Wall clock time and date at job start Mon Mar 8 2021 10:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 H 1.09003 * 109.47378 * 116.98582 * 3 2 1 5 5 C 1.53007 * 109.47380 * 236.98612 * 3 2 1 6 6 C 1.52997 * 109.47253 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47110 * 299.99957 * 6 5 3 8 8 H 1.08997 * 109.47153 * 299.99673 * 7 6 5 9 9 C 1.53002 * 109.46789 * 180.02562 * 7 6 5 10 10 N 1.46504 * 109.46874 * 174.99880 * 9 7 6 11 11 S 1.65595 * 119.99925 * 165.00154 * 10 9 7 12 12 O 1.42105 * 106.40123 * 311.46021 * 11 10 9 13 13 O 1.42100 * 106.40580 * 178.54142 * 11 10 9 14 14 C 1.76198 * 107.22046 * 65.00015 * 11 10 9 15 15 C 1.33392 * 125.20580 * 149.99837 * 14 11 10 16 16 C 1.50696 * 122.53593 * 0.03075 * 15 14 11 17 17 O 1.42903 * 109.47131 * 284.72766 * 16 15 14 18 18 Si 1.86305 * 109.47185 * 164.73307 * 16 15 14 19 19 C 1.38422 * 114.92351 * 179.76037 * 15 14 11 20 20 C 1.33394 * 114.91806 * 0.24187 * 19 15 14 21 21 S 1.75887 * 109.59601 * 0.02562 * 20 19 15 22 22 C 1.53001 * 109.47158 * 60.00395 * 7 6 5 23 23 C 1.53002 * 109.46950 * 299.99509 * 22 7 6 24 24 H 1.09003 * 109.46890 * 59.99671 * 5 3 2 25 25 H 1.08999 * 109.46457 * 300.00509 * 5 3 2 26 26 H 1.08997 * 109.47013 * 180.02562 * 6 5 3 27 27 H 1.09003 * 109.47025 * 60.00235 * 6 5 3 28 28 H 1.08999 * 109.46958 * 55.00055 * 9 7 6 29 29 H 1.08997 * 109.47061 * 294.99897 * 9 7 6 30 30 H 0.97005 * 119.99923 * 345.00141 * 10 9 7 31 31 H 1.08999 * 109.47358 * 44.73126 * 16 15 14 32 32 H 0.96700 * 114.00311 * 300.00591 * 17 16 15 33 33 H 1.48497 * 110.00233 * 179.97438 * 18 16 15 34 34 H 1.48492 * 109.99800 * 301.31995 * 18 16 15 35 35 H 1.07998 * 122.54435 * 180.27435 * 19 15 14 36 36 H 1.08005 * 125.20252 * 179.97438 * 20 19 15 37 37 H 1.08994 * 109.46946 * 59.99575 * 22 7 6 38 38 H 1.08997 * 109.46944 * 180.02562 * 22 7 6 39 39 H 1.08998 * 109.47469 * 300.00759 * 23 22 7 40 40 H 1.08997 * 109.47175 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 1 2.9711 0.4671 -0.9158 5 6 3.1177 0.7868 1.2096 6 6 4.6476 0.7880 1.2092 7 6 5.1588 -0.6521 1.2848 8 1 4.7961 -1.1188 2.2006 9 6 6.6888 -0.6507 1.2850 10 7 7.1782 -2.0182 1.4773 11 16 8.7606 -2.3842 1.1544 12 8 9.0449 -1.8402 -0.1272 13 8 8.9265 -3.7601 1.4689 14 6 9.7487 -1.4882 2.3056 15 6 10.9344 -1.8829 2.7723 16 6 11.5799 -3.1785 2.3530 17 8 10.9243 -4.2695 3.0027 18 14 13.3795 -3.1600 2.8344 19 6 11.5295 -1.0097 3.6663 20 6 10.8248 0.0919 3.9295 21 16 9.3207 0.0618 3.0184 22 6 4.6492 -1.4382 0.0751 23 6 3.1192 -1.4395 0.0755 24 1 2.7545 0.3204 2.1254 25 1 2.7538 1.8129 1.1555 26 1 5.0107 1.3477 2.0712 27 1 5.0104 1.2549 0.2935 28 1 7.0514 -0.0178 2.0949 29 1 7.0519 -0.2654 0.3323 30 1 6.5754 -2.7091 1.7938 31 1 11.4940 -3.2943 1.2726 32 1 10.9609 -4.2317 3.9682 33 1 14.0275 -4.4325 2.4270 34 1 14.0657 -2.0112 2.1906 35 1 12.4917 -1.2051 4.1162 36 1 11.1307 0.8812 4.6003 37 1 5.0119 -0.9714 -0.8406 38 1 5.0130 -2.4643 0.1292 39 1 2.7564 -1.9062 0.9913 40 1 2.7561 -1.9999 -0.7860 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16496582_13652106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:44:19 Heat of formation + Delta-G solvation = -49.096472 kcal Electronic energy + Delta-G solvation = -25777.502801 eV Core-core repulsion = 22005.387878 eV Total energy + Delta-G solvation = -3772.114924 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.074 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.52196 -40.07734 -38.11964 -37.64571 -37.01223 -36.75510 -36.09697 -32.44249 -31.96567 -31.50479 -28.02170 -27.15646 -24.38086 -23.98092 -23.32451 -21.73580 -21.15204 -19.87464 -19.70161 -18.81788 -18.42315 -18.00651 -17.40167 -16.81082 -16.46923 -16.13421 -15.92265 -15.85977 -15.61464 -15.48412 -15.18463 -14.87926 -14.53161 -14.37207 -14.25095 -13.99309 -13.81661 -13.74551 -13.46023 -13.43785 -13.05254 -13.01081 -12.92096 -12.77135 -12.62033 -12.55919 -12.33187 -12.23520 -12.17047 -11.80958 -11.76186 -11.52903 -11.32114 -10.72744 -10.49457 -10.45689 -9.74711 -5.14424 -0.77486 -0.61384 0.17100 0.51530 1.13614 1.18355 1.58850 1.78828 1.81998 1.89186 1.93612 2.63843 2.81905 3.37896 3.39555 3.41829 3.44412 3.47165 3.63171 3.79414 3.91108 3.95150 4.01724 4.03413 4.13430 4.21921 4.22236 4.26140 4.27546 4.37463 4.55521 4.58320 4.64345 4.74248 4.76817 4.85327 4.89574 4.94189 4.96440 4.97467 5.10001 5.24477 5.78336 6.59493 6.59853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.206 3.794 3 C 0.007 3.993 4 H 0.116 0.884 5 C -0.111 4.111 6 C -0.114 4.114 7 C -0.095 4.095 8 H 0.086 0.914 9 C 0.113 3.887 10 N -1.114 6.114 11 S 2.707 3.293 12 O -0.949 6.949 13 O -0.918 6.918 14 C -0.766 4.766 15 C 0.003 3.997 16 C -0.080 4.080 17 O -0.503 6.503 18 Si 0.698 3.302 19 C -0.159 4.159 20 C -0.164 4.164 21 S 0.201 5.799 22 C -0.118 4.118 23 C -0.113 4.113 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.087 0.913 30 H 0.423 0.577 31 H 0.112 0.888 32 H 0.374 0.626 33 H -0.246 1.246 34 H -0.252 1.252 35 H 0.158 0.842 36 H 0.179 0.821 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.445 4.022 5.881 7.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.108 5.108 2 C -0.112 4.112 3 C -0.015 4.015 4 H 0.134 0.866 5 C -0.149 4.149 6 C -0.152 4.152 7 C -0.115 4.115 8 H 0.104 0.896 9 C -0.013 4.013 10 N -0.877 5.877 11 S 2.790 3.210 12 O -0.939 6.939 13 O -0.908 6.908 14 C -0.966 4.966 15 C -0.015 4.015 16 C -0.193 4.193 17 O -0.307 6.307 18 Si 0.598 3.402 19 C -0.188 4.188 20 C -0.301 4.301 21 S 0.468 5.532 22 C -0.155 4.155 23 C -0.151 4.151 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.259 0.741 31 H 0.130 0.870 32 H 0.220 0.780 33 H -0.170 1.170 34 H -0.177 1.177 35 H 0.175 0.825 36 H 0.196 0.804 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.631 4.443 4.166 6.306 hybrid contribution 1.025 -0.395 0.511 1.211 sum 2.655 4.048 4.677 6.731 Atomic orbital electron populations 1.81283 1.13034 1.08131 1.08349 1.29231 0.95135 0.93457 0.93404 1.18988 0.81211 0.99145 1.02153 0.86618 1.21551 0.95866 1.00620 0.96897 1.21559 0.94546 0.95558 1.03572 1.21422 0.92746 0.97148 1.00161 0.89565 1.21541 0.96070 0.81613 1.02065 1.55582 1.28604 1.18374 1.85129 1.01867 0.72090 0.73547 0.73450 1.93640 1.83780 1.80570 1.35892 1.93741 1.84255 1.28469 1.84289 1.35780 1.16835 1.15215 1.28776 1.19165 0.92057 0.96765 0.93484 1.25187 1.09013 0.84216 1.00865 1.86823 1.78546 1.42042 1.23289 0.94921 0.73007 0.81344 0.90967 1.20218 1.02450 0.94838 1.01328 1.26228 0.98207 1.02148 1.03551 1.84017 1.18585 1.13213 1.37432 1.21640 0.94187 1.01310 0.98376 1.21582 0.96089 0.93744 1.03713 0.90725 0.90513 0.90526 0.90594 0.91781 0.89445 0.74078 0.87049 0.78018 1.17006 1.17654 0.82520 0.80380 0.90627 0.90672 0.90762 0.90575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -1.86 18.54 42.15 0.78 -1.08 16 2 C 0.21 0.09 14.65 -20.76 -0.30 -0.21 16 3 C 0.01 -0.02 2.56 -93.40 -0.24 -0.26 16 4 H 0.12 -0.60 8.14 -51.93 -0.42 -1.02 16 5 C -0.11 0.51 5.16 -26.73 -0.14 0.38 16 6 C -0.11 0.63 5.20 -26.73 -0.14 0.49 16 7 C -0.09 0.47 2.21 -90.62 -0.20 0.27 16 8 H 0.09 -0.48 8.14 -51.93 -0.42 -0.90 16 9 C 0.11 -0.42 5.14 -4.04 -0.02 -0.44 16 10 N -1.11 2.60 5.53 -10.61 -0.06 2.54 16 11 S 2.71 4.24 5.40 -107.50 -0.58 3.66 16 12 O -0.95 -4.37 17.49 -57.17 -1.00 -5.37 16 13 O -0.92 -3.90 15.12 -65.79 -0.99 -4.90 16 14 C -0.77 -0.42 6.48 29.04 0.19 -0.23 16 15 C 0.00 0.00 5.13 -106.25 -0.55 -0.54 16 16 C -0.08 -0.07 1.86 36.00 0.07 -0.01 16 17 O -0.50 -0.70 11.06 -55.95 -0.62 -1.32 16 18 Si 0.70 -0.83 30.25 -169.99 -5.14 -5.97 16 19 C -0.16 0.32 8.74 -41.21 -0.36 -0.04 16 20 C -0.16 0.46 11.23 29.04 0.33 0.78 16 21 S 0.20 -0.41 20.66 -107.50 -2.22 -2.64 16 22 C -0.12 0.51 5.09 -26.73 -0.14 0.38 16 23 C -0.11 0.45 5.16 -26.73 -0.14 0.32 16 24 H 0.07 -0.32 8.14 -51.93 -0.42 -0.75 16 25 H 0.08 -0.35 8.14 -51.93 -0.42 -0.77 16 26 H 0.08 -0.46 8.14 -51.93 -0.42 -0.89 16 27 H 0.08 -0.45 8.14 -51.93 -0.42 -0.87 16 28 H 0.06 -0.31 5.83 -51.93 -0.30 -0.61 16 29 H 0.09 -0.28 7.75 -51.93 -0.40 -0.68 16 30 H 0.42 -1.74 8.37 -34.47 -0.29 -2.03 16 31 H 0.11 0.25 7.59 -51.93 -0.39 -0.14 16 32 H 0.37 -1.25 8.70 45.56 0.40 -0.85 16 33 H -0.25 -0.48 7.11 56.52 0.40 -0.07 16 34 H -0.25 -0.24 7.11 56.52 0.40 0.16 16 35 H 0.16 -0.74 5.73 -52.49 -0.30 -1.04 16 36 H 0.18 -0.99 8.06 -52.48 -0.42 -1.41 16 37 H 0.08 -0.33 8.14 -51.93 -0.42 -0.75 16 38 H 0.07 -0.31 7.54 -51.93 -0.39 -0.70 16 39 H 0.07 -0.29 8.14 -51.93 -0.42 -0.71 16 40 H 0.08 -0.27 8.14 -51.93 -0.42 -0.70 16 LS Contribution 349.72 15.07 5.27 5.27 Total: 0.00 -12.34 349.72 -11.31 -23.65 By element: Atomic # 1 Polarization: -9.62 SS G_CDS: -5.11 Total: -14.72 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -1.64 Total: 0.88 kcal Atomic # 7 Polarization: 0.73 SS G_CDS: 0.72 Total: 1.46 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -2.61 Total: -11.58 kcal Atomic # 14 Polarization: -0.83 SS G_CDS: -5.14 Total: -5.97 kcal Atomic # 16 Polarization: 3.82 SS G_CDS: -2.80 Total: 1.02 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -12.34 -11.31 -23.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16496582_13652106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.446 kcal (2) G-P(sol) polarization free energy of solvation -12.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds