Wall clock time and date at job start Mon Mar 8 2021 09:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 114.00278 * 2 1 4 4 H 1.09005 * 112.84472 * 341.18659 * 3 2 1 5 5 C 1.53948 * 113.74700 * 112.39639 * 3 2 1 6 6 C 1.53780 * 87.01697 * 139.94155 * 5 3 2 7 7 H 1.09002 * 113.61333 * 89.23025 * 6 5 3 8 8 C 1.53006 * 113.61448 * 220.04552 * 6 5 3 9 9 C 1.53001 * 109.47082 * 274.14305 * 8 6 5 10 10 N 1.46506 * 109.46880 * 180.02562 * 9 8 6 11 11 S 1.65596 * 119.99896 * 164.99589 * 10 9 8 12 12 O 1.42105 * 106.40014 * 178.53648 * 11 10 9 13 13 O 1.42095 * 106.40457 * 311.45917 * 11 10 9 14 14 C 1.76209 * 107.21674 * 65.00043 * 11 10 9 15 15 C 1.33387 * 122.54040 * 90.02171 * 14 11 10 16 16 S 1.75877 * 109.59364 * 180.02562 * 15 14 11 17 17 C 1.75883 * 90.97069 * 359.97438 * 16 15 14 18 18 C 1.50697 * 125.20332 * 179.97438 * 17 16 15 19 19 O 1.42897 * 109.47622 * 245.02698 * 18 17 16 20 20 Si 1.86306 * 109.47290 * 5.02798 * 18 17 16 21 21 C 1.33385 * 109.59263 * 359.73167 * 17 16 15 22 22 C 1.53780 * 113.60975 * 209.99979 * 3 2 1 23 23 H 1.08994 * 109.47259 * 300.01125 * 1 2 3 24 24 H 1.09001 * 109.46422 * 60.00287 * 1 2 3 25 25 H 1.08995 * 109.47193 * 180.02562 * 1 2 3 26 26 H 1.09000 * 113.61139 * 25.42247 * 5 3 2 27 27 H 1.08995 * 113.66591 * 254.47317 * 5 3 2 28 28 H 1.09006 * 109.46703 * 34.14222 * 8 6 5 29 29 H 1.08996 * 109.46775 * 154.13574 * 8 6 5 30 30 H 1.08999 * 109.46661 * 299.99336 * 9 8 6 31 31 H 1.09002 * 109.47248 * 59.99810 * 9 8 6 32 32 H 0.97003 * 119.99586 * 344.99196 * 10 9 8 33 33 H 1.08008 * 125.20050 * 359.97438 * 15 14 11 34 34 H 1.09007 * 109.47082 * 125.02853 * 18 17 16 35 35 H 0.96705 * 114.00055 * 60.00106 * 19 18 17 36 36 H 1.48497 * 109.99574 * 58.67781 * 20 18 17 37 37 H 1.48502 * 110.00048 * 179.97438 * 20 18 17 38 38 H 1.08010 * 122.54123 * 180.23873 * 21 17 16 39 39 H 1.08994 * 113.61871 * 105.38796 * 22 3 2 40 40 H 1.08997 * 113.61428 * 334.47284 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3138 2.0789 -0.3240 5 6 2.7530 1.6534 1.3028 6 6 3.8221 2.3198 0.4209 7 1 3.6223 3.3707 0.2115 8 6 5.2538 2.0713 0.8999 9 6 5.6278 3.1161 1.9531 10 7 6.9990 2.8785 2.4113 11 16 7.8028 4.0506 3.2612 12 8 9.0761 3.5092 3.5852 13 8 7.6345 5.2599 2.5344 14 6 6.9501 4.2650 4.7883 15 6 7.2517 3.5650 5.8829 16 16 6.1944 4.0489 7.2024 17 6 5.3785 5.2095 6.1628 18 6 4.2445 6.1075 6.5854 19 8 3.0620 5.7523 5.8660 20 14 3.9427 5.9084 8.4130 21 6 5.9206 5.1770 4.9444 22 6 3.3756 1.3717 -0.7045 23 1 -0.3633 0.5140 0.8898 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 3.1163 0.7802 1.8448 27 1 2.2137 2.3542 1.9401 28 1 5.3231 1.0747 1.3361 29 1 5.9378 2.1462 0.0546 30 1 5.5585 4.1126 1.5169 31 1 4.9437 3.0411 2.7984 32 1 7.4358 2.0345 2.2169 33 1 8.0263 2.8151 5.9486 34 1 4.5028 7.1445 6.3706 35 1 2.7730 4.8407 6.0098 36 1 5.1749 6.2442 9.1707 37 1 2.8269 6.7893 8.8425 38 1 5.5792 5.8112 4.1395 39 1 3.3384 1.8455 -1.6854 40 1 3.9095 0.4215 -0.7123 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16488028_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:45:03 Heat of formation + Delta-G solvation = -94.052533 kcal Electronic energy + Delta-G solvation = -24543.446809 eV Core-core repulsion = 20772.578444 eV Total energy + Delta-G solvation = -3770.868365 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 334.079 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.49658 -39.48029 -38.43475 -37.68357 -37.51462 -37.04078 -36.16786 -31.81922 -31.09366 -27.62103 -27.20403 -26.63368 -25.14030 -24.90806 -22.55918 -21.42572 -20.64795 -20.03013 -19.19667 -18.55092 -17.88463 -17.68557 -17.51805 -17.08641 -16.54695 -16.33707 -16.17255 -15.93500 -15.69562 -15.38832 -15.09061 -14.85223 -14.29913 -14.15051 -13.97933 -13.94988 -13.57940 -13.35081 -13.31524 -13.27144 -13.11376 -12.95315 -12.82420 -12.54431 -12.45947 -12.21856 -12.18358 -11.68372 -11.64680 -11.36012 -11.14530 -10.65718 -10.49843 -10.34962 -10.18417 -9.82860 -5.20277 -0.78663 -0.46875 0.34144 0.58817 0.98465 1.16794 1.53853 1.84646 2.07273 2.67440 2.93795 3.20120 3.43004 3.56526 3.65290 3.69658 3.88091 3.91020 3.95401 4.05564 4.19298 4.24029 4.37417 4.38691 4.49213 4.56744 4.62047 4.63603 4.70143 4.79251 4.86900 4.90320 4.90551 4.94408 5.03819 5.04426 5.15611 5.24894 5.36622 5.53341 6.05000 6.35803 6.66610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.404 6.404 3 C 0.048 3.952 4 H 0.095 0.905 5 C -0.147 4.147 6 C -0.101 4.101 7 H 0.104 0.896 8 C -0.109 4.109 9 C 0.112 3.888 10 N -1.104 6.104 11 S 2.726 3.274 12 O -0.986 6.986 13 O -0.986 6.986 14 C -0.694 4.694 15 C -0.086 4.086 16 S 0.189 5.811 17 C -0.234 4.234 18 C -0.030 4.030 19 O -0.544 6.544 20 Si 0.733 3.267 21 C -0.057 4.057 22 C -0.135 4.135 23 H 0.049 0.951 24 H 0.047 0.953 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.429 0.571 33 H 0.203 0.797 34 H 0.120 0.880 35 H 0.397 0.603 36 H -0.267 1.267 37 H -0.269 1.269 38 H 0.153 0.847 39 H 0.075 0.925 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.110 -4.355 2.112 7.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.323 6.323 3 C -0.010 4.010 4 H 0.113 0.887 5 C -0.185 4.185 6 C -0.121 4.121 7 H 0.122 0.878 8 C -0.148 4.148 9 C -0.014 4.014 10 N -0.868 5.868 11 S 2.815 3.185 12 O -0.977 6.977 13 O -0.976 6.976 14 C -0.795 4.795 15 C -0.225 4.225 16 S 0.453 5.547 17 C -0.352 4.352 18 C -0.143 4.143 19 O -0.352 6.352 20 Si 0.635 3.365 21 C -0.086 4.086 22 C -0.172 4.172 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.108 0.892 26 H 0.105 0.895 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.266 0.734 33 H 0.220 0.780 34 H 0.138 0.862 35 H 0.248 0.752 36 H -0.193 1.193 37 H -0.194 1.194 38 H 0.170 0.830 39 H 0.094 0.906 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.505 -3.317 4.001 6.878 hybrid contribution -0.022 0.545 -1.537 1.631 sum -4.527 -2.772 2.464 5.852 Atomic orbital electron populations 1.22912 0.80177 1.03441 1.00632 1.87910 1.20921 1.28692 1.94791 1.23972 0.94278 0.84872 0.97875 0.88741 1.23597 0.97324 1.00860 0.96727 1.22249 0.93791 0.99751 0.96282 0.87767 1.21684 0.95907 0.99005 0.98249 1.21507 0.80629 1.00506 0.98754 1.55230 1.26716 1.33979 1.70874 1.00735 0.72134 0.72680 0.72969 1.93569 1.39279 1.79616 1.85198 1.93556 1.86526 1.46489 1.71047 1.29809 1.16757 1.11104 1.21817 1.26227 1.01115 1.00278 0.94872 1.84238 1.26448 1.31523 1.12463 1.25179 1.05905 1.06046 0.98072 1.24537 0.82864 0.98409 1.08499 1.86513 1.40619 1.36573 1.71536 0.94295 0.79913 0.90073 0.72203 1.19675 0.93344 0.97286 0.98307 1.23287 0.95182 1.00252 0.98525 0.93217 0.93417 0.89241 0.89548 0.90246 0.90133 0.90556 0.90529 0.90032 0.73388 0.78005 0.86247 0.75247 1.19307 1.19440 0.82970 0.90605 0.89727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.04 10.85 113.37 1.23 1.19 16 2 O -0.40 -1.24 10.72 -148.98 -1.60 -2.84 16 3 C 0.05 -0.07 4.31 31.18 0.13 0.06 16 4 H 0.09 -0.34 7.87 -2.38 -0.02 -0.36 16 5 C -0.15 0.64 7.48 31.18 0.23 0.88 16 6 C -0.10 0.56 3.64 -10.27 -0.04 0.53 16 7 H 0.10 -0.70 8.14 -2.39 -0.02 -0.72 16 8 C -0.11 0.69 5.18 30.60 0.16 0.85 16 9 C 0.11 -0.59 6.22 86.38 0.54 -0.05 16 10 N -1.10 4.22 6.00 -187.48 -1.12 3.10 16 11 S 2.73 7.72 5.80 -56.49 -0.33 7.39 16 12 O -0.99 -8.11 17.64 -128.00 -2.26 -10.37 16 13 O -0.99 -9.67 17.10 -128.00 -2.19 -11.86 16 14 C -0.69 -0.30 5.86 21.22 0.12 -0.18 16 15 C -0.09 0.20 10.70 66.72 0.71 0.92 16 16 S 0.19 -0.75 20.60 -56.49 -1.16 -1.91 16 17 C -0.23 0.34 5.70 24.59 0.14 0.48 16 18 C -0.03 0.07 2.96 71.23 0.21 0.28 16 19 O -0.54 1.55 12.88 -148.98 -1.92 -0.37 16 20 Si 0.73 -2.67 30.98 68.60 2.13 -0.54 16 21 C -0.06 -0.05 9.59 21.21 0.20 0.16 16 22 C -0.13 0.37 7.48 31.12 0.23 0.60 16 23 H 0.05 -0.18 8.14 -2.39 -0.02 -0.20 16 24 H 0.05 -0.15 8.14 -2.39 -0.02 -0.17 16 25 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 26 H 0.09 -0.27 7.92 -2.39 -0.02 -0.29 16 27 H 0.08 -0.47 8.14 -2.39 -0.02 -0.49 16 28 H 0.08 -0.58 7.88 -2.38 -0.02 -0.60 16 29 H 0.08 -0.45 8.14 -2.39 -0.02 -0.47 16 30 H 0.08 -0.29 7.75 -2.39 -0.02 -0.31 16 31 H 0.08 -0.64 8.14 -2.39 -0.02 -0.66 16 32 H 0.43 -3.15 8.65 -96.74 -0.84 -3.99 16 33 H 0.20 -1.30 8.00 -2.91 -0.02 -1.32 16 34 H 0.12 -0.15 7.96 -2.38 -0.02 -0.17 16 35 H 0.40 -4.46 8.70 -74.05 -0.64 -5.11 16 36 H -0.27 -0.30 7.11 99.48 0.71 0.41 16 37 H -0.27 -0.70 7.11 99.48 0.71 0.01 16 38 H 0.15 0.17 7.96 -2.91 -0.02 0.14 16 39 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 40 H 0.08 -0.10 8.10 -2.39 -0.02 -0.12 16 Total: 0.00 -21.72 361.81 -4.95 -26.68 By element: Atomic # 1 Polarization: -14.61 SS G_CDS: -0.38 Total: -14.99 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 3.88 Total: 5.71 kcal Atomic # 7 Polarization: 4.22 SS G_CDS: -1.12 Total: 3.10 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -7.96 Total: -25.44 kcal Atomic # 14 Polarization: -2.67 SS G_CDS: 2.13 Total: -0.54 kcal Atomic # 16 Polarization: 6.96 SS G_CDS: -1.49 Total: 5.47 kcal Total: -21.72 -4.95 -26.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16488028_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.374 kcal (2) G-P(sol) polarization free energy of solvation -21.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds