Wall clock time and date at job start Mon Mar 8 2021 09:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99494 * 2 1 4 4 H 1.09003 * 112.85321 * 341.19207 * 3 2 1 5 5 C 1.53779 * 113.61805 * 112.50417 * 3 2 1 6 6 C 1.53778 * 87.08599 * 139.97994 * 5 3 2 7 7 H 1.08996 * 113.61718 * 89.11667 * 6 5 3 8 8 C 1.53006 * 113.69077 * 220.01161 * 6 5 3 9 9 C 1.52999 * 109.46867 * 272.53394 * 8 6 5 10 10 N 1.46499 * 109.47084 * 180.02562 * 9 8 6 11 11 S 1.65591 * 120.00084 * 164.99935 * 10 9 8 12 12 O 1.42101 * 106.40174 * 178.53928 * 11 10 9 13 13 O 1.42100 * 106.40142 * 311.45715 * 11 10 9 14 14 C 1.76197 * 107.21917 * 64.99828 * 11 10 9 15 15 C 1.33398 * 122.53649 * 95.25133 * 14 11 10 16 16 C 1.50695 * 125.20347 * 359.97438 * 15 14 11 17 17 S 1.75883 * 109.58970 * 180.02562 * 15 14 11 18 18 C 1.75881 * 90.97391 * 359.97438 * 17 15 14 19 19 C 1.50702 * 125.20829 * 180.02562 * 18 17 15 20 20 C 1.33392 * 109.59041 * 359.72826 * 18 17 15 21 21 C 1.50699 * 122.53855 * 180.23979 * 20 18 17 22 22 O 1.42902 * 109.47239 * 74.20602 * 21 20 18 23 23 Si 1.86300 * 109.47540 * 314.20275 * 21 20 18 24 24 C 1.53780 * 113.61345 * 210.00082 * 3 2 1 25 25 H 1.09002 * 109.47000 * 60.00222 * 1 2 3 26 26 H 1.08998 * 109.47475 * 299.99700 * 1 2 3 27 27 H 1.09005 * 109.46615 * 179.97438 * 1 2 3 28 28 H 1.09000 * 113.61480 * 254.52972 * 5 3 2 29 29 H 1.09005 * 113.60828 * 25.42735 * 5 3 2 30 30 H 1.09003 * 109.46933 * 32.53428 * 8 6 5 31 31 H 1.08997 * 109.46914 * 152.53166 * 8 6 5 32 32 H 1.09002 * 109.46643 * 299.99888 * 9 8 6 33 33 H 1.08993 * 109.46857 * 59.99946 * 9 8 6 34 34 H 0.97006 * 119.99745 * 345.00004 * 10 9 8 35 35 H 1.08999 * 109.46882 * 90.00397 * 16 15 14 36 36 H 1.09004 * 109.47075 * 209.99746 * 16 15 14 37 37 H 1.09000 * 109.47288 * 329.99986 * 16 15 14 38 38 H 1.09000 * 109.46649 * 4.82773 * 19 18 17 39 39 H 1.08998 * 109.47572 * 124.82665 * 19 18 17 40 40 H 1.08999 * 109.47253 * 244.83282 * 19 18 17 41 41 H 1.09004 * 109.46973 * 194.20324 * 21 20 18 42 42 H 0.96702 * 113.99314 * 294.25867 * 22 21 20 43 43 H 1.48499 * 110.00373 * 185.06619 * 23 21 20 44 44 H 1.48501 * 109.99728 * 306.38717 * 23 21 20 45 45 H 1.09001 * 113.61841 * 334.56886 * 24 3 2 46 46 H 1.09000 * 113.61889 * 105.38733 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3137 2.0789 -0.3238 5 6 2.7534 1.6491 1.3017 6 6 3.8226 2.3184 0.4222 7 1 3.6221 3.3695 0.2149 8 6 5.2549 2.0696 0.8992 9 6 5.6429 3.1356 1.9259 10 7 7.0145 2.8978 2.3823 11 16 7.8320 4.0828 3.2006 12 8 9.1028 3.5390 3.5303 13 8 7.6692 5.2763 2.4468 14 6 6.9894 4.3392 4.7266 15 6 7.3570 3.7377 5.8591 16 6 8.5111 2.7788 5.9984 17 16 6.2878 4.2340 7.1644 18 6 5.3752 5.2613 6.0666 19 6 4.1869 6.1044 6.4514 20 6 5.8997 5.1849 4.8425 21 6 5.3442 5.9561 3.6730 22 8 5.7018 7.3340 3.7979 23 14 3.4883 5.7958 3.6486 24 6 3.3755 1.3720 -0.7045 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 2.2140 2.3478 1.9411 29 1 3.1166 0.7741 1.8409 30 1 5.3189 1.0829 1.3580 31 1 5.9349 2.1196 0.0489 32 1 5.5789 4.1222 1.4671 33 1 4.9628 3.0855 2.7762 34 1 7.4438 2.0461 2.2051 35 1 9.4164 3.3333 6.2458 36 1 8.2952 2.0632 6.7918 37 1 8.6566 2.2463 5.0585 38 1 4.0337 6.0461 7.5290 39 1 4.3687 7.1405 6.1658 40 1 3.2986 5.7365 5.9377 41 1 5.7556 5.5566 2.7460 42 1 5.2967 7.7782 4.5553 43 1 2.9380 6.4484 2.4334 44 1 3.1019 4.3622 3.6743 45 1 3.9089 0.4215 -0.7138 46 1 3.3381 1.8459 -1.6854 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16488028_15065288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:45:07 Heat of formation + Delta-G solvation = -90.190253 kcal Electronic energy + Delta-G solvation = -29956.139559 eV Core-core repulsion = 25874.363437 eV Total energy + Delta-G solvation = -4081.776122 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.110 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.66087 -40.34553 -38.73457 -37.82450 -37.18845 -37.14725 -36.36113 -34.26413 -31.27879 -30.91044 -28.13215 -27.69906 -26.77964 -25.94791 -25.28203 -23.25066 -22.76741 -21.02373 -20.58875 -20.09811 -19.09237 -18.61417 -17.97346 -17.64249 -17.51384 -16.97913 -16.69416 -16.34635 -16.09732 -16.02504 -15.82121 -15.66909 -15.40935 -15.09352 -14.65032 -14.49621 -14.22531 -14.11441 -14.06018 -13.74655 -13.66085 -13.46294 -13.44571 -13.39820 -13.24004 -13.17437 -12.87221 -12.74371 -12.62194 -12.56551 -12.33603 -12.19787 -11.81023 -11.73593 -11.60897 -11.49392 -11.29857 -10.70456 -10.57135 -10.45782 -10.00217 -9.49793 -5.02312 -0.88327 -0.47186 0.38570 0.66035 0.79387 1.21404 1.56946 1.88157 1.92900 2.52551 2.83517 3.10045 3.39928 3.45851 3.53387 3.56002 3.71132 3.75037 3.79214 3.85272 3.99277 4.02000 4.09883 4.14632 4.22825 4.34808 4.39365 4.49838 4.50659 4.52417 4.54056 4.59027 4.61183 4.69439 4.75674 4.78344 4.81293 4.88121 4.88753 4.97653 4.98662 5.06217 5.06498 5.19992 5.25160 5.36209 5.89087 6.25892 6.75445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.401 6.401 3 C 0.051 3.949 4 H 0.096 0.904 5 C -0.153 4.153 6 C -0.110 4.110 7 H 0.099 0.901 8 C -0.109 4.109 9 C 0.104 3.896 10 N -1.105 6.105 11 S 2.707 3.293 12 O -0.974 6.974 13 O -0.976 6.976 14 C -0.695 4.695 15 C -0.063 4.063 16 C -0.121 4.121 17 S 0.194 5.806 18 C -0.185 4.185 19 C -0.100 4.100 20 C -0.091 4.091 21 C -0.092 4.092 22 O -0.541 6.541 23 Si 0.726 3.274 24 C -0.129 4.129 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.092 0.908 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.431 0.569 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.110 0.890 42 H 0.385 0.615 43 H -0.277 1.277 44 H -0.253 1.253 45 H 0.089 0.911 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.930 -1.489 4.936 8.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.320 6.320 3 C -0.006 4.006 4 H 0.114 0.886 5 C -0.191 4.191 6 C -0.129 4.129 7 H 0.117 0.883 8 C -0.148 4.148 9 C -0.022 4.022 10 N -0.869 5.869 11 S 2.797 3.203 12 O -0.964 6.964 13 O -0.966 6.966 14 C -0.796 4.796 15 C -0.184 4.184 16 C -0.179 4.179 17 S 0.460 5.540 18 C -0.303 4.303 19 C -0.156 4.156 20 C -0.101 4.101 21 C -0.203 4.203 22 O -0.348 6.348 23 Si 0.626 3.374 24 C -0.166 4.166 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.110 0.890 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.268 0.732 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.123 0.877 41 H 0.127 0.873 42 H 0.235 0.765 43 H -0.203 1.203 44 H -0.178 1.178 45 H 0.108 0.892 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.619 -1.823 5.314 8.681 hybrid contribution 0.488 -0.137 -1.350 1.442 sum -6.131 -1.960 3.964 7.559 Atomic orbital electron populations 1.22939 0.80046 1.03611 1.00659 1.87915 1.21048 1.28337 1.94740 1.23882 0.94411 0.85122 0.97200 0.88575 1.23626 0.97572 1.00839 0.97064 1.22302 0.93855 0.99759 0.96993 0.88321 1.21710 0.96009 0.98610 0.98425 1.21619 0.81113 1.00622 0.98797 1.55279 1.26220 1.33022 1.72367 1.01241 0.72684 0.72951 0.73446 1.93559 1.39069 1.79005 1.84800 1.93574 1.85976 1.46925 1.70076 1.29345 1.15438 1.14209 1.20604 1.24824 0.99742 0.98198 0.95654 1.21066 0.93487 0.97377 1.05958 1.84224 1.21199 1.38661 1.09875 1.24804 1.04622 1.05465 0.95415 1.20705 0.91440 0.99384 1.04099 1.18642 0.95392 0.99095 0.97021 1.25646 1.13396 0.83987 0.97224 1.86636 1.74913 1.20284 1.52998 0.94164 0.73271 0.83037 0.86919 1.23254 0.94905 1.00176 0.98279 0.93198 0.93374 0.89000 0.91272 0.89251 0.89515 0.89649 0.91095 0.91137 0.73155 0.88523 0.87854 0.88515 0.87440 0.87122 0.87687 0.87326 0.76506 1.20321 1.17821 0.89200 0.90092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.02 10.85 113.37 1.23 1.21 16 2 O -0.40 -1.65 10.71 -148.98 -1.60 -3.25 16 3 C 0.05 0.01 4.31 31.12 0.13 0.15 16 4 H 0.10 -0.20 7.87 -2.39 -0.02 -0.22 16 5 C -0.15 0.14 7.46 31.12 0.23 0.37 16 6 C -0.11 0.25 3.65 -10.26 -0.04 0.21 16 7 H 0.10 -0.28 8.13 -2.39 -0.02 -0.30 16 8 C -0.11 0.33 5.20 30.60 0.16 0.49 16 9 C 0.10 0.00 5.48 86.38 0.47 0.47 16 10 N -1.11 -0.80 6.00 -187.50 -1.12 -1.93 16 11 S 2.71 20.99 5.33 -56.49 -0.30 20.69 16 12 O -0.97 -10.47 14.75 -128.00 -1.89 -12.36 16 13 O -0.98 -14.33 14.51 -128.00 -1.86 -16.19 16 14 C -0.69 -3.77 5.86 21.22 0.12 -3.65 16 15 C -0.06 -0.16 6.50 24.59 0.16 0.00 16 16 C -0.12 -0.02 9.13 71.23 0.65 0.63 16 17 S 0.19 -0.36 23.31 -56.49 -1.32 -1.68 16 18 C -0.18 0.34 6.11 24.59 0.15 0.49 16 19 C -0.10 1.02 8.34 71.24 0.59 1.61 16 20 C -0.09 -0.31 4.68 -20.92 -0.10 -0.41 16 21 C -0.09 -0.43 2.11 71.24 0.15 -0.28 16 22 O -0.54 -3.19 12.94 -148.98 -1.93 -5.12 16 23 Si 0.73 -1.06 27.17 68.60 1.86 0.80 16 24 C -0.13 0.17 7.47 31.12 0.23 0.40 16 25 H 0.05 -0.14 8.14 -2.39 -0.02 -0.15 16 26 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 27 H 0.09 -0.24 8.14 -2.38 -0.02 -0.26 16 28 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 29 H 0.09 0.00 7.90 -2.38 -0.02 -0.02 16 30 H 0.09 -0.40 7.85 -2.39 -0.02 -0.42 16 31 H 0.08 -0.32 8.14 -2.39 -0.02 -0.34 16 32 H 0.07 0.12 6.45 -2.39 -0.02 0.11 16 33 H 0.07 -0.07 7.69 -2.39 -0.02 -0.09 16 34 H 0.43 -1.72 8.65 -96.74 -0.84 -2.55 16 35 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 36 H 0.10 -0.51 8.14 -2.38 -0.02 -0.53 16 37 H 0.10 0.10 6.03 -2.39 -0.01 0.08 16 38 H 0.11 -1.42 8.14 -2.39 -0.02 -1.44 16 39 H 0.11 -1.57 6.34 -2.39 -0.02 -1.58 16 40 H 0.11 -1.33 4.79 -2.39 -0.01 -1.35 16 41 H 0.11 0.91 2.83 -2.38 -0.01 0.91 16 42 H 0.39 -1.82 6.93 -74.06 -0.51 -2.34 16 43 H -0.28 -1.23 7.11 99.48 0.71 -0.53 16 44 H -0.25 0.02 7.11 99.48 0.71 0.73 16 45 H 0.09 -0.03 8.10 -2.39 -0.02 -0.05 16 46 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 Total: 0.00 -23.84 378.93 -4.28 -28.12 By element: Atomic # 1 Polarization: -10.50 SS G_CDS: -0.29 Total: -10.78 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 4.16 Total: 1.69 kcal Atomic # 7 Polarization: -0.80 SS G_CDS: -1.12 Total: -1.93 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -7.27 Total: -36.91 kcal Atomic # 14 Polarization: -1.06 SS G_CDS: 1.86 Total: 0.80 kcal Atomic # 16 Polarization: 20.63 SS G_CDS: -1.62 Total: 19.01 kcal Total: -23.84 -4.28 -28.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16488028_15065288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.074 kcal (2) G-P(sol) polarization free energy of solvation -23.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds