Wall clock time and date at job start Mon Mar 8 2021 09:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00332 * 2 1 4 4 H 1.08997 * 112.85191 * 18.80472 * 3 2 1 5 5 C 1.53781 * 113.61435 * 150.00454 * 3 2 1 6 6 C 1.53787 * 87.08025 * 139.98300 * 5 3 2 7 7 H 1.08998 * 113.61691 * 89.19545 * 6 5 3 8 8 C 1.52999 * 113.61402 * 220.01885 * 6 5 3 9 9 C 1.53000 * 109.47142 * 185.00017 * 8 6 5 10 10 N 1.46505 * 109.47049 * 179.97438 * 9 8 6 11 11 S 1.65593 * 120.00018 * 165.49597 * 10 9 8 12 12 O 1.42101 * 106.40288 * 309.63388 * 11 10 9 13 13 O 1.42099 * 106.40531 * 176.71237 * 11 10 9 14 14 C 1.76203 * 107.21780 * 63.17338 * 11 10 9 15 15 C 1.33376 * 122.54106 * 67.30531 * 14 11 10 16 16 C 1.50706 * 125.20227 * 0.02562 * 15 14 11 17 17 O 1.42895 * 109.46949 * 318.21558 * 16 15 14 18 18 Si 1.86307 * 109.46959 * 198.21897 * 16 15 14 19 19 S 1.75888 * 109.59576 * 179.97438 * 15 14 11 20 20 C 1.75880 * 90.96839 * 359.82656 * 19 15 14 21 21 C 1.33396 * 109.59331 * 0.30530 * 20 19 15 22 22 C 1.53778 * 87.08054 * 334.56683 * 6 5 3 23 23 H 1.08998 * 109.46243 * 299.99682 * 1 2 3 24 24 H 1.08996 * 109.46949 * 59.99966 * 1 2 3 25 25 H 1.08998 * 109.47176 * 180.02562 * 1 2 3 26 26 H 1.08990 * 113.61640 * 25.43576 * 5 3 2 27 27 H 1.09000 * 113.60942 * 254.52512 * 5 3 2 28 28 H 1.09001 * 109.47461 * 64.99516 * 8 6 5 29 29 H 1.09001 * 109.46821 * 305.00000 * 8 6 5 30 30 H 1.08997 * 109.46912 * 60.00029 * 9 8 6 31 31 H 1.08994 * 109.46945 * 299.99894 * 9 8 6 32 32 H 0.97001 * 119.99943 * 345.49766 * 10 9 8 33 33 H 1.08996 * 109.47426 * 78.21840 * 16 15 14 34 34 H 0.96706 * 114.00281 * 180.02562 * 17 16 15 35 35 H 1.48497 * 110.00021 * 298.67906 * 18 16 15 36 36 H 1.48501 * 110.00086 * 60.00170 * 18 16 15 37 37 H 1.08005 * 125.20268 * 180.17774 * 20 19 15 38 38 H 1.07996 * 122.53584 * 179.90481 * 21 20 19 39 39 H 1.09000 * 113.61443 * 139.98806 * 22 6 5 40 40 H 1.09006 * 113.61313 * 270.88451 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3139 2.0788 0.3238 5 6 3.3757 1.3717 0.7044 6 6 3.8228 2.3180 -0.4223 7 1 3.6236 3.3693 -0.2144 8 6 5.2543 2.0678 -0.9009 9 6 5.6425 3.1338 -1.9275 10 7 7.0135 2.8946 -2.3853 11 16 7.5779 3.6566 -3.7428 12 8 6.6097 3.4353 -4.7591 13 8 8.9425 3.2827 -3.8748 14 6 7.5660 5.3873 -3.4126 15 6 8.3736 5.9517 -2.5136 16 6 9.3856 5.2171 -1.6726 17 8 8.8167 3.9932 -1.2035 18 14 9.8690 6.2752 -0.2173 19 16 8.0777 7.6848 -2.4607 20 6 6.8409 7.5417 -3.7030 21 6 6.7181 6.2642 -4.0669 22 6 2.7535 1.6488 -1.3018 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 3.9089 0.4212 0.7136 27 1 3.3386 1.8469 1.6847 28 1 5.3167 1.0813 -1.3602 29 1 5.9352 2.1167 -0.0511 30 1 5.5802 4.1203 -1.4681 31 1 4.9616 3.0850 -2.7771 32 1 7.5906 2.2898 -1.8932 33 1 10.2688 5.0005 -2.2735 34 1 9.4135 3.4672 -0.6537 35 1 10.4911 7.5375 -0.6914 36 1 8.6735 6.5776 0.6102 37 1 6.2670 8.3623 -4.1076 38 1 6.0138 5.9395 -4.8185 39 1 2.2141 2.3477 -1.9412 40 1 3.1166 0.7739 -1.8411 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16488028_14772022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:45:00 Heat of formation + Delta-G solvation = -82.269495 kcal Electronic energy + Delta-G solvation = -25295.411902 eV Core-core repulsion = 21525.054488 eV Total energy + Delta-G solvation = -3770.357414 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.079 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.52717 -39.56551 -38.42437 -37.72614 -37.35172 -36.93340 -36.03879 -32.00383 -31.01546 -27.64277 -27.51734 -26.65882 -25.10686 -24.29048 -22.55624 -21.83078 -20.58312 -19.94838 -18.95605 -18.66932 -18.17771 -17.87789 -17.52041 -17.04632 -16.51777 -16.23498 -16.09630 -15.85929 -15.73523 -15.22271 -15.12872 -14.94160 -14.46899 -14.22014 -13.91204 -13.78021 -13.44407 -13.34278 -13.26510 -13.14748 -13.13182 -12.89367 -12.81189 -12.72383 -12.36499 -12.23964 -12.13110 -11.87997 -11.69664 -11.29932 -11.17579 -10.78168 -10.38542 -10.26483 -10.19035 -9.83654 -5.19932 -0.69485 -0.53493 0.22168 0.56900 0.99922 1.12602 1.56716 1.85588 2.12300 2.71489 2.91503 3.09608 3.42522 3.55430 3.62913 3.68653 3.85987 3.92301 4.03495 4.14418 4.21484 4.23332 4.35241 4.40305 4.47107 4.53538 4.60355 4.63999 4.71108 4.79241 4.82641 4.85169 4.88479 4.94590 5.03657 5.04610 5.15479 5.25691 5.37117 5.52731 6.32960 6.34583 6.76693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.404 6.404 3 C 0.049 3.951 4 H 0.097 0.903 5 C -0.129 4.129 6 C -0.100 4.100 7 H 0.105 0.895 8 C -0.104 4.104 9 C 0.120 3.880 10 N -1.077 6.077 11 S 2.734 3.266 12 O -0.999 6.999 13 O -0.977 6.977 14 C -0.675 4.675 15 C -0.060 4.060 16 C -0.080 4.080 17 O -0.549 6.549 18 Si 0.779 3.221 19 S 0.124 5.876 20 C -0.206 4.206 21 C -0.095 4.095 22 C -0.158 4.158 23 H 0.050 0.950 24 H 0.046 0.954 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.431 0.569 33 H 0.116 0.884 34 H 0.417 0.583 35 H -0.269 1.269 36 H -0.272 1.272 37 H 0.199 0.801 38 H 0.163 0.837 39 H 0.071 0.929 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.740 1.844 6.879 7.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C -0.009 4.009 4 H 0.114 0.886 5 C -0.166 4.166 6 C -0.119 4.119 7 H 0.123 0.877 8 C -0.143 4.143 9 C -0.006 4.006 10 N -0.842 5.842 11 S 2.820 3.180 12 O -0.989 6.989 13 O -0.968 6.968 14 C -0.774 4.774 15 C -0.181 4.181 16 C -0.191 4.191 17 O -0.362 6.362 18 Si 0.680 3.320 19 S 0.386 5.614 20 C -0.341 4.341 21 C -0.123 4.123 22 C -0.195 4.195 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.108 0.892 26 H 0.104 0.896 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.109 0.891 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.270 0.730 33 H 0.133 0.867 34 H 0.272 0.728 35 H -0.195 1.195 36 H -0.197 1.197 37 H 0.216 0.784 38 H 0.180 0.820 39 H 0.090 0.910 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.959 3.623 6.889 7.842 hybrid contribution -1.073 -0.418 -1.087 1.584 sum -0.115 3.205 5.802 6.629 Atomic orbital electron populations 1.22916 0.80186 1.03487 1.00591 1.87912 1.20939 1.28712 1.94770 1.23947 0.94526 0.84913 0.97493 0.88552 1.23251 0.94679 1.00236 0.98442 1.22253 0.93865 0.99714 0.96097 0.87694 1.21638 0.95822 0.98305 0.98552 1.21312 0.80989 0.99831 0.98496 1.54913 1.21644 1.59825 1.47815 1.00507 0.72245 0.72594 0.72605 1.93538 1.63517 1.84965 1.56875 1.93517 1.35020 1.82198 1.86020 1.29934 1.09257 1.28286 1.09964 1.24106 0.98771 0.97844 0.97358 1.24688 0.95419 0.93553 1.05452 1.86317 1.44953 1.32087 1.72843 0.93429 0.82452 0.77923 0.78194 1.84504 1.35035 1.03642 1.38175 1.26198 1.03476 1.01482 1.02937 1.19969 0.99428 0.91938 1.00916 1.23636 0.97995 1.00828 0.97070 0.93117 0.93553 0.89176 0.89615 0.90025 0.91097 0.89087 0.91506 0.91689 0.72976 0.86657 0.72841 1.19475 1.19743 0.78386 0.81998 0.90998 0.90087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.00 10.85 113.37 1.23 1.23 16 2 O -0.40 -2.03 10.71 -148.98 -1.60 -3.62 16 3 C 0.05 0.02 4.31 31.12 0.13 0.15 16 4 H 0.10 -0.22 7.87 -2.39 -0.02 -0.24 16 5 C -0.13 0.27 7.47 31.12 0.23 0.50 16 6 C -0.10 0.37 3.65 -10.27 -0.04 0.34 16 7 H 0.10 -0.59 8.13 -2.39 -0.02 -0.61 16 8 C -0.10 0.47 5.19 30.59 0.16 0.63 16 9 C 0.12 -0.22 6.19 86.38 0.53 0.31 16 10 N -1.08 0.82 4.16 -187.49 -0.78 0.04 16 11 S 2.73 18.25 4.91 -56.49 -0.28 17.97 16 12 O -1.00 -13.21 16.88 -128.00 -2.16 -15.37 16 13 O -0.98 -10.08 16.56 -121.83 -2.02 -12.10 16 14 C -0.67 -3.71 5.74 21.21 0.12 -3.58 16 15 C -0.06 -0.20 5.77 24.59 0.14 -0.06 16 16 C -0.08 0.23 2.14 71.24 0.15 0.38 16 17 O -0.55 3.81 7.86 -135.80 -1.07 2.74 16 18 Si 0.78 -4.35 31.14 68.60 2.14 -2.21 16 19 S 0.12 0.31 20.80 -56.49 -1.18 -0.87 16 20 C -0.21 -0.33 11.23 66.72 0.75 0.42 16 21 C -0.09 -0.43 9.70 21.22 0.21 -0.22 16 22 C -0.16 0.06 7.46 31.12 0.23 0.29 16 23 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 24 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 25 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 26 H 0.09 -0.05 8.10 -2.39 -0.02 -0.07 16 27 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 28 H 0.07 -0.23 7.84 -2.39 -0.02 -0.25 16 29 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 30 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 31 H 0.06 0.04 7.80 -2.39 -0.02 0.02 16 32 H 0.43 -2.33 7.55 -96.75 -0.73 -3.06 16 33 H 0.12 -0.46 7.93 -2.39 -0.02 -0.48 16 34 H 0.42 -7.28 8.74 -74.05 -0.65 -7.92 16 35 H -0.27 0.11 7.11 99.48 0.71 0.82 16 36 H -0.27 -0.07 7.11 99.48 0.71 0.64 16 37 H 0.20 -0.81 8.06 -2.91 -0.02 -0.84 16 38 H 0.16 0.53 7.74 -2.91 -0.02 0.51 16 39 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 40 H 0.08 0.17 7.90 -2.38 -0.02 0.15 16 Total: 0.00 -22.68 351.59 -3.36 -26.04 By element: Atomic # 1 Polarization: -12.74 SS G_CDS: -0.28 Total: -13.02 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: 3.86 Total: 0.39 kcal Atomic # 7 Polarization: 0.82 SS G_CDS: -0.78 Total: 0.04 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -6.84 Total: -28.35 kcal Atomic # 14 Polarization: -4.35 SS G_CDS: 2.14 Total: -2.21 kcal Atomic # 16 Polarization: 18.56 SS G_CDS: -1.45 Total: 17.11 kcal Total: -22.68 -3.36 -26.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16488028_14772022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.225 kcal (2) G-P(sol) polarization free energy of solvation -22.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds