414 19 S 0.394 5.606 20 C -0.346 4.346 21 C -0.104 4.104 22 C -0.191 4.191 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.104 0.896 26 H 0.111 0.889 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.257 0.743 33 H 0.127 0.873 34 H 0.246 0.754 35 H -0.161 1.161 36 H -0.160 1.160 37 H 0.194 0.806 38 H 0.178 0.822 39 H 0.088 0.912 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.617 3.353 5.698 6.640 hybrid contribution -0.943 -0.338 -0.743 1.247 sum -0.325 3.014 4.955 5.809 Atomic orbital electron populations 1.22801 0.81082 1.02917 0.99939 1.87952 1.19731 1.27380 1.94592 1.23737 0.93932 0.85316 0.97025 0.89605 1.23274 0.95361 1.00350 0.97857 1.22279 0.94169 0.99379 0.97023 0.88772 1.21677 0.95710 0.99043 0.98468 1.21236 0.81697 0.98997 0.98542 1.55206 1.21277 1.60126 1.48578 1.01148 0.73187 0.72438 0.72424 1.93583 1.62724 1.84222 1.54827 1.93559 1.33958 1.81580 1.85371 1.30028 1.08239 1.28737 1.09048 1.23686 0.98676 0.97532 0.97375 1.24459 0.96085 0.92555 1.04890 1.86374 1.44041 1.32474 1.72276 0.94462 0.85351 0.80450 0.81124 1.84471 1.34709 1.03558 1.37849 1.25908 1.03870 1.01227 1.03551 1.19817 0.98851 0.91383 1.00303 1.23636 0.97357 1.01079 0.97032 0.94027 0.93977 0.89601 0.88885 0.90936 0.90673 0.90632 0.92210 0.90637 0.74290 0.87274 0.75427 1.16102 1.15997 0.80627 0.82190 0.91162 0.88844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 10.85 101.05 1.10 1.09 16 2 O -0.38 -0.85 10.71 -35.23 -0.38 -1.23 16 3 C 0.06 0.01 4.31 -25.92 -0.11 -0.10 16 4 H 0.09 -0.08 7.87 -51.93 -0.41 -0.49 16 5 C -0.13 0.11 7.47 -25.92 -0.19 -0.08 16 6 C -0.11 0.18 3.65 -89.81 -0.33 -0.15 16 7 H 0.09 -0.21 8.13 -51.93 -0.42 -0.63 16 8 C -0.11 0.22 5.19 -26.73 -0.14 0.08 16 9 C 0.12 -0.11 6.19 -4.04 -0.02 -0.13 16 10 N -1.09 0.41 4.16 -10.61 -0.04 0.37 16 11 S 2.72 7.97 4.91 -107.50 -0.53 7.44 16 12 O -0.96 -5.63 16.88 -57.17 -0.97 -6.60 16 13 O -0.95 -4.62 16.56 -63.63 -1.05 -5.67 16 14 C -0.66 -1.62 5.74 -41.21 -0.24 -1.86 16 15 C -0.05 -0.08 5.77 -36.00 -0.21 -0.29 16 16 C -0.07 0.08 2.14 36.01 0.08 0.16 16 17 O -0.54 1.62 7.86 -49.01 -0.39 1.24 16 18 Si 0.69 -1.71 31.14 -169.99 -5.29 -7.01 16 19 S 0.13 0.16 20.80 -107.50 -2.24 -2.08 16 20 C -0.21 -0.17 11.23 29.04 0.33 0.16 16 21 C -0.08 -0.15 9.70 -41.21 -0.40 -0.54 16 22 C -0.15 0.06 7.46 -25.92 -0.19 -0.13 16 23 H 0.04 -0.04 8.14 -51.93 -0.42 -0.47 16 24 H 0.04 -0.03 8.14 -51.93 -0.42 -0.46 16 25 H 0.09 -0.08 8.14 -51.93 -0.42 -0.50 16 26 H 0.09 -0.03 8.10 -51.93 -0.42 -0.45 16 27 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 28 H 0.07 -0.12 7.84 -51.93 -0.41 -0.53 16 29 H 0.08 -0.21 8.14 -51.93 -0.42 -0.64 16 30 H 0.06 -0.07 8.14 -51.93 -0.42 -0.49 16 31 H 0.08 -0.01 7.80 -51.93 -0.41 -0.41 16 32 H 0.42 -1.02 7.55 -34.46 -0.26 -1.28 16 33 H 0.11 -0.19 7.93 -51.93 -0.41 -0.60 16 34 H 0.40 -3.11 8.74 45.56 0.40 -2.71 16 35 H -0.24 0.05 7.11 56.52 0.40 0.45 16 36 H -0.24 -0.06 7.11 56.52 0.40 0.35 16 37 H 0.18 -0.31 8.06 -52.48 -0.42 -0.73 16 38 H 0.16 0.16 7.74 -52.49 -0.41 -0.25 16 39 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 40 H 0.09 0.04 7.90 -51.93 -0.41 -0.37 16 LS Contribution 351.59 15.07 5.30 5.30 Total: 0.00 -9.61 351.59 -11.65 -21.26 By element: Atomic # 1 Polarization: -5.47 SS G_CDS: -5.73 Total: -11.20 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -0.34 Total: -1.81 kcal Atomic # 7 Polarization: 0.41 SS G_CDS: -0.04 Total: 0.37 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -2.78 Total: -12.26 kcal Atomic # 14 Polarization: -1.71 SS G_CDS: -5.29 Total: -7.01 kcal Atomic # 16 Polarization: 8.13 SS G_CDS: -2.76 Total: 5.36 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -9.61 -11.65 -21.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16488028_14772022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.334 kcal (2) G-P(sol) polarization free energy of solvation -9.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds