Wall clock time and date at job start Mon Mar 8 2021 10:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47338 * 344.33452 * 3 2 1 5 5 C 1.53004 * 109.47411 * 104.33567 * 3 2 1 6 6 C 1.52994 * 109.46976 * 179.97438 * 5 3 2 7 7 C 1.52999 * 109.47356 * 299.99966 * 6 5 3 8 8 H 1.09003 * 109.47264 * 299.99911 * 7 6 5 9 9 C 1.53005 * 109.46947 * 180.02562 * 7 6 5 10 10 N 1.46503 * 109.47179 * 64.99982 * 9 7 6 11 11 S 1.65598 * 119.99746 * 164.99904 * 10 9 7 12 12 O 1.42100 * 106.40470 * 311.45996 * 11 10 9 13 13 O 1.42100 * 106.40129 * 178.53852 * 11 10 9 14 14 C 1.76196 * 107.21942 * 64.99934 * 11 10 9 15 15 C 1.38241 * 120.00035 * 89.99801 * 14 11 10 16 16 C 1.38226 * 120.00359 * 179.97438 * 15 14 11 17 17 C 1.38239 * 120.00059 * 359.97438 * 16 15 14 18 18 C 1.50699 * 120.00194 * 180.02562 * 17 16 15 19 19 O 1.42895 * 109.47158 * 299.99562 * 18 17 16 20 20 Si 1.86300 * 109.46944 * 180.02562 * 18 17 16 21 21 C 1.38240 * 119.99775 * 0.27275 * 17 16 15 22 22 C 1.38230 * 120.00415 * 269.97730 * 14 11 10 23 23 C 1.52997 * 109.47142 * 60.00557 * 7 6 5 24 24 C 1.52999 * 109.46953 * 224.33552 * 3 2 1 25 25 H 1.08996 * 109.46966 * 300.00031 * 5 3 2 26 26 H 1.09000 * 109.46963 * 59.99656 * 5 3 2 27 27 H 1.09004 * 109.46656 * 180.02562 * 6 5 3 28 28 H 1.08996 * 109.47307 * 60.00640 * 6 5 3 29 29 H 1.08997 * 109.47175 * 304.99737 * 9 7 6 30 30 H 1.08997 * 109.47192 * 184.99907 * 9 7 6 31 31 H 0.97001 * 120.00202 * 345.00119 * 10 9 7 32 32 H 1.08001 * 120.00003 * 359.97438 * 15 14 11 33 33 H 1.07997 * 120.00507 * 179.97438 * 16 15 14 34 34 H 1.09000 * 109.47247 * 60.00015 * 18 17 16 35 35 H 0.96698 * 114.00355 * 300.00487 * 19 18 17 36 36 H 1.48506 * 110.00048 * 180.02562 * 20 18 17 37 37 H 1.48502 * 109.99996 * 301.31619 * 20 18 17 38 38 H 1.07995 * 119.99876 * 179.72335 * 21 17 16 39 39 H 1.08003 * 119.99811 * 359.97438 * 22 14 11 40 40 H 1.08998 * 109.47186 * 59.99229 * 23 7 6 41 41 H 1.09002 * 109.47042 * 180.02562 * 23 7 6 42 42 H 1.09004 * 109.47176 * 60.00108 * 24 3 2 43 43 H 1.09003 * 109.47264 * 299.99624 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 1 2.9718 -0.9887 0.2775 5 6 3.1179 0.3581 -1.3976 6 6 4.6479 0.3593 -1.3973 7 6 5.1569 1.3917 -0.3893 8 1 4.7928 2.3809 -0.6670 9 6 6.6869 1.3933 -0.3896 10 7 7.1746 1.8512 -1.6930 11 16 8.7561 2.3087 -1.8712 12 8 9.0398 3.1979 -0.7997 13 8 8.9202 2.6613 -3.2379 14 6 9.7467 0.8762 -1.6045 15 6 10.0781 0.0572 -2.6677 16 6 10.8556 -1.0663 -2.4587 17 6 11.3024 -1.3707 -1.1864 18 6 12.1507 -2.5953 -0.9585 19 8 11.4236 -3.7592 -1.3566 20 14 12.5842 -2.7228 0.8488 21 6 10.9669 -0.5546 -0.1223 22 6 10.1930 0.5715 -0.3322 23 6 4.6471 1.0342 1.0083 24 6 3.1175 1.0327 1.0081 25 1 2.7549 -0.3771 -2.1158 26 1 2.7541 1.3474 -1.6751 27 1 5.0111 0.6144 -2.3929 28 1 5.0120 -0.6298 -1.1198 29 1 7.0514 0.3838 -0.1994 30 1 7.0497 2.0633 0.3898 31 1 6.5711 1.8863 -2.4516 32 1 9.7294 0.2952 -3.6618 33 1 11.1142 -1.7064 -3.2892 34 1 13.0648 -2.5189 -1.5473 35 1 10.5966 -3.8909 -0.8731 36 1 13.4213 -3.9262 1.0867 37 1 13.3128 -1.5040 1.2836 38 1 11.3122 -0.7948 0.8724 39 1 9.9347 1.2117 0.4984 40 1 5.0111 0.0450 1.2858 41 1 5.0094 1.7700 1.7263 42 1 2.7543 0.7780 2.0038 43 1 2.7538 2.0220 0.7306 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16496582_13421422.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:44:14 Heat of formation + Delta-G solvation = -67.670386 kcal Electronic energy + Delta-G solvation = -26786.128019 eV Core-core repulsion = 22924.055424 eV Total energy + Delta-G solvation = -3862.072595 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.118 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.63854 -40.14997 -38.37269 -37.67847 -37.59362 -36.97095 -35.86789 -32.96910 -32.14370 -32.10084 -31.55994 -27.19142 -26.80867 -24.04427 -23.59149 -22.96017 -22.90310 -20.82251 -20.44422 -19.17269 -18.64627 -18.51078 -18.11857 -17.36588 -16.71879 -16.36765 -16.28021 -15.98300 -15.76449 -15.43828 -15.21125 -15.09241 -14.77007 -14.70397 -14.43754 -14.33616 -14.23673 -13.93052 -13.83280 -13.60102 -13.44198 -13.24825 -13.16604 -13.03106 -12.75711 -12.60077 -12.56838 -12.38204 -11.98297 -11.90197 -11.89191 -11.73275 -11.41256 -11.09959 -10.90833 -10.64052 -10.35094 -10.26659 -10.10051 -5.02833 -0.67011 -0.32789 0.23835 1.25761 1.62635 1.79247 1.82137 1.96631 2.00155 2.39866 2.77678 2.99547 3.27765 3.44284 3.54236 3.80983 3.84054 3.87304 3.88166 3.93049 4.18393 4.24457 4.30229 4.38606 4.41629 4.44274 4.56147 4.58800 4.64416 4.67582 4.69729 4.88580 4.89348 4.99413 5.01469 5.03350 5.10906 5.16533 5.26538 5.29652 5.31540 5.40031 5.40516 5.55773 5.71013 5.74744 6.14290 6.62260 6.73949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C 0.235 3.765 3 C 0.011 3.989 4 H 0.143 0.857 5 C -0.111 4.111 6 C -0.113 4.113 7 C -0.095 4.095 8 H 0.078 0.922 9 C 0.109 3.891 10 N -1.105 6.105 11 S 2.711 3.289 12 O -0.985 6.985 13 O -0.994 6.994 14 C -0.675 4.675 15 C -0.026 4.026 16 C -0.123 4.123 17 C -0.065 4.065 18 C -0.082 4.082 19 O -0.550 6.550 20 Si 0.783 3.217 21 C -0.139 4.139 22 C -0.020 4.020 23 C -0.108 4.108 24 C -0.110 4.110 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.427 0.573 32 H 0.147 0.853 33 H 0.139 0.861 34 H 0.111 0.889 35 H 0.398 0.602 36 H -0.301 1.301 37 H -0.285 1.285 38 H 0.157 0.843 39 H 0.162 0.838 40 H 0.093 0.907 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.225 -4.477 3.932 6.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.186 5.186 2 C -0.082 4.082 3 C -0.010 4.010 4 H 0.161 0.839 5 C -0.150 4.150 6 C -0.150 4.150 7 C -0.115 4.115 8 H 0.096 0.904 9 C -0.016 4.016 10 N -0.869 5.869 11 S 2.802 3.198 12 O -0.974 6.974 13 O -0.984 6.984 14 C -0.763 4.763 15 C -0.046 4.046 16 C -0.142 4.142 17 C -0.065 4.065 18 C -0.192 4.192 19 O -0.359 6.359 20 Si 0.689 3.311 21 C -0.157 4.157 22 C -0.039 4.039 23 C -0.146 4.146 24 C -0.149 4.149 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.265 0.735 32 H 0.164 0.836 33 H 0.157 0.843 34 H 0.129 0.871 35 H 0.248 0.752 36 H -0.229 1.229 37 H -0.212 1.212 38 H 0.174 0.826 39 H 0.179 0.821 40 H 0.112 0.888 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.046 -3.722 4.073 5.616 hybrid contribution 0.369 -0.324 -1.104 1.208 sum 1.416 -4.047 2.969 5.215 Atomic orbital electron populations 1.81309 1.15523 1.11105 1.10703 1.30104 0.95904 0.91040 0.91146 1.19310 0.78207 1.04493 0.99038 0.83932 1.21565 0.97070 1.02622 0.93768 1.21630 0.93114 1.00522 0.99752 1.21412 0.92808 1.00591 0.96723 0.90402 1.21691 0.95869 1.01311 0.82733 1.55252 1.27073 1.84814 1.19739 1.01100 0.73061 0.73589 0.72062 1.93567 1.84705 1.61839 1.57330 1.93566 1.86071 1.82893 1.35893 1.30842 1.21055 1.23252 1.01175 1.21117 0.93287 0.91897 0.98250 1.21296 0.98211 0.97229 0.97499 1.20834 0.95521 0.96061 0.94130 1.25327 0.96607 0.83753 1.13514 1.86503 1.40468 1.42079 1.66806 0.93733 0.86035 0.76523 0.74809 1.21393 0.99584 0.95471 0.99289 1.21182 0.92267 0.95138 0.95333 1.21519 0.93130 1.04248 0.95696 1.21550 0.97024 0.97988 0.98341 0.90783 0.91741 0.90702 0.89175 0.88940 0.89894 0.73522 0.83559 0.84280 0.87138 0.75165 1.22922 1.21209 0.82571 0.82093 0.88834 0.90256 0.90483 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -4.70 18.54 20.00 0.37 -4.33 16 2 C 0.23 0.04 14.65 89.44 1.31 1.35 16 3 C 0.01 -0.11 2.57 -12.60 -0.03 -0.14 16 4 H 0.14 -2.16 8.14 -2.39 -0.02 -2.18 16 5 C -0.11 1.22 5.16 30.59 0.16 1.38 16 6 C -0.11 1.59 5.08 30.59 0.16 1.74 16 7 C -0.10 1.26 2.29 -10.79 -0.02 1.24 16 8 H 0.08 -0.88 8.14 -2.39 -0.02 -0.90 16 9 C 0.11 -1.32 5.61 86.38 0.48 -0.83 16 10 N -1.10 9.20 5.88 -187.48 -1.10 8.10 16 11 S 2.71 -1.29 5.74 -56.49 -0.32 -1.61 16 12 O -0.98 -5.30 16.75 -128.00 -2.14 -7.44 16 13 O -0.99 -6.75 17.28 -128.00 -2.21 -8.96 16 14 C -0.68 1.66 5.95 22.27 0.13 1.79 16 15 C -0.03 0.05 9.52 22.27 0.21 0.26 16 16 C -0.12 0.31 9.61 22.27 0.21 0.52 16 17 C -0.06 0.27 5.39 -19.86 -0.11 0.16 16 18 C -0.08 0.38 2.82 71.24 0.20 0.58 16 19 O -0.55 2.37 12.77 -148.98 -1.90 0.47 16 20 Si 0.78 -4.73 29.79 68.60 2.04 -2.69 16 21 C -0.14 0.82 8.67 22.27 0.19 1.02 16 22 C -0.02 0.10 9.52 22.27 0.21 0.31 16 23 C -0.11 1.56 5.20 30.58 0.16 1.72 16 24 C -0.11 1.24 5.16 30.58 0.16 1.39 16 25 H 0.07 -0.76 8.14 -2.39 -0.02 -0.78 16 26 H 0.06 -0.56 8.14 -2.39 -0.02 -0.58 16 27 H 0.07 -1.05 6.90 -2.38 -0.02 -1.07 16 28 H 0.09 -1.50 8.14 -2.39 -0.02 -1.51 16 29 H 0.09 -1.50 8.14 -2.39 -0.02 -1.52 16 30 H 0.08 -0.93 7.75 -2.39 -0.02 -0.94 16 31 H 0.43 -4.66 7.41 -96.75 -0.72 -5.37 16 32 H 0.15 -0.50 7.62 -2.91 -0.02 -0.53 16 33 H 0.14 -0.49 8.06 -2.91 -0.02 -0.52 16 34 H 0.11 -0.32 7.96 -2.39 -0.02 -0.34 16 35 H 0.40 -5.18 8.70 -74.06 -0.64 -5.82 16 36 H -0.30 -0.69 7.11 99.48 0.71 0.02 16 37 H -0.29 0.30 7.11 99.48 0.71 1.01 16 38 H 0.16 -1.65 4.88 -2.91 -0.01 -1.67 16 39 H 0.16 -1.34 7.62 -2.91 -0.02 -1.36 16 40 H 0.09 -1.65 8.14 -2.39 -0.02 -1.67 16 41 H 0.08 -1.11 8.14 -2.39 -0.02 -1.13 16 42 H 0.08 -0.83 8.14 -2.38 -0.02 -0.85 16 43 H 0.06 -0.56 8.14 -2.39 -0.02 -0.58 16 Total: 0.00 -30.16 366.47 -2.12 -32.28 By element: Atomic # 1 Polarization: -28.02 SS G_CDS: -0.28 Total: -28.30 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 3.43 Total: 12.48 kcal Atomic # 7 Polarization: 4.50 SS G_CDS: -0.73 Total: 3.77 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -6.26 Total: -15.93 kcal Atomic # 14 Polarization: -4.73 SS G_CDS: 2.04 Total: -2.69 kcal Atomic # 16 Polarization: -1.29 SS G_CDS: -0.32 Total: -1.61 kcal Total: -30.16 -2.12 -32.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16496582_13421422.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.389 kcal (2) G-P(sol) polarization free energy of solvation -30.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds