Wall clock time and date at job start Mon Mar 8 2021 09:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 114.00278 * 2 1 4 4 H 1.09005 * 112.84472 * 341.18659 * 3 2 1 5 5 C 1.53948 * 113.74700 * 112.39639 * 3 2 1 6 6 C 1.53780 * 87.01697 * 139.94155 * 5 3 2 7 7 H 1.09002 * 113.61333 * 89.23025 * 6 5 3 8 8 C 1.53006 * 113.61448 * 220.04552 * 6 5 3 9 9 C 1.53001 * 109.47082 * 274.14305 * 8 6 5 10 10 N 1.46506 * 109.46880 * 180.02562 * 9 8 6 11 11 S 1.65596 * 119.99896 * 164.99589 * 10 9 8 12 12 O 1.42105 * 106.40014 * 178.53648 * 11 10 9 13 13 O 1.42095 * 106.40457 * 311.45917 * 11 10 9 14 14 C 1.76209 * 107.21674 * 65.00043 * 11 10 9 15 15 C 1.33387 * 122.54040 * 90.02171 * 14 11 10 16 16 S 1.75877 * 109.59364 * 180.02562 * 15 14 11 17 17 C 1.75883 * 90.97069 * 359.97438 * 16 15 14 18 18 C 1.50697 * 125.20332 * 179.97438 * 17 16 15 19 19 O 1.42897 * 109.47622 * 245.02698 * 18 17 16 20 20 Si 1.86306 * 109.47290 * 5.02798 * 18 17 16 21 21 C 1.33385 * 109.59263 * 359.73167 * 17 16 15 22 22 C 1.53780 * 113.60975 * 209.99979 * 3 2 1 23 23 H 1.08994 * 109.47259 * 300.01125 * 1 2 3 24 24 H 1.09001 * 109.46422 * 60.00287 * 1 2 3 25 25 H 1.08995 * 109.47193 * 180.02562 * 1 2 3 26 26 H 1.09000 * 113.61139 * 25.42247 * 5 3 2 27 27 H 1.08995 * 113.66591 * 254.47317 * 5 3 2 28 28 H 1.09006 * 109.46703 * 34.14222 * 8 6 5 29 29 H 1.08996 * 109.46775 * 154.13574 * 8 6 5 30 30 H 1.08999 * 109.46661 * 299.99336 * 9 8 6 31 31 H 1.09002 * 109.47248 * 59.99810 * 9 8 6 32 32 H 0.97003 * 119.99586 * 344.99196 * 10 9 8 33 33 H 1.08008 * 125.20050 * 359.97438 * 15 14 11 34 34 H 1.09007 * 109.47082 * 125.02853 * 18 17 16 35 35 H 0.96705 * 114.00055 * 60.00106 * 19 18 17 36 36 H 1.48497 * 109.99574 * 58.67781 * 20 18 17 37 37 H 1.48502 * 110.00048 * 179.97438 * 20 18 17 38 38 H 1.08010 * 122.54123 * 180.23873 * 21 17 16 39 39 H 1.08994 * 113.61871 * 105.38796 * 22 3 2 40 40 H 1.08997 * 113.61428 * 334.47284 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3138 2.0789 -0.3240 5 6 2.7530 1.6534 1.3028 6 6 3.8221 2.3198 0.4209 7 1 3.6223 3.3707 0.2115 8 6 5.2538 2.0713 0.8999 9 6 5.6278 3.1161 1.9531 10 7 6.9990 2.8785 2.4113 11 16 7.8028 4.0506 3.2612 12 8 9.0761 3.5092 3.5852 13 8 7.6345 5.2599 2.5344 14 6 6.9501 4.2650 4.7883 15 6 7.2517 3.5650 5.8829 16 16 6.1944 4.0489 7.2024 17 6 5.3785 5.2095 6.1628 18 6 4.2445 6.1075 6.5854 19 8 3.0620 5.7523 5.8660 20 14 3.9427 5.9084 8.4130 21 6 5.9206 5.1770 4.9444 22 6 3.3756 1.3717 -0.7045 23 1 -0.3633 0.5140 0.8898 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 3.1163 0.7802 1.8448 27 1 2.2137 2.3542 1.9401 28 1 5.3231 1.0747 1.3361 29 1 5.9378 2.1462 0.0546 30 1 5.5585 4.1126 1.5169 31 1 4.9437 3.0411 2.7984 32 1 7.4358 2.0345 2.2169 33 1 8.0263 2.8151 5.9486 34 1 4.5028 7.1445 6.3706 35 1 2.7730 4.8407 6.0098 36 1 5.1749 6.2442 9.1707 37 1 2.8269 6.7893 8.8425 38 1 5.5792 5.8112 4.1395 39 1 3.3384 1.8455 -1.6854 40 1 3.9095 0.4215 -0.7123 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16488028_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:45:04 Heat of formation + Delta-G solvation = -91.080407 kcal Electronic energy + Delta-G solvation = -24543.317928 eV Core-core repulsion = 20772.578444 eV Total energy + Delta-G solvation = -3770.739484 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.079 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -40.62519 -39.54047 -38.26083 -37.75895 -37.60686 -36.84366 -36.26616 -31.88594 -31.23592 -27.71867 -27.27202 -26.78072 -25.26661 -24.94930 -22.71618 -21.45294 -20.76966 -20.05506 -19.26296 -18.50359 -17.93447 -17.72800 -17.59400 -17.14144 -16.66525 -16.41866 -16.27742 -15.99356 -15.72673 -15.40876 -15.20817 -14.90143 -14.33257 -14.20368 -14.03436 -13.98597 -13.72395 -13.44597 -13.23766 -13.14055 -13.01204 -12.92887 -12.92007 -12.60296 -12.50770 -12.34614 -12.25511 -11.81150 -11.69128 -11.49823 -11.30789 -10.75360 -10.62704 -10.42960 -10.24848 -9.91068 -5.30794 -0.75555 -0.50727 0.26557 0.52546 0.97091 1.07719 1.46260 1.77872 2.04992 2.72672 2.82963 3.17387 3.30754 3.40951 3.53631 3.57525 3.73461 3.78420 3.79397 3.89375 4.06627 4.13699 4.19890 4.30291 4.35844 4.43369 4.44230 4.50614 4.56892 4.64461 4.74005 4.76931 4.78951 4.84960 4.86939 4.98583 5.01979 5.06442 5.19417 5.34906 5.84444 6.26517 6.33120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.378 6.378 3 C 0.058 3.942 4 H 0.087 0.913 5 C -0.152 4.152 6 C -0.109 4.109 7 H 0.097 0.903 8 C -0.113 4.113 9 C 0.116 3.884 10 N -1.115 6.115 11 S 2.710 3.290 12 O -0.956 6.956 13 O -0.949 6.949 14 C -0.688 4.688 15 C -0.081 4.081 16 S 0.157 5.843 17 C -0.229 4.229 18 C -0.026 4.026 19 O -0.532 6.532 20 Si 0.656 3.344 21 C -0.044 4.044 22 C -0.132 4.132 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.420 0.580 33 H 0.186 0.814 34 H 0.127 0.873 35 H 0.380 0.620 36 H -0.238 1.238 37 H -0.231 1.231 38 H 0.157 0.843 39 H 0.073 0.927 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.629 -3.754 1.510 6.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.297 6.297 3 C 0.000 4.000 4 H 0.105 0.895 5 C -0.190 4.190 6 C -0.129 4.129 7 H 0.116 0.884 8 C -0.152 4.152 9 C -0.010 4.010 10 N -0.876 5.876 11 S 2.796 3.204 12 O -0.946 6.946 13 O -0.939 6.939 14 C -0.787 4.787 15 C -0.220 4.220 16 S 0.421 5.579 17 C -0.347 4.347 18 C -0.140 4.140 19 O -0.337 6.337 20 Si 0.555 3.445 21 C -0.073 4.073 22 C -0.169 4.169 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.104 0.896 26 H 0.110 0.890 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.255 0.745 33 H 0.203 0.797 34 H 0.144 0.856 35 H 0.228 0.772 36 H -0.162 1.162 37 H -0.154 1.154 38 H 0.174 0.826 39 H 0.092 0.908 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.033 -2.686 3.434 5.939 hybrid contribution -0.105 0.361 -1.383 1.433 sum -4.139 -2.326 2.051 5.171 Atomic orbital electron populations 1.22804 0.81032 1.02919 0.99991 1.87950 1.19770 1.27376 1.94584 1.23762 0.93963 0.85345 0.96917 0.89510 1.23642 0.97358 1.00898 0.97071 1.22286 0.93807 0.99689 0.97090 0.88441 1.21716 0.96187 0.98909 0.98423 1.21383 0.80976 1.00595 0.98076 1.55520 1.26502 1.34233 1.71391 1.01566 0.72594 0.73236 0.72956 1.93616 1.37128 1.79232 1.84661 1.93605 1.85986 1.44474 1.69843 1.30058 1.16361 1.10216 1.22095 1.25911 1.00850 1.00304 0.94965 1.84345 1.27400 1.32635 1.13553 1.25053 1.05844 1.05783 0.98013 1.24450 0.82839 0.98688 1.08011 1.86548 1.40841 1.34912 1.71428 0.95156 0.83545 0.91485 0.74300 1.19628 0.92869 0.96899 0.97881 1.23276 0.95354 1.00296 0.98021 0.93972 0.93963 0.89611 0.89036 0.91074 0.90708 0.90499 0.89979 0.91396 0.74497 0.79679 0.85611 0.77235 1.16224 1.15408 0.82573 0.90779 0.88928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.85 101.05 1.10 1.07 16 2 O -0.38 -0.52 10.72 -35.23 -0.38 -0.90 16 3 C 0.06 -0.04 4.31 -25.83 -0.11 -0.16 16 4 H 0.09 -0.15 7.87 -51.93 -0.41 -0.56 16 5 C -0.15 0.30 7.48 -25.83 -0.19 0.10 16 6 C -0.11 0.28 3.64 -89.80 -0.33 -0.04 16 7 H 0.10 -0.29 8.14 -51.93 -0.42 -0.72 16 8 C -0.11 0.34 5.18 -26.73 -0.14 0.20 16 9 C 0.12 -0.29 6.22 -4.04 -0.03 -0.31 16 10 N -1.12 2.14 6.00 -10.61 -0.06 2.08 16 11 S 2.71 2.93 5.80 -107.50 -0.62 2.31 16 12 O -0.96 -3.60 17.64 -57.17 -1.01 -4.61 16 13 O -0.95 -4.05 17.10 -57.17 -0.98 -5.03 16 14 C -0.69 -0.14 5.86 -41.21 -0.24 -0.38 16 15 C -0.08 0.07 10.70 29.04 0.31 0.38 16 16 S 0.16 -0.23 20.60 -107.50 -2.21 -2.44 16 17 C -0.23 0.12 5.70 -36.01 -0.21 -0.09 16 18 C -0.03 0.03 2.96 36.00 0.11 0.14 16 19 O -0.53 0.60 12.88 -35.23 -0.45 0.15 16 20 Si 0.66 -1.11 30.98 -169.99 -5.27 -6.38 16 21 C -0.04 -0.02 9.59 -41.21 -0.40 -0.41 16 22 C -0.13 0.19 7.48 -25.92 -0.19 0.00 16 23 H 0.04 -0.07 8.14 -51.93 -0.42 -0.50 16 24 H 0.04 -0.07 8.14 -51.93 -0.42 -0.49 16 25 H 0.09 -0.14 8.14 -51.93 -0.42 -0.57 16 26 H 0.09 -0.13 7.92 -51.93 -0.41 -0.54 16 27 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 28 H 0.07 -0.24 7.88 -51.93 -0.41 -0.65 16 29 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 30 H 0.08 -0.16 7.75 -51.93 -0.40 -0.56 16 31 H 0.07 -0.24 8.14 -51.93 -0.42 -0.66 16 32 H 0.42 -1.51 8.65 -34.47 -0.30 -1.81 16 33 H 0.19 -0.51 8.00 -52.48 -0.42 -0.93 16 34 H 0.13 -0.10 7.96 -51.92 -0.41 -0.51 16 35 H 0.38 -1.92 8.70 45.56 0.40 -1.53 16 36 H -0.24 -0.14 7.11 56.52 0.40 0.26 16 37 H -0.23 -0.23 7.11 56.52 0.40 0.18 16 38 H 0.16 0.02 7.96 -52.48 -0.42 -0.40 16 39 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 40 H 0.09 -0.08 8.10 -51.93 -0.42 -0.50 16 LS Contribution 361.81 15.07 5.45 5.45 Total: 0.00 -9.53 361.81 -11.63 -21.16 By element: Atomic # 1 Polarization: -6.49 SS G_CDS: -5.78 Total: -12.27 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -0.32 Total: 0.48 kcal Atomic # 7 Polarization: 2.14 SS G_CDS: -0.06 Total: 2.08 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -2.82 Total: -10.40 kcal Atomic # 14 Polarization: -1.11 SS G_CDS: -5.27 Total: -6.38 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -2.84 Total: -0.13 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -9.53 -11.63 -21.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16488028_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.918 kcal (2) G-P(sol) polarization free energy of solvation -9.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds