Wall clock time and date at job start Mon Mar 8 2021 09:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 114.00221 * 2 1 4 4 H 1.09002 * 112.85062 * 18.80700 * 3 2 1 5 5 C 1.53779 * 113.61511 * 149.99609 * 3 2 1 6 6 C 1.53785 * 87.08136 * 139.98142 * 5 3 2 7 7 H 1.09003 * 113.61205 * 89.19751 * 6 5 3 8 8 C 1.52998 * 113.61879 * 220.02021 * 6 5 3 9 9 C 1.52995 * 109.47275 * 183.47081 * 8 6 5 10 10 N 1.46499 * 109.47224 * 179.97438 * 9 8 6 11 11 S 1.65603 * 120.00298 * 164.09619 * 10 9 8 12 12 O 1.42100 * 106.39753 * 310.75768 * 11 10 9 13 13 O 1.42097 * 106.40201 * 177.83886 * 11 10 9 14 14 C 1.76199 * 107.21577 * 64.29780 * 11 10 9 15 15 C 1.38207 * 120.00126 * 64.64279 * 14 11 10 16 16 C 1.50699 * 119.99944 * 0.04089 * 15 14 11 17 17 O 1.42898 * 109.47438 * 284.54558 * 16 15 14 18 18 Si 1.86301 * 109.47273 * 164.54699 * 16 15 14 19 19 C 1.38257 * 120.00390 * 180.20919 * 15 14 11 20 20 C 1.38218 * 119.99539 * 359.85700 * 19 15 14 21 21 C 1.38262 * 120.00122 * 359.95159 * 20 19 15 22 22 C 1.38211 * 119.99943 * 359.97438 * 21 20 19 23 23 C 1.53786 * 87.17089 * 334.61377 * 6 5 3 24 24 H 1.09009 * 109.47384 * 300.00158 * 1 2 3 25 25 H 1.09001 * 109.47121 * 59.99805 * 1 2 3 26 26 H 1.09003 * 109.47321 * 180.02562 * 1 2 3 27 27 H 1.09006 * 113.61480 * 25.43735 * 5 3 2 28 28 H 1.09000 * 113.61810 * 254.52956 * 5 3 2 29 29 H 1.09001 * 109.46782 * 63.46568 * 8 6 5 30 30 H 1.09004 * 109.47013 * 303.47153 * 8 6 5 31 31 H 1.09003 * 109.47183 * 60.00269 * 9 8 6 32 32 H 1.09004 * 109.47159 * 299.99983 * 9 8 6 33 33 H 0.97008 * 119.99807 * 344.09638 * 10 9 8 34 34 H 1.09001 * 109.47591 * 44.54914 * 16 15 14 35 35 H 0.96701 * 114.00307 * 179.97438 * 17 16 15 36 36 H 1.48508 * 109.99944 * 60.00232 * 18 16 15 37 37 H 1.48494 * 110.00404 * 181.31759 * 18 16 15 38 38 H 1.07996 * 120.00637 * 179.83385 * 19 15 14 39 39 H 1.07997 * 119.99737 * 179.97438 * 20 19 15 40 40 H 1.07997 * 119.99463 * 180.02562 * 21 20 19 41 41 H 1.07992 * 120.00234 * 179.97438 * 22 21 20 42 42 H 1.08999 * 113.61112 * 139.93721 * 23 6 5 43 43 H 1.09003 * 113.60785 * 270.84043 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3138 2.0789 0.3238 5 6 3.3755 1.3718 0.7046 6 6 3.8227 2.3181 -0.4222 7 1 3.6235 3.3694 -0.2143 8 6 5.2543 2.0679 -0.9006 9 6 5.6292 3.1110 -1.9552 10 7 7.0002 2.8719 -2.4128 11 16 7.5416 3.5767 -3.8102 12 8 6.5562 3.3142 -4.7998 13 8 8.9037 3.1967 -3.9496 14 6 7.5351 5.3196 -3.5515 15 6 8.3724 5.8810 -2.6061 16 6 9.2915 5.0026 -1.7970 17 8 8.5357 4.3139 -0.7988 18 14 10.5918 6.0541 -0.9757 19 6 8.3643 7.2481 -2.4000 20 6 7.5209 8.0537 -3.1418 21 6 6.6861 7.4925 -4.0904 22 6 6.6954 6.1260 -4.2973 23 6 2.7533 1.6510 -1.3033 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 3.9088 0.4212 0.7138 28 1 3.3383 1.8470 1.6848 29 1 5.3230 1.0707 -1.3353 30 1 5.9384 2.1437 -0.0553 31 1 5.5605 4.1082 -1.5204 32 1 4.9452 3.0352 -2.8005 33 1 7.5909 2.3006 -1.8973 34 1 9.7723 4.2774 -2.4536 35 1 9.0643 3.7284 -0.2395 36 1 9.9493 7.0471 -0.0776 37 1 11.5236 5.1964 -0.2004 38 1 9.0166 7.6866 -1.6594 39 1 7.5142 9.1216 -2.9806 40 1 6.0275 8.1221 -4.6701 41 1 6.0431 5.6876 -5.0380 42 1 2.2146 2.3514 -1.9415 43 1 3.1162 0.7769 -1.8439 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16488028_2726874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:45:12 Heat of formation + Delta-G solvation = -90.765372 kcal Electronic energy + Delta-G solvation = -26779.762006 eV Core-core repulsion = 22919.883937 eV Total energy + Delta-G solvation = -3859.878069 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 328.122 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.62674 -40.53837 -38.60472 -37.83935 -37.51179 -37.06234 -36.11506 -32.96667 -32.38869 -31.08713 -27.66156 -26.92890 -26.69183 -25.13245 -24.40791 -22.74801 -22.52305 -20.79355 -20.37679 -19.12348 -18.57581 -18.45029 -17.58292 -17.55643 -17.05192 -16.71374 -16.40482 -16.22339 -15.93989 -15.80123 -15.68730 -15.18787 -15.13272 -15.04381 -14.12784 -14.01495 -13.88173 -13.53620 -13.48754 -13.38880 -13.37523 -13.27037 -13.18793 -13.09221 -12.95549 -12.43532 -12.26881 -12.22356 -11.98481 -11.73044 -11.64983 -11.34028 -11.21131 -10.54986 -10.41162 -10.40417 -10.38026 -10.04804 -4.94128 -0.68036 -0.28228 0.13647 1.21282 1.56905 1.85576 1.92727 2.35266 2.63551 2.89323 3.17273 3.31931 3.51881 3.65514 3.70931 3.78025 3.83425 3.90364 3.99254 4.08660 4.15584 4.19546 4.30566 4.30925 4.44703 4.46592 4.52429 4.60195 4.62143 4.66002 4.76151 4.82336 4.83008 4.85064 4.89527 4.99817 5.01290 5.11284 5.18659 5.21482 5.29595 5.32687 5.49202 5.75924 6.12945 6.31236 6.51592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.405 6.405 3 C 0.050 3.950 4 H 0.098 0.902 5 C -0.130 4.130 6 C -0.099 4.099 7 H 0.106 0.894 8 C -0.105 4.105 9 C 0.123 3.877 10 N -1.090 6.090 11 S 2.706 3.294 12 O -0.992 6.992 13 O -0.985 6.985 14 C -0.670 4.670 15 C 0.022 3.978 16 C -0.146 4.146 17 O -0.533 6.533 18 Si 0.770 3.230 19 C -0.149 4.149 20 C -0.055 4.055 21 C -0.137 4.137 22 C -0.038 4.038 23 C -0.157 4.157 24 H 0.050 0.950 25 H 0.047 0.953 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.426 0.574 34 H 0.106 0.894 35 H 0.398 0.602 36 H -0.276 1.276 37 H -0.281 1.281 38 H 0.150 0.850 39 H 0.165 0.835 40 H 0.160 0.840 41 H 0.146 0.854 42 H 0.074 0.926 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.692 5.193 3.392 6.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.324 6.324 3 C -0.008 4.008 4 H 0.116 0.884 5 C -0.168 4.168 6 C -0.118 4.118 7 H 0.125 0.875 8 C -0.144 4.144 9 C -0.003 4.003 10 N -0.853 5.853 11 S 2.798 3.202 12 O -0.982 6.982 13 O -0.975 6.975 14 C -0.759 4.759 15 C 0.020 3.980 16 C -0.254 4.254 17 O -0.343 6.343 18 Si 0.672 3.328 19 C -0.167 4.167 20 C -0.073 4.073 21 C -0.155 4.155 22 C -0.058 4.058 23 C -0.194 4.194 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.264 0.736 34 H 0.124 0.876 35 H 0.249 0.751 36 H -0.202 1.202 37 H -0.207 1.207 38 H 0.167 0.833 39 H 0.183 0.817 40 H 0.178 0.822 41 H 0.163 0.837 42 H 0.093 0.907 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.584 5.264 2.995 6.085 hybrid contribution -0.491 -0.595 1.031 1.288 sum -1.074 4.670 4.026 6.259 Atomic orbital electron populations 1.22923 0.80119 1.03499 1.00649 1.87911 1.21010 1.28712 1.94762 1.23967 0.94436 0.84943 0.97410 0.88404 1.23254 0.94873 1.00165 0.98484 1.22246 0.93693 0.99799 0.96099 0.87548 1.21631 0.96009 0.98498 0.98244 1.21302 0.80514 1.00000 0.98437 1.54968 1.21950 1.63492 1.44928 1.01162 0.72393 0.73858 0.72816 1.93540 1.61982 1.84555 1.58155 1.93513 1.35219 1.82835 1.85911 1.30567 1.09432 1.25995 1.09877 1.18995 0.92457 0.94565 0.91934 1.25611 1.01392 1.02787 0.95614 1.86558 1.37299 1.62366 1.48095 0.93521 0.76832 0.79509 0.82892 1.21535 1.01081 0.92747 1.01369 1.21872 0.91655 1.01832 0.91917 1.21713 1.00132 0.94606 0.99071 1.21248 0.94043 0.94942 0.95531 1.23654 0.97901 1.00824 0.97053 0.93104 0.93445 0.89191 0.89837 0.90092 0.91263 0.89566 0.91157 0.91307 0.73607 0.87638 0.75132 1.20245 1.20747 0.83306 0.81738 0.82240 0.83663 0.90696 0.90184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.00 10.85 113.37 1.23 1.23 16 2 O -0.40 -2.17 10.72 -148.98 -1.60 -3.76 16 3 C 0.05 0.03 4.31 31.18 0.13 0.17 16 4 H 0.10 -0.21 7.87 -2.39 -0.02 -0.23 16 5 C -0.13 0.17 7.48 31.12 0.23 0.40 16 6 C -0.10 0.31 3.64 -10.26 -0.04 0.27 16 7 H 0.11 -0.55 8.14 -2.39 -0.02 -0.57 16 8 C -0.10 0.36 5.18 30.59 0.16 0.52 16 9 C 0.12 -0.16 6.22 86.38 0.54 0.38 16 10 N -1.09 -0.11 4.26 -187.49 -0.80 -0.91 16 11 S 2.71 17.08 5.07 -56.49 -0.29 16.79 16 12 O -0.99 -11.99 16.45 -128.00 -2.11 -14.09 16 13 O -0.98 -10.14 15.51 -128.00 -1.99 -12.13 16 14 C -0.67 -2.81 5.87 22.27 0.13 -2.68 16 15 C 0.02 0.05 5.28 -19.87 -0.10 -0.06 16 16 C -0.15 0.02 2.02 71.24 0.14 0.16 16 17 O -0.53 1.46 10.57 -148.98 -1.57 -0.12 16 18 Si 0.77 -2.17 30.22 68.60 2.07 -0.10 16 19 C -0.15 0.13 8.66 22.27 0.19 0.32 16 20 C -0.05 0.19 10.05 22.27 0.22 0.41 16 21 C -0.14 0.28 10.05 22.27 0.22 0.51 16 22 C -0.04 -0.09 9.55 22.27 0.21 0.12 16 23 C -0.16 0.02 7.48 31.18 0.23 0.26 16 24 H 0.05 -0.11 8.14 -2.38 -0.02 -0.12 16 25 H 0.05 -0.06 8.14 -2.39 -0.02 -0.08 16 26 H 0.09 -0.12 8.14 -2.39 -0.02 -0.14 16 27 H 0.08 0.05 8.10 -2.38 -0.02 0.03 16 28 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 29 H 0.07 -0.15 7.87 -2.39 -0.02 -0.16 16 30 H 0.09 -0.47 8.14 -2.38 -0.02 -0.48 16 31 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 32 H 0.07 0.03 7.75 -2.38 -0.02 0.01 16 33 H 0.43 -1.60 8.18 -96.73 -0.79 -2.39 16 34 H 0.11 0.13 5.38 -2.39 -0.01 0.11 16 35 H 0.40 -3.99 8.74 -74.06 -0.65 -4.64 16 36 H -0.28 -0.27 6.73 99.48 0.67 0.40 16 37 H -0.28 -0.35 7.11 99.48 0.71 0.35 16 38 H 0.15 -0.62 4.91 -2.91 -0.01 -0.63 16 39 H 0.17 -1.59 8.06 -2.91 -0.02 -1.61 16 40 H 0.16 -1.18 8.06 -2.91 -0.02 -1.20 16 41 H 0.15 0.21 7.34 -2.91 -0.02 0.19 16 42 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 43 H 0.08 0.20 7.92 -2.39 -0.02 0.18 16 Total: 0.00 -20.66 358.55 -3.17 -23.83 By element: Atomic # 1 Polarization: -11.13 SS G_CDS: -0.41 Total: -11.54 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 3.51 Total: 2.03 kcal Atomic # 7 Polarization: -0.11 SS G_CDS: -0.80 Total: -0.91 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -7.26 Total: -30.10 kcal Atomic # 14 Polarization: -2.17 SS G_CDS: 2.07 Total: -0.10 kcal Atomic # 16 Polarization: 17.08 SS G_CDS: -0.29 Total: 16.79 kcal Total: -20.66 -3.17 -23.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16488028_2726874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.937 kcal (2) G-P(sol) polarization free energy of solvation -20.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds