Wall clock time and date at job start Mon Mar 8 2021 09:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99494 * 2 1 4 4 H 1.09003 * 112.85321 * 341.19207 * 3 2 1 5 5 C 1.53779 * 113.61805 * 112.50417 * 3 2 1 6 6 C 1.53778 * 87.08599 * 139.97994 * 5 3 2 7 7 H 1.08996 * 113.61718 * 89.11667 * 6 5 3 8 8 C 1.53006 * 113.69077 * 220.01161 * 6 5 3 9 9 C 1.52999 * 109.46867 * 272.53394 * 8 6 5 10 10 N 1.46499 * 109.47084 * 180.02562 * 9 8 6 11 11 S 1.65591 * 120.00084 * 164.99935 * 10 9 8 12 12 O 1.42101 * 106.40174 * 178.53928 * 11 10 9 13 13 O 1.42100 * 106.40142 * 311.45715 * 11 10 9 14 14 C 1.76197 * 107.21917 * 64.99828 * 11 10 9 15 15 C 1.33398 * 122.53649 * 95.25133 * 14 11 10 16 16 C 1.50695 * 125.20347 * 359.97438 * 15 14 11 17 17 S 1.75883 * 109.58970 * 180.02562 * 15 14 11 18 18 C 1.75881 * 90.97391 * 359.97438 * 17 15 14 19 19 C 1.50702 * 125.20829 * 180.02562 * 18 17 15 20 20 C 1.33392 * 109.59041 * 359.72826 * 18 17 15 21 21 C 1.50699 * 122.53855 * 180.23979 * 20 18 17 22 22 O 1.42902 * 109.47239 * 74.20602 * 21 20 18 23 23 Si 1.86300 * 109.47540 * 314.20275 * 21 20 18 24 24 C 1.53780 * 113.61345 * 210.00082 * 3 2 1 25 25 H 1.09002 * 109.47000 * 60.00222 * 1 2 3 26 26 H 1.08998 * 109.47475 * 299.99700 * 1 2 3 27 27 H 1.09005 * 109.46615 * 179.97438 * 1 2 3 28 28 H 1.09000 * 113.61480 * 254.52972 * 5 3 2 29 29 H 1.09005 * 113.60828 * 25.42735 * 5 3 2 30 30 H 1.09003 * 109.46933 * 32.53428 * 8 6 5 31 31 H 1.08997 * 109.46914 * 152.53166 * 8 6 5 32 32 H 1.09002 * 109.46643 * 299.99888 * 9 8 6 33 33 H 1.08993 * 109.46857 * 59.99946 * 9 8 6 34 34 H 0.97006 * 119.99745 * 345.00004 * 10 9 8 35 35 H 1.08999 * 109.46882 * 90.00397 * 16 15 14 36 36 H 1.09004 * 109.47075 * 209.99746 * 16 15 14 37 37 H 1.09000 * 109.47288 * 329.99986 * 16 15 14 38 38 H 1.09000 * 109.46649 * 4.82773 * 19 18 17 39 39 H 1.08998 * 109.47572 * 124.82665 * 19 18 17 40 40 H 1.08999 * 109.47253 * 244.83282 * 19 18 17 41 41 H 1.09004 * 109.46973 * 194.20324 * 21 20 18 42 42 H 0.96702 * 113.99314 * 294.25867 * 22 21 20 43 43 H 1.48499 * 110.00373 * 185.06619 * 23 21 20 44 44 H 1.48501 * 109.99728 * 306.38717 * 23 21 20 45 45 H 1.09001 * 113.61841 * 334.56886 * 24 3 2 46 46 H 1.09000 * 113.61889 * 105.38733 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 -0.3238 5 6 2.7534 1.6491 1.3017 6 6 3.8226 2.3184 0.4222 7 1 3.6221 3.3695 0.2149 8 6 5.2549 2.0696 0.8992 9 6 5.6429 3.1356 1.9259 10 7 7.0145 2.8978 2.3823 11 16 7.8320 4.0828 3.2006 12 8 9.1028 3.5390 3.5303 13 8 7.6692 5.2763 2.4468 14 6 6.9894 4.3392 4.7266 15 6 7.3570 3.7377 5.8591 16 6 8.5111 2.7788 5.9984 17 16 6.2878 4.2340 7.1644 18 6 5.3752 5.2613 6.0666 19 6 4.1869 6.1044 6.4514 20 6 5.8997 5.1849 4.8425 21 6 5.3442 5.9561 3.6730 22 8 5.7018 7.3340 3.7979 23 14 3.4883 5.7958 3.6486 24 6 3.3755 1.3720 -0.7045 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 2.2140 2.3478 1.9411 29 1 3.1166 0.7741 1.8409 30 1 5.3189 1.0829 1.3580 31 1 5.9349 2.1196 0.0489 32 1 5.5789 4.1222 1.4671 33 1 4.9628 3.0855 2.7762 34 1 7.4438 2.0461 2.2051 35 1 9.4164 3.3333 6.2458 36 1 8.2952 2.0632 6.7918 37 1 8.6566 2.2463 5.0585 38 1 4.0337 6.0461 7.5290 39 1 4.3687 7.1405 6.1658 40 1 3.2986 5.7365 5.9377 41 1 5.7556 5.5566 2.7460 42 1 5.2967 7.7782 4.5553 43 1 2.9380 6.4484 2.4334 44 1 3.1019 4.3622 3.6743 45 1 3.9089 0.4215 -0.7138 46 1 3.3381 1.8459 -1.6854 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16488028_15065288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:45:09 Heat of formation + Delta-G solvation = -87.521894 kcal Electronic energy + Delta-G solvation = -29956.023850 eV Core-core repulsion = 25874.363437 eV Total energy + Delta-G solvation = -4081.660413 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.110 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -40.70250 -40.33833 -38.49106 -37.81501 -37.09009 -36.85276 -36.34280 -34.33665 -31.30749 -31.04345 -28.09994 -27.74674 -26.83354 -26.02460 -25.30030 -23.20989 -22.81788 -20.98601 -20.61252 -20.01357 -19.02274 -18.51623 -17.90084 -17.65424 -17.46119 -16.90758 -16.72829 -16.35084 -16.07502 -16.01459 -15.83324 -15.57656 -15.39434 -15.11642 -14.74147 -14.51159 -14.26291 -14.12866 -14.08863 -13.79731 -13.66151 -13.49097 -13.48265 -13.26294 -13.23575 -13.02974 -12.88213 -12.76078 -12.64917 -12.55621 -12.40168 -12.13754 -11.86626 -11.65388 -11.59861 -11.52373 -11.35977 -10.69343 -10.52730 -10.46959 -10.03021 -9.52431 -5.05739 -0.73732 -0.44697 0.35516 0.65749 0.81581 1.22786 1.53961 1.87735 2.02614 2.69804 2.78747 3.21149 3.34670 3.44436 3.47117 3.52456 3.64269 3.69387 3.72679 3.81204 3.92859 3.96360 4.00922 4.07774 4.19989 4.21272 4.25556 4.32503 4.40857 4.41589 4.44169 4.47603 4.52930 4.59237 4.68922 4.70541 4.71997 4.74082 4.80622 4.90851 4.92375 4.98707 5.02890 5.13155 5.15490 5.28295 5.80109 6.22358 6.60350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.377 6.377 3 C 0.059 3.941 4 H 0.087 0.913 5 C -0.154 4.154 6 C -0.113 4.113 7 H 0.095 0.905 8 C -0.113 4.113 9 C 0.109 3.891 10 N -1.116 6.116 11 S 2.700 3.300 12 O -0.952 6.952 13 O -0.937 6.937 14 C -0.682 4.682 15 C -0.048 4.048 16 C -0.115 4.115 17 S 0.164 5.836 18 C -0.193 4.193 19 C -0.088 4.088 20 C -0.066 4.066 21 C -0.070 4.070 22 O -0.516 6.516 23 Si 0.639 3.361 24 C -0.130 4.130 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.421 0.579 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.130 0.870 42 H 0.367 0.633 43 H -0.239 1.239 44 H -0.243 1.243 45 H 0.094 0.906 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.570 -1.384 3.583 6.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.296 6.296 3 C 0.001 3.999 4 H 0.105 0.895 5 C -0.192 4.192 6 C -0.133 4.133 7 H 0.113 0.887 8 C -0.151 4.151 9 C -0.017 4.017 10 N -0.877 5.877 11 S 2.788 3.212 12 O -0.942 6.942 13 O -0.927 6.927 14 C -0.781 4.781 15 C -0.169 4.169 16 C -0.174 4.174 17 S 0.430 5.570 18 C -0.311 4.311 19 C -0.145 4.145 20 C -0.077 4.077 21 C -0.183 4.183 22 O -0.320 6.320 23 Si 0.538 3.462 24 C -0.167 4.167 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.105 0.895 28 H 0.086 0.914 29 H 0.112 0.888 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.256 0.744 35 H 0.118 0.882 36 H 0.100 0.900 37 H 0.120 0.880 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.147 0.853 42 H 0.214 0.786 43 H -0.163 1.163 44 H -0.167 1.167 45 H 0.112 0.888 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.300 -1.711 3.960 6.834 hybrid contribution 0.072 -0.173 -0.961 0.979 sum -5.228 -1.884 2.999 6.315 Atomic orbital electron populations 1.22814 0.80998 1.02979 0.99990 1.87954 1.19807 1.27245 1.94572 1.23714 0.94004 0.85437 0.96731 0.89462 1.23646 0.97414 1.00951 0.97170 1.22315 0.93892 0.99679 0.97385 0.88659 1.21720 0.96159 0.98675 0.98588 1.21518 0.81425 1.00494 0.98293 1.55570 1.26169 1.33210 1.72771 1.01807 0.72831 0.73330 0.73239 1.93597 1.37392 1.78785 1.84392 1.93617 1.85356 1.44973 1.68764 1.29493 1.14665 1.12969 1.20973 1.24616 0.99083 0.97966 0.95208 1.20985 0.93858 0.97125 1.05383 1.84358 1.22238 1.39376 1.10998 1.24328 1.04331 1.06231 0.96220 1.20392 0.92629 0.98759 1.02762 1.18611 0.94690 0.98145 0.96221 1.25333 1.10964 0.84333 0.97690 1.86694 1.73994 1.19630 1.51659 0.95081 0.76971 0.85183 0.88944 1.23266 0.95263 1.00271 0.97910 0.93913 0.94010 0.89527 0.91399 0.88836 0.90386 0.90113 0.90318 0.91597 0.74402 0.88189 0.90015 0.87987 0.89275 0.89280 0.89226 0.85317 0.78606 1.16271 1.16667 0.88756 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.01 10.85 101.05 1.10 1.08 16 2 O -0.38 -0.73 10.71 -35.23 -0.38 -1.11 16 3 C 0.06 0.00 4.31 -25.92 -0.11 -0.11 16 4 H 0.09 -0.09 7.87 -51.93 -0.41 -0.49 16 5 C -0.15 0.07 7.46 -25.92 -0.19 -0.12 16 6 C -0.11 0.14 3.65 -89.80 -0.33 -0.19 16 7 H 0.10 -0.15 8.13 -51.93 -0.42 -0.57 16 8 C -0.11 0.19 5.20 -26.73 -0.14 0.05 16 9 C 0.11 -0.05 5.48 -4.04 -0.02 -0.07 16 10 N -1.12 0.32 6.00 -10.62 -0.06 0.26 16 11 S 2.70 7.86 5.33 -107.50 -0.57 7.29 16 12 O -0.95 -4.15 14.75 -57.17 -0.84 -4.99 16 13 O -0.94 -5.65 14.51 -57.17 -0.83 -6.48 16 14 C -0.68 -1.52 5.86 -41.21 -0.24 -1.76 16 15 C -0.05 -0.05 6.50 -36.00 -0.23 -0.29 16 16 C -0.12 0.02 9.13 36.00 0.33 0.35 16 17 S 0.16 -0.07 23.31 -107.50 -2.51 -2.57 16 18 C -0.19 0.08 6.11 -36.00 -0.22 -0.14 16 19 C -0.09 0.35 8.34 36.01 0.30 0.65 16 20 C -0.07 -0.11 4.68 -106.25 -0.50 -0.60 16 21 C -0.07 -0.14 2.11 36.01 0.08 -0.06 16 22 O -0.52 -1.31 12.94 -35.23 -0.46 -1.76 16 23 Si 0.64 -0.36 27.17 -169.99 -4.62 -4.98 16 24 C -0.13 0.09 7.47 -25.92 -0.19 -0.10 16 25 H 0.04 -0.05 8.14 -51.93 -0.42 -0.48 16 26 H 0.04 -0.05 8.14 -51.93 -0.42 -0.47 16 27 H 0.09 -0.11 8.14 -51.93 -0.42 -0.53 16 28 H 0.07 -0.04 8.14 -51.93 -0.42 -0.46 16 29 H 0.09 -0.01 7.90 -51.93 -0.41 -0.42 16 30 H 0.08 -0.18 7.85 -51.93 -0.41 -0.59 16 31 H 0.08 -0.16 8.14 -51.93 -0.42 -0.59 16 32 H 0.08 0.00 6.45 -51.93 -0.33 -0.34 16 33 H 0.07 -0.06 7.69 -51.93 -0.40 -0.45 16 34 H 0.42 -1.06 8.65 -34.47 -0.30 -1.36 16 35 H 0.10 -0.02 8.14 -51.93 -0.42 -0.45 16 36 H 0.08 -0.18 8.14 -51.93 -0.42 -0.61 16 37 H 0.10 -0.01 6.03 -51.93 -0.31 -0.32 16 38 H 0.09 -0.45 8.14 -51.93 -0.42 -0.88 16 39 H 0.09 -0.52 6.34 -51.93 -0.33 -0.85 16 40 H 0.09 -0.45 4.79 -51.93 -0.25 -0.70 16 41 H 0.13 0.41 2.83 -51.93 -0.15 0.27 16 42 H 0.37 -0.84 6.93 45.56 0.32 -0.52 16 43 H -0.24 -0.44 7.11 56.52 0.40 -0.04 16 44 H -0.24 -0.09 7.11 56.52 0.40 0.31 16 45 H 0.09 -0.03 8.10 -51.93 -0.42 -0.45 16 46 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 LS Contribution 378.93 15.07 5.71 5.71 Total: 0.00 -9.70 378.93 -11.76 -21.46 By element: Atomic # 1 Polarization: -4.69 SS G_CDS: -6.83 Total: -11.51 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -0.38 Total: -1.31 kcal Atomic # 7 Polarization: 0.32 SS G_CDS: -0.06 Total: 0.26 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: -2.51 Total: -14.35 kcal Atomic # 14 Polarization: -0.36 SS G_CDS: -4.62 Total: -4.98 kcal Atomic # 16 Polarization: 7.79 SS G_CDS: -3.08 Total: 4.71 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -9.70 -11.76 -21.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16488028_15065288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.058 kcal (2) G-P(sol) polarization free energy of solvation -9.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds