Wall clock time and date at job start Mon Mar 8 2021 10:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 H 1.09003 * 109.47378 * 116.98582 * 3 2 1 5 5 C 1.53007 * 109.47380 * 236.98612 * 3 2 1 6 6 C 1.52997 * 109.47253 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.47110 * 299.99957 * 6 5 3 8 8 H 1.08997 * 109.47153 * 299.99673 * 7 6 5 9 9 C 1.53002 * 109.46789 * 180.02562 * 7 6 5 10 10 N 1.46504 * 109.46874 * 174.99880 * 9 7 6 11 11 S 1.65595 * 119.99925 * 165.00154 * 10 9 7 12 12 O 1.42105 * 106.40123 * 311.46021 * 11 10 9 13 13 O 1.42100 * 106.40580 * 178.54142 * 11 10 9 14 14 C 1.76198 * 107.22046 * 65.00015 * 11 10 9 15 15 C 1.33392 * 125.20580 * 149.99837 * 14 11 10 16 16 C 1.50696 * 122.53593 * 0.03075 * 15 14 11 17 17 O 1.42903 * 109.47131 * 284.72766 * 16 15 14 18 18 Si 1.86305 * 109.47185 * 164.73307 * 16 15 14 19 19 C 1.38422 * 114.92351 * 179.76037 * 15 14 11 20 20 C 1.33394 * 114.91806 * 0.24187 * 19 15 14 21 21 S 1.75887 * 109.59601 * 0.02562 * 20 19 15 22 22 C 1.53001 * 109.47158 * 60.00395 * 7 6 5 23 23 C 1.53002 * 109.46950 * 299.99509 * 22 7 6 24 24 H 1.09003 * 109.46890 * 59.99671 * 5 3 2 25 25 H 1.08999 * 109.46457 * 300.00509 * 5 3 2 26 26 H 1.08997 * 109.47013 * 180.02562 * 6 5 3 27 27 H 1.09003 * 109.47025 * 60.00235 * 6 5 3 28 28 H 1.08999 * 109.46958 * 55.00055 * 9 7 6 29 29 H 1.08997 * 109.47061 * 294.99897 * 9 7 6 30 30 H 0.97005 * 119.99923 * 345.00141 * 10 9 7 31 31 H 1.08999 * 109.47358 * 44.73126 * 16 15 14 32 32 H 0.96700 * 114.00311 * 300.00591 * 17 16 15 33 33 H 1.48497 * 110.00233 * 179.97438 * 18 16 15 34 34 H 1.48492 * 109.99800 * 301.31995 * 18 16 15 35 35 H 1.07998 * 122.54435 * 180.27435 * 19 15 14 36 36 H 1.08005 * 125.20252 * 179.97438 * 20 19 15 37 37 H 1.08994 * 109.46946 * 59.99575 * 22 7 6 38 38 H 1.08997 * 109.46944 * 180.02562 * 22 7 6 39 39 H 1.08998 * 109.47469 * 300.00759 * 23 22 7 40 40 H 1.08997 * 109.47175 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 1 2.9711 0.4671 -0.9158 5 6 3.1177 0.7868 1.2096 6 6 4.6476 0.7880 1.2092 7 6 5.1588 -0.6521 1.2848 8 1 4.7961 -1.1188 2.2006 9 6 6.6888 -0.6507 1.2850 10 7 7.1782 -2.0182 1.4773 11 16 8.7606 -2.3842 1.1544 12 8 9.0449 -1.8402 -0.1272 13 8 8.9265 -3.7601 1.4689 14 6 9.7487 -1.4882 2.3056 15 6 10.9344 -1.8829 2.7723 16 6 11.5799 -3.1785 2.3530 17 8 10.9243 -4.2695 3.0027 18 14 13.3795 -3.1600 2.8344 19 6 11.5295 -1.0097 3.6663 20 6 10.8248 0.0919 3.9295 21 16 9.3207 0.0618 3.0184 22 6 4.6492 -1.4382 0.0751 23 6 3.1192 -1.4395 0.0755 24 1 2.7545 0.3204 2.1254 25 1 2.7538 1.8129 1.1555 26 1 5.0107 1.3477 2.0712 27 1 5.0104 1.2549 0.2935 28 1 7.0514 -0.0178 2.0949 29 1 7.0519 -0.2654 0.3323 30 1 6.5754 -2.7091 1.7938 31 1 11.4940 -3.2943 1.2726 32 1 10.9609 -4.2317 3.9682 33 1 14.0275 -4.4325 2.4270 34 1 14.0657 -2.0112 2.1906 35 1 12.4917 -1.2051 4.1162 36 1 11.1307 0.8812 4.6003 37 1 5.0119 -0.9714 -0.8406 38 1 5.0130 -2.4643 0.1292 39 1 2.7564 -1.9062 0.9913 40 1 2.7561 -1.9999 -0.7860 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16496582_13652106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:44:18 Heat of formation + Delta-G solvation = -53.244117 kcal Electronic energy + Delta-G solvation = -25777.682657 eV Core-core repulsion = 22005.387878 eV Total energy + Delta-G solvation = -3772.294779 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.074 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.23839 -39.97399 -38.30100 -37.66609 -37.05970 -36.89681 -36.00415 -32.20262 -31.63572 -31.36690 -28.00183 -26.93081 -24.25727 -23.63508 -23.06553 -21.65145 -20.84214 -19.84763 -19.60089 -18.66719 -18.45045 -17.96803 -17.35545 -16.75980 -16.22276 -16.09605 -15.90830 -15.71589 -15.44554 -15.25633 -15.08445 -14.76398 -14.39187 -14.22861 -14.22460 -13.92446 -13.75716 -13.63470 -13.43813 -13.23800 -13.16033 -13.09161 -12.92424 -12.67745 -12.65062 -12.47264 -12.21224 -11.96642 -11.96160 -11.73005 -11.46947 -11.20750 -10.99526 -10.53447 -10.47270 -10.32925 -9.56986 -5.08386 -0.74842 -0.58272 0.29301 0.71050 1.18983 1.33066 1.63273 1.75997 1.78794 1.92667 1.97348 2.58139 2.94260 3.44185 3.47239 3.57450 3.73177 3.79690 3.81592 4.07851 4.10413 4.21209 4.24414 4.31686 4.34113 4.47704 4.50277 4.56765 4.62338 4.73709 4.77189 4.85842 4.95362 5.00865 5.06658 5.15414 5.21024 5.24432 5.32687 5.33707 5.47446 5.62807 6.02264 6.58607 6.80355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C 0.236 3.764 3 C 0.008 3.992 4 H 0.137 0.863 5 C -0.107 4.107 6 C -0.110 4.110 7 C -0.089 4.089 8 H 0.095 0.905 9 C 0.106 3.894 10 N -1.103 6.103 11 S 2.716 3.284 12 O -0.990 6.990 13 O -0.955 6.955 14 C -0.796 4.796 15 C -0.006 4.006 16 C -0.104 4.104 17 O -0.526 6.526 18 Si 0.809 3.191 19 C -0.171 4.171 20 C -0.154 4.154 21 S 0.227 5.773 22 C -0.119 4.119 23 C -0.109 4.109 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.432 0.568 31 H 0.085 0.915 32 H 0.392 0.608 33 H -0.294 1.294 34 H -0.276 1.276 35 H 0.184 0.816 36 H 0.212 0.788 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.380 5.790 7.620 10.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.183 5.183 2 C -0.081 4.081 3 C -0.013 4.013 4 H 0.154 0.846 5 C -0.146 4.146 6 C -0.149 4.149 7 C -0.109 4.109 8 H 0.114 0.886 9 C -0.020 4.020 10 N -0.868 5.868 11 S 2.803 3.197 12 O -0.979 6.979 13 O -0.945 6.945 14 C -0.998 4.998 15 C -0.024 4.024 16 C -0.214 4.214 17 O -0.333 6.333 18 Si 0.711 3.289 19 C -0.200 4.200 20 C -0.291 4.291 21 S 0.494 5.506 22 C -0.156 4.156 23 C -0.148 4.148 24 H 0.091 0.909 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.270 0.730 31 H 0.103 0.897 32 H 0.241 0.759 33 H -0.221 1.221 34 H -0.202 1.202 35 H 0.201 0.799 36 H 0.229 0.771 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.512 6.203 5.906 8.926 hybrid contribution 0.739 -0.924 -0.025 1.184 sum 3.252 5.279 5.881 8.545 Atomic orbital electron populations 1.81302 1.15361 1.10668 1.10963 1.29983 0.95754 0.91200 0.91125 1.19297 0.78456 0.99781 1.03787 0.84552 1.21543 0.96485 1.00456 0.96101 1.21559 0.93600 0.95074 1.04630 1.21409 0.91575 0.97742 1.00222 0.88632 1.21761 0.96992 0.80744 1.02481 1.55267 1.27113 1.19440 1.84975 1.01076 0.72812 0.72765 0.73051 1.93583 1.84769 1.81000 1.38585 1.93683 1.85178 1.30895 1.84736 1.35548 1.17395 1.17122 1.29742 1.19316 0.92162 0.96757 0.94154 1.25533 1.11359 0.84771 0.99773 1.86770 1.78980 1.42484 1.25052 0.93750 0.68956 0.77144 0.89047 1.20439 1.03695 0.94646 1.01183 1.26712 0.97205 1.02371 1.02843 1.83838 1.19038 1.11034 1.36722 1.21653 0.93743 1.01338 0.98912 1.21543 0.96303 0.93387 1.03527 0.90885 0.90252 0.89265 0.89821 0.90325 0.89930 0.73011 0.89694 0.75918 1.22145 1.20225 0.79878 0.77114 0.90462 0.91073 0.90833 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -5.05 18.54 20.00 0.37 -4.68 16 2 C 0.24 0.31 14.65 89.44 1.31 1.62 16 3 C 0.01 -0.07 2.56 -12.60 -0.03 -0.10 16 4 H 0.14 -1.61 8.14 -2.39 -0.02 -1.63 16 5 C -0.11 1.13 5.16 30.60 0.16 1.29 16 6 C -0.11 1.42 5.20 30.59 0.16 1.58 16 7 C -0.09 0.99 2.21 -10.79 -0.02 0.97 16 8 H 0.10 -1.20 8.14 -2.39 -0.02 -1.21 16 9 C 0.11 -0.84 5.14 86.38 0.44 -0.39 16 10 N -1.10 4.56 5.53 -187.48 -1.04 3.52 16 11 S 2.72 13.18 5.40 -56.49 -0.31 12.87 16 12 O -0.99 -11.33 17.49 -128.00 -2.24 -13.57 16 13 O -0.96 -10.50 15.12 -119.76 -1.81 -12.32 16 14 C -0.80 -1.23 6.48 66.72 0.43 -0.79 16 15 C -0.01 0.00 5.13 -20.92 -0.11 -0.11 16 16 C -0.10 -0.33 1.86 71.23 0.13 -0.20 16 17 O -0.53 -2.24 11.06 -129.17 -1.43 -3.67 16 18 Si 0.81 -1.79 30.25 68.60 2.07 0.28 16 19 C -0.17 0.97 8.74 21.22 0.19 1.16 16 20 C -0.15 1.25 11.23 66.72 0.75 2.00 16 21 S 0.23 -1.25 20.66 -56.49 -1.17 -2.42 16 22 C -0.12 1.09 5.09 30.60 0.16 1.24 16 23 C -0.11 0.91 5.16 30.60 0.16 1.07 16 24 H 0.07 -0.72 8.14 -2.39 -0.02 -0.73 16 25 H 0.08 -0.83 8.14 -2.39 -0.02 -0.85 16 26 H 0.09 -1.30 8.14 -2.39 -0.02 -1.32 16 27 H 0.08 -1.16 8.14 -2.39 -0.02 -1.18 16 28 H 0.08 -0.85 5.83 -2.39 -0.01 -0.86 16 29 H 0.08 -0.54 7.75 -2.39 -0.02 -0.55 16 30 H 0.43 -3.31 8.37 -96.74 -0.81 -4.12 16 31 H 0.09 0.65 7.59 -2.39 -0.02 0.63 16 32 H 0.39 -2.36 8.70 -74.06 -0.64 -3.00 16 33 H -0.29 -1.58 7.11 99.48 0.71 -0.88 16 34 H -0.28 -0.43 7.11 99.48 0.71 0.28 16 35 H 0.18 -2.19 5.73 -2.91 -0.02 -2.20 16 36 H 0.21 -3.19 8.06 -2.91 -0.02 -3.21 16 37 H 0.08 -0.71 8.14 -2.39 -0.02 -0.73 16 38 H 0.07 -0.57 7.54 -2.39 -0.02 -0.59 16 39 H 0.07 -0.58 8.14 -2.39 -0.02 -0.60 16 40 H 0.07 -0.50 8.14 -2.39 -0.02 -0.52 16 Total: 0.00 -31.79 349.72 -2.14 -33.94 By element: Atomic # 1 Polarization: -22.95 SS G_CDS: -0.32 Total: -23.28 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: 3.72 Total: 9.33 kcal Atomic # 7 Polarization: -0.50 SS G_CDS: -0.67 Total: -1.16 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -5.48 Total: -29.56 kcal Atomic # 14 Polarization: -1.79 SS G_CDS: 2.07 Total: 0.28 kcal Atomic # 16 Polarization: 11.93 SS G_CDS: -1.47 Total: 10.46 kcal Total: -31.79 -2.14 -33.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16496582_13652106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.309 kcal (2) G-P(sol) polarization free energy of solvation -31.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds