Wall clock time and date at job start Mon Mar 8 2021 10:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47338 * 344.33452 * 3 2 1 5 5 C 1.53004 * 109.47411 * 104.33567 * 3 2 1 6 6 C 1.52994 * 109.46976 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47356 * 299.99966 * 6 5 3 8 8 H 1.09003 * 109.47264 * 299.99911 * 7 6 5 9 9 C 1.53005 * 109.46947 * 180.02562 * 7 6 5 10 10 N 1.46503 * 109.47179 * 64.99982 * 9 7 6 11 11 S 1.65598 * 119.99746 * 164.99904 * 10 9 7 12 12 O 1.42100 * 106.40470 * 311.45996 * 11 10 9 13 13 O 1.42100 * 106.40129 * 178.53852 * 11 10 9 14 14 C 1.76196 * 107.21942 * 64.99934 * 11 10 9 15 15 C 1.38241 * 120.00035 * 89.99801 * 14 11 10 16 16 C 1.38226 * 120.00359 * 179.97438 * 15 14 11 17 17 C 1.38239 * 120.00059 * 359.97438 * 16 15 14 18 18 C 1.50699 * 120.00194 * 180.02562 * 17 16 15 19 19 O 1.42895 * 109.47158 * 299.99562 * 18 17 16 20 20 Si 1.86300 * 109.46944 * 180.02562 * 18 17 16 21 21 C 1.38240 * 119.99775 * 0.27275 * 17 16 15 22 22 C 1.38230 * 120.00415 * 269.97730 * 14 11 10 23 23 C 1.52997 * 109.47142 * 60.00557 * 7 6 5 24 24 C 1.52999 * 109.46953 * 224.33552 * 3 2 1 25 25 H 1.08996 * 109.46966 * 300.00031 * 5 3 2 26 26 H 1.09000 * 109.46963 * 59.99656 * 5 3 2 27 27 H 1.09004 * 109.46656 * 180.02562 * 6 5 3 28 28 H 1.08996 * 109.47307 * 60.00640 * 6 5 3 29 29 H 1.08997 * 109.47175 * 304.99737 * 9 7 6 30 30 H 1.08997 * 109.47192 * 184.99907 * 9 7 6 31 31 H 0.97001 * 120.00202 * 345.00119 * 10 9 7 32 32 H 1.08001 * 120.00003 * 359.97438 * 15 14 11 33 33 H 1.07997 * 120.00507 * 179.97438 * 16 15 14 34 34 H 1.09000 * 109.47247 * 60.00015 * 18 17 16 35 35 H 0.96698 * 114.00355 * 300.00487 * 19 18 17 36 36 H 1.48506 * 110.00048 * 180.02562 * 20 18 17 37 37 H 1.48502 * 109.99996 * 301.31619 * 20 18 17 38 38 H 1.07995 * 119.99876 * 179.72335 * 21 17 16 39 39 H 1.08003 * 119.99811 * 359.97438 * 22 14 11 40 40 H 1.08998 * 109.47186 * 59.99229 * 23 7 6 41 41 H 1.09002 * 109.47042 * 180.02562 * 23 7 6 42 42 H 1.09004 * 109.47176 * 60.00108 * 24 3 2 43 43 H 1.09003 * 109.47264 * 299.99624 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 1 2.9718 -0.9887 0.2775 5 6 3.1179 0.3581 -1.3976 6 6 4.6479 0.3593 -1.3973 7 6 5.1569 1.3917 -0.3893 8 1 4.7928 2.3809 -0.6670 9 6 6.6869 1.3933 -0.3896 10 7 7.1746 1.8512 -1.6930 11 16 8.7561 2.3087 -1.8712 12 8 9.0398 3.1979 -0.7997 13 8 8.9202 2.6613 -3.2379 14 6 9.7467 0.8762 -1.6045 15 6 10.0781 0.0572 -2.6677 16 6 10.8556 -1.0663 -2.4587 17 6 11.3024 -1.3707 -1.1864 18 6 12.1507 -2.5953 -0.9585 19 8 11.4236 -3.7592 -1.3566 20 14 12.5842 -2.7228 0.8488 21 6 10.9669 -0.5546 -0.1223 22 6 10.1930 0.5715 -0.3322 23 6 4.6471 1.0342 1.0083 24 6 3.1175 1.0327 1.0081 25 1 2.7549 -0.3771 -2.1158 26 1 2.7541 1.3474 -1.6751 27 1 5.0111 0.6144 -2.3929 28 1 5.0120 -0.6298 -1.1198 29 1 7.0514 0.3838 -0.1994 30 1 7.0497 2.0633 0.3898 31 1 6.5711 1.8863 -2.4516 32 1 9.7294 0.2952 -3.6618 33 1 11.1142 -1.7064 -3.2892 34 1 13.0648 -2.5189 -1.5473 35 1 10.5966 -3.8909 -0.8731 36 1 13.4213 -3.9262 1.0867 37 1 13.3128 -1.5040 1.2836 38 1 11.3122 -0.7948 0.8724 39 1 9.9347 1.2117 0.4984 40 1 5.0111 0.0450 1.2858 41 1 5.0094 1.7700 1.7263 42 1 2.7543 0.7780 2.0038 43 1 2.7538 2.0220 0.7306 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16496582_13421422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:44:15 Heat of formation + Delta-G solvation = -63.920743 kcal Electronic energy + Delta-G solvation = -26785.965422 eV Core-core repulsion = 22924.055424 eV Total energy + Delta-G solvation = -3861.909999 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.118 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -40.79923 -40.53131 -38.30642 -37.84651 -37.65517 -36.89076 -36.06984 -33.11705 -32.44035 -32.30520 -31.98472 -27.34036 -27.15384 -24.21046 -24.02957 -23.27282 -23.08051 -21.23801 -20.60221 -19.31951 -18.85981 -18.63669 -18.23252 -17.52138 -16.90691 -16.61982 -16.53913 -16.14552 -15.92058 -15.58773 -15.52541 -15.40656 -14.93682 -14.88668 -14.67882 -14.53313 -14.37652 -14.06166 -13.93791 -13.72074 -13.54383 -13.47005 -13.14102 -13.07742 -12.96593 -12.79691 -12.74166 -12.47654 -12.36243 -12.25985 -12.02201 -11.87019 -11.83301 -11.52642 -11.33006 -10.81957 -10.66539 -10.41822 -10.25407 -5.21883 -0.76051 -0.43086 0.08222 1.07462 1.46936 1.76682 1.79867 1.81719 1.84305 2.26021 2.69421 2.79849 3.17874 3.21456 3.35080 3.41266 3.44439 3.49123 3.65397 3.70479 3.78913 3.91844 4.01464 4.05137 4.11537 4.17690 4.21121 4.23709 4.24566 4.27586 4.39030 4.48206 4.56331 4.66640 4.70287 4.73739 4.82442 4.84260 4.87946 4.89183 4.91683 4.94259 5.07612 5.13700 5.22413 5.58660 5.78498 6.33552 6.57932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.205 3.795 3 C 0.008 3.992 4 H 0.115 0.885 5 C -0.113 4.113 6 C -0.115 4.115 7 C -0.099 4.099 8 H 0.086 0.914 9 C 0.117 3.883 10 N -1.116 6.116 11 S 2.695 3.305 12 O -0.952 6.952 13 O -0.956 6.956 14 C -0.674 4.674 15 C -0.016 4.016 16 C -0.114 4.114 17 C -0.063 4.063 18 C -0.078 4.078 19 O -0.535 6.535 20 Si 0.691 3.309 21 C -0.139 4.139 22 C -0.016 4.016 23 C -0.112 4.112 24 C -0.112 4.112 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.420 0.580 32 H 0.143 0.857 33 H 0.137 0.863 34 H 0.120 0.880 35 H 0.380 0.620 36 H -0.251 1.251 37 H -0.255 1.255 38 H 0.137 0.863 39 H 0.146 0.854 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.675 -3.546 3.073 4.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.107 5.107 2 C -0.113 4.113 3 C -0.013 4.013 4 H 0.133 0.867 5 C -0.152 4.152 6 C -0.153 4.153 7 C -0.119 4.119 8 H 0.104 0.896 9 C -0.009 4.009 10 N -0.877 5.877 11 S 2.784 3.216 12 O -0.942 6.942 13 O -0.946 6.946 14 C -0.761 4.761 15 C -0.035 4.035 16 C -0.133 4.133 17 C -0.064 4.064 18 C -0.189 4.189 19 O -0.340 6.340 20 Si 0.593 3.407 21 C -0.157 4.157 22 C -0.035 4.035 23 C -0.151 4.151 24 C -0.151 4.151 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.256 0.744 32 H 0.161 0.839 33 H 0.155 0.845 34 H 0.137 0.863 35 H 0.228 0.772 36 H -0.176 1.176 37 H -0.180 1.180 38 H 0.154 0.846 39 H 0.163 0.837 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.539 -2.814 3.233 4.320 hybrid contribution 0.486 -0.565 -0.845 1.127 sum 1.025 -3.379 2.388 4.262 Atomic orbital electron populations 1.81293 1.13045 1.08365 1.08042 1.29245 0.95157 0.93421 0.93503 1.18970 0.81203 1.02777 0.98395 0.86697 1.21577 0.96116 1.03194 0.94307 1.21624 0.94313 0.99775 0.99590 1.21448 0.93342 1.00794 0.96272 0.89565 1.21446 0.95526 1.00106 0.83786 1.55546 1.28528 1.84962 1.18696 1.01901 0.72466 0.73649 0.73557 1.93611 1.83812 1.60145 1.56661 1.93622 1.85157 1.81816 1.33967 1.31011 1.20655 1.23766 1.00658 1.21003 0.92950 0.91680 0.97913 1.21189 0.97989 0.97113 0.97002 1.20751 0.95628 0.95898 0.94089 1.25234 0.96829 0.83787 1.13011 1.86540 1.39292 1.42172 1.66039 0.94743 0.88001 0.81002 0.76997 1.21169 1.00104 0.95927 0.98539 1.20916 0.92510 0.94839 0.95213 1.21532 0.94417 1.03060 0.96061 1.21558 0.96025 0.98825 0.98667 0.90655 0.90756 0.90967 0.90768 0.91219 0.89724 0.74439 0.83905 0.84514 0.86260 0.77220 1.17612 1.17999 0.84581 0.83671 0.90734 0.90426 0.90527 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -1.67 18.54 42.16 0.78 -0.89 16 2 C 0.21 -0.03 14.65 -20.76 -0.30 -0.33 16 3 C 0.01 -0.04 2.57 -93.41 -0.24 -0.28 16 4 H 0.12 -0.72 8.14 -51.93 -0.42 -1.14 16 5 C -0.11 0.57 5.16 -26.73 -0.14 0.43 16 6 C -0.12 0.71 5.08 -26.73 -0.14 0.57 16 7 C -0.10 0.58 2.29 -90.62 -0.21 0.37 16 8 H 0.09 -0.46 8.14 -51.93 -0.42 -0.88 16 9 C 0.12 -0.61 5.61 -4.04 -0.02 -0.64 16 10 N -1.12 4.29 5.88 -10.61 -0.06 4.23 16 11 S 2.70 -0.91 5.74 -107.50 -0.62 -1.53 16 12 O -0.95 -2.43 16.75 -57.17 -0.96 -3.38 16 13 O -0.96 -2.79 17.28 -57.17 -0.99 -3.77 16 14 C -0.67 0.67 5.95 -39.58 -0.24 0.44 16 15 C -0.02 0.02 9.52 -39.58 -0.38 -0.36 16 16 C -0.11 0.12 9.61 -39.59 -0.38 -0.26 16 17 C -0.06 0.10 5.39 -104.62 -0.56 -0.46 16 18 C -0.08 0.15 2.82 36.01 0.10 0.26 16 19 O -0.54 0.91 12.77 -35.23 -0.45 0.46 16 20 Si 0.69 -1.84 29.79 -169.99 -5.06 -6.91 16 21 C -0.14 0.31 8.67 -39.58 -0.34 -0.04 16 22 C -0.02 0.03 9.52 -39.58 -0.38 -0.35 16 23 C -0.11 0.70 5.20 -26.75 -0.14 0.57 16 24 C -0.11 0.57 5.16 -26.75 -0.14 0.43 16 25 H 0.07 -0.36 8.14 -51.93 -0.42 -0.78 16 26 H 0.07 -0.33 8.14 -51.93 -0.42 -0.75 16 27 H 0.07 -0.45 6.90 -51.93 -0.36 -0.81 16 28 H 0.07 -0.50 8.14 -51.93 -0.42 -0.92 16 29 H 0.07 -0.47 8.14 -51.93 -0.42 -0.89 16 30 H 0.08 -0.42 7.75 -51.93 -0.40 -0.82 16 31 H 0.42 -2.19 7.41 -34.47 -0.26 -2.44 16 32 H 0.14 -0.28 7.62 -52.49 -0.40 -0.68 16 33 H 0.14 -0.24 8.06 -52.49 -0.42 -0.67 16 34 H 0.12 -0.17 7.96 -51.93 -0.41 -0.59 16 35 H 0.38 -2.19 8.70 45.56 0.40 -1.79 16 36 H -0.25 -0.20 7.11 56.52 0.40 0.20 16 37 H -0.26 0.05 7.11 56.52 0.40 0.45 16 38 H 0.14 -0.58 4.88 -52.49 -0.26 -0.83 16 39 H 0.15 -0.49 7.62 -52.48 -0.40 -0.89 16 40 H 0.07 -0.53 8.14 -51.93 -0.42 -0.96 16 41 H 0.08 -0.48 8.14 -51.93 -0.42 -0.90 16 42 H 0.08 -0.38 8.14 -51.93 -0.42 -0.80 16 43 H 0.07 -0.33 8.14 -51.93 -0.42 -0.75 16 LS Contribution 366.47 15.07 5.52 5.52 Total: 0.00 -12.28 366.47 -11.27 -23.55 By element: Atomic # 1 Polarization: -11.70 SS G_CDS: -5.94 Total: -17.64 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -3.50 Total: 0.35 kcal Atomic # 7 Polarization: 2.62 SS G_CDS: 0.72 Total: 3.34 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -2.40 Total: -6.70 kcal Atomic # 14 Polarization: -1.84 SS G_CDS: -5.06 Total: -6.91 kcal Atomic # 16 Polarization: -0.91 SS G_CDS: -0.62 Total: -1.53 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -12.28 -11.27 -23.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16496582_13421422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.370 kcal (2) G-P(sol) polarization free energy of solvation -12.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds