Wall clock time and date at job start Mon Mar 8 2021 10:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.08992 * 109.47342 * 260.04280 * 3 2 1 5 5 C 1.53005 * 109.47366 * 20.04467 * 3 2 1 6 6 C 1.52997 * 109.47154 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47276 * 299.99608 * 6 5 3 8 8 H 1.09004 * 109.47103 * 300.00678 * 7 6 5 9 9 C 1.52997 * 109.47276 * 179.97438 * 7 6 5 10 10 N 1.46506 * 109.46766 * 65.00158 * 9 7 6 11 11 S 1.65599 * 119.99653 * 163.84310 * 10 9 7 12 12 O 1.42103 * 106.40172 * 177.35402 * 11 10 9 13 13 O 1.42106 * 106.40071 * 310.27077 * 11 10 9 14 14 C 1.76198 * 107.22138 * 63.81303 * 11 10 9 15 15 C 1.33387 * 122.54025 * 67.62744 * 14 11 10 16 16 C 1.50710 * 125.20105 * 359.97438 * 15 14 11 17 17 O 1.42894 * 109.47047 * 318.00529 * 16 15 14 18 18 Si 1.86303 * 109.46892 * 198.00620 * 16 15 14 19 19 S 1.75882 * 109.59468 * 180.02562 * 15 14 11 20 20 C 1.75876 * 90.96966 * 359.97438 * 19 15 14 21 21 C 1.33384 * 109.59787 * 359.73386 * 20 19 15 22 22 C 1.53005 * 109.46709 * 60.00120 * 7 6 5 23 23 C 1.52997 * 109.47154 * 299.99955 * 22 7 6 24 24 H 1.09000 * 109.46527 * 299.99969 * 5 3 2 25 25 H 1.09004 * 109.46882 * 59.99302 * 5 3 2 26 26 H 1.09002 * 109.46555 * 179.97438 * 6 5 3 27 27 H 1.09001 * 109.47106 * 59.99964 * 6 5 3 28 28 H 1.08997 * 109.47016 * 185.00463 * 9 7 6 29 29 H 1.09003 * 109.46837 * 305.00278 * 9 7 6 30 30 H 0.96997 * 120.00061 * 343.83929 * 10 9 7 31 31 H 1.09001 * 109.46846 * 78.00836 * 16 15 14 32 32 H 0.96705 * 114.00166 * 179.97438 * 17 16 15 33 33 H 1.48500 * 110.00230 * 59.99950 * 18 16 15 34 34 H 1.48501 * 109.99605 * 181.31933 * 18 16 15 35 35 H 1.08006 * 125.20181 * 180.02562 * 20 19 15 36 36 H 1.07998 * 122.54953 * 180.24017 * 21 20 19 37 37 H 1.09000 * 109.46527 * 179.97438 * 22 7 6 38 38 H 1.09001 * 109.47144 * 59.99968 * 22 7 6 39 39 H 1.09001 * 109.47106 * 300.00036 * 23 22 7 40 40 H 1.09006 * 109.47043 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 1 2.9712 0.1785 1.0121 5 6 3.1186 -1.3543 -0.4944 6 6 4.6486 -1.3533 -0.4950 7 6 5.1576 -0.2474 -1.4218 8 1 4.7939 -0.4255 -2.4338 9 6 6.6876 -0.2461 -1.4219 10 7 7.1769 -1.4973 -2.0062 11 16 8.7517 -1.6183 -2.5039 12 8 8.9275 -2.9533 -2.9582 13 8 9.0039 -0.4809 -3.3177 14 6 9.7658 -1.4418 -1.0739 15 6 9.7972 -2.3524 -0.0997 16 6 8.9949 -3.6280 -0.0767 17 8 7.6661 -3.3632 -0.5307 18 14 8.9359 -4.2931 1.6626 19 16 10.9169 -1.8360 1.1545 20 6 11.2910 -0.3696 0.2585 21 6 10.5950 -0.3506 -0.8792 22 6 4.6469 1.1075 -0.9274 23 6 3.1169 1.1065 -0.9268 24 1 2.7556 -2.1421 0.1656 25 1 2.7553 -1.5321 -1.5066 26 1 5.0123 -2.3187 -0.8468 27 1 5.0122 -1.1752 0.5170 28 1 7.0501 0.5963 -2.0109 29 1 7.0508 -0.1566 -0.3981 30 1 6.5785 -2.2547 -2.1015 31 1 9.4628 -4.3633 -0.7312 32 1 7.0921 -4.1413 -0.5425 33 1 8.3001 -3.2998 2.5650 34 1 8.1745 -5.5677 1.6932 35 1 11.9825 0.3960 0.5782 36 1 10.6694 0.4570 -1.5924 37 1 5.0099 1.8953 -1.5874 38 1 5.0105 1.2855 0.0847 39 1 2.7533 0.9285 -1.9388 40 1 2.7531 2.0720 -0.5750 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16496582_14772022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:44:22 Heat of formation + Delta-G solvation = -46.360428 kcal Electronic energy + Delta-G solvation = -26568.756994 eV Core-core repulsion = 22796.760715 eV Total energy + Delta-G solvation = -3771.996280 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.074 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -40.45398 -39.58064 -38.24210 -37.71204 -37.41312 -36.64770 -35.87052 -32.31395 -32.02127 -31.87409 -27.50203 -26.99744 -24.31481 -23.94945 -23.14127 -21.73465 -21.08848 -19.87087 -19.10711 -18.81614 -18.64567 -18.18741 -17.79941 -17.00777 -16.52648 -16.34283 -15.83336 -15.52264 -15.34467 -15.09426 -15.01274 -14.80996 -14.56283 -14.36370 -14.28741 -14.07603 -13.76493 -13.62553 -13.42555 -13.40242 -13.04835 -12.97248 -12.89923 -12.79394 -12.67441 -12.63644 -12.29652 -12.25133 -12.17329 -11.73263 -11.67834 -11.43367 -11.25345 -11.02545 -10.34867 -10.09825 -9.74514 -5.29739 -0.57131 -0.38722 0.29524 0.60277 0.95206 1.15906 1.38946 1.68329 1.78639 1.81601 2.20527 2.74763 2.83485 3.02546 3.39543 3.47790 3.49663 3.54863 3.69097 3.87507 3.98933 4.08235 4.11308 4.18519 4.19073 4.30055 4.31007 4.33407 4.40386 4.54030 4.65762 4.70759 4.79284 4.86609 4.88622 4.92531 4.96068 4.99614 5.03907 5.14790 5.18804 5.32120 6.02982 6.15955 6.59469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.206 3.794 3 C 0.008 3.992 4 H 0.114 0.886 5 C -0.113 4.113 6 C -0.111 4.111 7 C -0.096 4.096 8 H 0.084 0.916 9 C 0.124 3.876 10 N -1.092 6.092 11 S 2.721 3.279 12 O -0.956 6.956 13 O -0.964 6.964 14 C -0.667 4.667 15 C -0.053 4.053 16 C -0.065 4.065 17 O -0.532 6.532 18 Si 0.668 3.332 19 S 0.157 5.843 20 C -0.213 4.213 21 C -0.076 4.076 22 C -0.113 4.113 23 C -0.111 4.111 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.419 0.581 31 H 0.111 0.889 32 H 0.392 0.608 33 H -0.237 1.237 34 H -0.236 1.236 35 H 0.176 0.824 36 H 0.158 0.842 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.362 -1.115 4.631 6.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.112 4.112 3 C -0.014 4.014 4 H 0.132 0.868 5 C -0.152 4.152 6 C -0.149 4.149 7 C -0.116 4.116 8 H 0.103 0.897 9 C -0.002 4.002 10 N -0.854 5.854 11 S 2.807 3.193 12 O -0.946 6.946 13 O -0.954 6.954 14 C -0.766 4.766 15 C -0.173 4.173 16 C -0.176 4.176 17 O -0.342 6.342 18 Si 0.565 3.435 19 S 0.421 5.579 20 C -0.349 4.349 21 C -0.104 4.104 22 C -0.151 4.151 23 C -0.150 4.150 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.256 0.744 31 H 0.129 0.871 32 H 0.243 0.757 33 H -0.160 1.160 34 H -0.159 1.159 35 H 0.193 0.807 36 H 0.175 0.825 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.298 -1.294 5.858 6.846 hybrid contribution -0.968 0.195 -1.126 1.498 sum 2.331 -1.099 4.731 5.388 Atomic orbital electron populations 1.81279 1.13040 1.08095 1.08438 1.29261 0.95168 0.93453 0.93367 1.18977 0.81148 0.98300 1.02959 0.86825 1.21594 0.96411 0.94676 1.02507 1.21583 0.93778 0.99115 1.00429 1.21412 0.93710 0.95685 1.00797 0.89749 1.21298 0.94982 0.85505 0.98439 1.55275 1.28423 1.21565 1.80155 1.01154 0.72289 0.73243 0.72609 1.93562 1.85193 1.36813 1.79074 1.93584 1.84726 1.52941 1.64131 1.29928 1.20260 1.03486 1.22905 1.23755 0.99456 0.97606 0.96521 1.24474 0.84707 0.96032 1.12422 1.86466 1.21142 1.39256 1.87313 0.94965 0.92399 0.81406 0.74723 1.84213 1.37598 1.15501 1.20622 1.25899 1.07579 1.01849 0.99527 1.19769 0.95139 0.97617 0.97922 1.21545 0.94276 0.96777 1.02542 1.21559 0.96113 0.97568 0.99751 0.90871 0.90808 0.90759 0.91060 0.90294 0.91824 0.74413 0.87103 0.75698 1.16027 1.15875 0.80698 0.82453 0.90509 0.90940 0.90736 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -1.96 18.54 42.15 0.78 -1.18 16 2 C 0.21 0.15 14.65 -20.76 -0.30 -0.16 16 3 C 0.01 -0.03 2.57 -93.40 -0.24 -0.27 16 4 H 0.11 -0.55 8.14 -51.93 -0.42 -0.98 16 5 C -0.11 0.46 5.16 -26.73 -0.14 0.32 16 6 C -0.11 0.53 5.07 -26.73 -0.14 0.40 16 7 C -0.10 0.40 2.30 -90.62 -0.21 0.19 16 8 H 0.08 -0.33 8.14 -51.93 -0.42 -0.75 16 9 C 0.12 -0.35 5.61 -4.04 -0.02 -0.38 16 10 N -1.09 2.02 4.08 -10.61 -0.04 1.98 16 11 S 2.72 4.40 4.91 -107.50 -0.53 3.87 16 12 O -0.96 -3.68 16.53 -63.65 -1.05 -4.74 16 13 O -0.96 -4.44 16.84 -57.17 -0.96 -5.40 16 14 C -0.67 -0.50 5.75 -41.21 -0.24 -0.74 16 15 C -0.05 0.02 5.77 -36.00 -0.21 -0.18 16 16 C -0.07 0.15 2.13 36.01 0.08 0.22 16 17 O -0.53 1.88 7.89 -49.07 -0.39 1.49 16 18 Si 0.67 -2.07 31.13 -169.99 -5.29 -7.37 16 19 S 0.16 -0.25 20.79 -107.50 -2.24 -2.49 16 20 C -0.21 0.24 11.23 29.04 0.33 0.57 16 21 C -0.08 -0.02 9.70 -41.21 -0.40 -0.42 16 22 C -0.11 0.51 5.20 -26.73 -0.14 0.37 16 23 C -0.11 0.43 5.16 -26.73 -0.14 0.29 16 24 H 0.07 -0.28 8.14 -51.93 -0.42 -0.71 16 25 H 0.07 -0.26 8.14 -51.93 -0.42 -0.69 16 26 H 0.07 -0.40 6.88 -51.93 -0.36 -0.76 16 27 H 0.07 -0.34 8.14 -51.93 -0.42 -0.76 16 28 H 0.08 -0.18 7.76 -51.93 -0.40 -0.58 16 29 H 0.06 -0.21 8.14 -51.93 -0.42 -0.63 16 30 H 0.42 -1.49 6.27 -34.47 -0.22 -1.71 16 31 H 0.11 -0.30 7.92 -51.93 -0.41 -0.71 16 32 H 0.39 -2.84 8.74 45.56 0.40 -2.44 16 33 H -0.24 0.14 7.11 56.52 0.40 0.55 16 34 H -0.24 0.39 7.11 56.52 0.40 0.80 16 35 H 0.18 -0.60 8.06 -52.48 -0.42 -1.02 16 36 H 0.16 -0.05 7.74 -52.49 -0.41 -0.46 16 37 H 0.08 -0.34 8.14 -51.93 -0.42 -0.76 16 38 H 0.07 -0.36 8.14 -51.93 -0.42 -0.79 16 39 H 0.07 -0.25 8.14 -51.93 -0.42 -0.67 16 40 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 LS Contribution 350.01 15.07 5.27 5.27 Total: 0.00 -10.64 350.01 -11.46 -22.10 By element: Atomic # 1 Polarization: -8.52 SS G_CDS: -5.24 Total: -13.77 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -1.77 Total: 0.22 kcal Atomic # 7 Polarization: 0.06 SS G_CDS: 0.74 Total: 0.80 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -2.40 Total: -8.64 kcal Atomic # 14 Polarization: -2.07 SS G_CDS: -5.29 Total: -7.37 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -2.76 Total: 1.38 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -10.64 -11.46 -22.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16496582_14772022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.264 kcal (2) G-P(sol) polarization free energy of solvation -10.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds