Wall clock time and date at job start Mon Mar 8 2021 10:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.08992 * 109.47342 * 260.04280 * 3 2 1 5 5 C 1.53005 * 109.47366 * 20.04467 * 3 2 1 6 6 C 1.52997 * 109.47154 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47276 * 299.99608 * 6 5 3 8 8 H 1.09004 * 109.47103 * 300.00678 * 7 6 5 9 9 C 1.52997 * 109.47276 * 179.97438 * 7 6 5 10 10 N 1.46506 * 109.46766 * 65.00158 * 9 7 6 11 11 S 1.65599 * 119.99653 * 163.84310 * 10 9 7 12 12 O 1.42103 * 106.40172 * 177.35402 * 11 10 9 13 13 O 1.42106 * 106.40071 * 310.27077 * 11 10 9 14 14 C 1.76198 * 107.22138 * 63.81303 * 11 10 9 15 15 C 1.33387 * 122.54025 * 67.62744 * 14 11 10 16 16 C 1.50710 * 125.20105 * 359.97438 * 15 14 11 17 17 O 1.42894 * 109.47047 * 318.00529 * 16 15 14 18 18 Si 1.86303 * 109.46892 * 198.00620 * 16 15 14 19 19 S 1.75882 * 109.59468 * 180.02562 * 15 14 11 20 20 C 1.75876 * 90.96966 * 359.97438 * 19 15 14 21 21 C 1.33384 * 109.59787 * 359.73386 * 20 19 15 22 22 C 1.53005 * 109.46709 * 60.00120 * 7 6 5 23 23 C 1.52997 * 109.47154 * 299.99955 * 22 7 6 24 24 H 1.09000 * 109.46527 * 299.99969 * 5 3 2 25 25 H 1.09004 * 109.46882 * 59.99302 * 5 3 2 26 26 H 1.09002 * 109.46555 * 179.97438 * 6 5 3 27 27 H 1.09001 * 109.47106 * 59.99964 * 6 5 3 28 28 H 1.08997 * 109.47016 * 185.00463 * 9 7 6 29 29 H 1.09003 * 109.46837 * 305.00278 * 9 7 6 30 30 H 0.96997 * 120.00061 * 343.83929 * 10 9 7 31 31 H 1.09001 * 109.46846 * 78.00836 * 16 15 14 32 32 H 0.96705 * 114.00166 * 179.97438 * 17 16 15 33 33 H 1.48500 * 110.00230 * 59.99950 * 18 16 15 34 34 H 1.48501 * 109.99605 * 181.31933 * 18 16 15 35 35 H 1.08006 * 125.20181 * 180.02562 * 20 19 15 36 36 H 1.07998 * 122.54953 * 180.24017 * 21 20 19 37 37 H 1.09000 * 109.46527 * 179.97438 * 22 7 6 38 38 H 1.09001 * 109.47144 * 59.99968 * 22 7 6 39 39 H 1.09001 * 109.47106 * 300.00036 * 23 22 7 40 40 H 1.09006 * 109.47043 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 1 2.9712 0.1785 1.0121 5 6 3.1186 -1.3543 -0.4944 6 6 4.6486 -1.3533 -0.4950 7 6 5.1576 -0.2474 -1.4218 8 1 4.7939 -0.4255 -2.4338 9 6 6.6876 -0.2461 -1.4219 10 7 7.1769 -1.4973 -2.0062 11 16 8.7517 -1.6183 -2.5039 12 8 8.9275 -2.9533 -2.9582 13 8 9.0039 -0.4809 -3.3177 14 6 9.7658 -1.4418 -1.0739 15 6 9.7972 -2.3524 -0.0997 16 6 8.9949 -3.6280 -0.0767 17 8 7.6661 -3.3632 -0.5307 18 14 8.9359 -4.2931 1.6626 19 16 10.9169 -1.8360 1.1545 20 6 11.2910 -0.3696 0.2585 21 6 10.5950 -0.3506 -0.8792 22 6 4.6469 1.1075 -0.9274 23 6 3.1169 1.1065 -0.9268 24 1 2.7556 -2.1421 0.1656 25 1 2.7553 -1.5321 -1.5066 26 1 5.0123 -2.3187 -0.8468 27 1 5.0122 -1.1752 0.5170 28 1 7.0501 0.5963 -2.0109 29 1 7.0508 -0.1566 -0.3981 30 1 6.5785 -2.2547 -2.1015 31 1 9.4628 -4.3633 -0.7312 32 1 7.0921 -4.1413 -0.5425 33 1 8.3001 -3.2998 2.5650 34 1 8.1745 -5.5677 1.6932 35 1 11.9825 0.3960 0.5782 36 1 10.6694 0.4570 -1.5924 37 1 5.0099 1.8953 -1.5874 38 1 5.0105 1.2855 0.0847 39 1 2.7533 0.9285 -1.9388 40 1 2.7531 2.0720 -0.5750 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16496582_14772022.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:44:21 Heat of formation + Delta-G solvation = -47.292861 kcal Electronic energy + Delta-G solvation = -26568.797428 eV Core-core repulsion = 22796.760715 eV Total energy + Delta-G solvation = -3772.036713 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.074 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.20273 -39.44876 -38.34157 -37.69369 -37.36238 -36.85302 -35.79099 -32.10079 -31.87550 -31.59419 -27.38834 -26.81338 -24.19348 -23.63266 -22.93746 -21.69209 -20.77874 -19.88154 -18.93663 -18.68696 -18.55611 -18.12436 -17.75268 -16.93591 -16.31241 -16.15100 -15.86073 -15.27258 -15.20404 -14.98003 -14.90937 -14.73129 -14.38008 -14.26950 -14.23561 -13.94943 -13.65221 -13.56121 -13.42800 -13.18842 -13.08631 -13.07681 -12.84943 -12.74795 -12.60993 -12.57510 -12.15924 -11.96211 -11.93887 -11.63067 -11.45367 -11.14708 -10.94961 -10.81745 -10.20452 -9.99445 -9.62550 -5.03990 -0.55756 -0.36965 0.41054 0.72121 1.13263 1.22698 1.60640 1.73821 1.76598 1.89004 2.22903 2.79398 2.93149 3.17524 3.51763 3.60508 3.78652 3.81537 3.90040 4.12874 4.20930 4.28362 4.35318 4.39909 4.48291 4.50493 4.57745 4.62874 4.63766 4.79751 4.83575 4.98411 5.00888 5.07093 5.13562 5.20042 5.21449 5.26229 5.33290 5.35168 5.51787 5.65527 6.36887 6.51528 6.56407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C 0.235 3.765 3 C 0.010 3.990 4 H 0.138 0.862 5 C -0.110 4.110 6 C -0.107 4.107 7 C -0.092 4.092 8 H 0.081 0.919 9 C 0.121 3.879 10 N -1.080 6.080 11 S 2.729 3.271 12 O -0.984 6.984 13 O -1.001 7.001 14 C -0.680 4.680 15 C -0.062 4.062 16 C -0.074 4.074 17 O -0.538 6.538 18 Si 0.733 3.267 19 S 0.188 5.812 20 C -0.214 4.214 21 C -0.098 4.098 22 C -0.109 4.109 23 C -0.108 4.108 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.427 0.573 31 H 0.115 0.885 32 H 0.408 0.592 33 H -0.268 1.268 34 H -0.253 1.253 35 H 0.197 0.803 36 H 0.155 0.845 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.206 -1.456 5.959 8.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.183 5.183 2 C -0.082 4.082 3 C -0.011 4.011 4 H 0.155 0.845 5 C -0.148 4.148 6 C -0.145 4.145 7 C -0.112 4.112 8 H 0.099 0.901 9 C -0.005 4.005 10 N -0.845 5.845 11 S 2.818 3.182 12 O -0.974 6.974 13 O -0.991 6.991 14 C -0.781 4.781 15 C -0.183 4.183 16 C -0.185 4.185 17 O -0.351 6.351 18 Si 0.631 3.369 19 S 0.451 5.549 20 C -0.349 4.349 21 C -0.126 4.126 22 C -0.148 4.148 23 C -0.147 4.147 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.101 0.899 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.267 0.733 31 H 0.132 0.868 32 H 0.262 0.738 33 H -0.193 1.193 34 H -0.177 1.177 35 H 0.214 0.786 36 H 0.172 0.828 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.132 -1.653 7.146 8.418 hybrid contribution -1.206 0.304 -1.491 1.942 sum 2.926 -1.350 5.654 6.508 Atomic orbital electron populations 1.81297 1.15354 1.10603 1.11016 1.30015 0.95795 0.91225 0.91116 1.19281 0.78404 0.98968 1.04470 0.84473 1.21573 0.96899 0.94140 1.02227 1.21572 0.92988 0.99257 1.00683 1.21379 0.92581 0.96273 1.00949 0.90093 1.21420 0.95837 0.84616 0.98635 1.54986 1.27136 1.22369 1.80032 1.00514 0.72967 0.71969 0.72768 1.93514 1.85935 1.37843 1.80154 1.93534 1.85588 1.54002 1.66017 1.29722 1.21020 1.04462 1.22874 1.24099 0.99730 0.97903 0.96595 1.24666 0.85155 0.95247 1.13399 1.86416 1.20859 1.40553 1.87266 0.94145 0.91411 0.78882 0.72421 1.84099 1.36538 1.14760 1.19497 1.26224 1.07190 1.02529 0.98980 1.19857 0.96081 0.97865 0.98758 1.21524 0.93510 0.96474 1.03262 1.21536 0.96579 0.97352 0.99239 0.90648 0.91352 0.89907 0.90296 0.91122 0.90916 0.73336 0.86768 0.73801 1.19300 1.17749 0.78635 0.82764 0.90551 0.89736 0.91412 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -5.22 18.54 20.01 0.37 -4.85 16 2 C 0.24 0.40 14.65 89.44 1.31 1.71 16 3 C 0.01 -0.08 2.57 -12.60 -0.03 -0.11 16 4 H 0.14 -1.62 8.14 -2.39 -0.02 -1.64 16 5 C -0.11 1.00 5.16 30.59 0.16 1.16 16 6 C -0.11 1.19 5.07 30.59 0.16 1.34 16 7 C -0.09 0.84 2.30 -10.79 -0.02 0.82 16 8 H 0.08 -0.66 8.14 -2.38 -0.02 -0.67 16 9 C 0.12 -0.73 5.61 86.38 0.48 -0.24 16 10 N -1.08 3.89 4.08 -187.48 -0.76 3.13 16 11 S 2.73 11.53 4.91 -56.49 -0.28 11.25 16 12 O -0.98 -8.56 16.53 -121.81 -2.01 -10.57 16 13 O -1.00 -10.94 16.84 -128.00 -2.16 -13.10 16 14 C -0.68 -1.29 5.75 21.22 0.12 -1.17 16 15 C -0.06 0.08 5.77 24.59 0.14 0.22 16 16 C -0.07 0.38 2.13 71.24 0.15 0.53 16 17 O -0.54 4.18 7.89 -135.75 -1.07 3.11 16 18 Si 0.73 -5.20 31.13 68.60 2.14 -3.06 16 19 S 0.19 -0.79 20.79 -56.49 -1.17 -1.96 16 20 C -0.21 0.62 11.23 66.72 0.75 1.36 16 21 C -0.10 -0.10 9.70 21.22 0.21 0.11 16 22 C -0.11 1.10 5.20 30.59 0.16 1.26 16 23 C -0.11 0.90 5.16 30.59 0.16 1.06 16 24 H 0.07 -0.67 8.14 -2.39 -0.02 -0.69 16 25 H 0.07 -0.52 8.14 -2.38 -0.02 -0.54 16 26 H 0.08 -1.02 6.88 -2.39 -0.02 -1.04 16 27 H 0.08 -0.93 8.14 -2.39 -0.02 -0.95 16 28 H 0.07 -0.28 7.76 -2.39 -0.02 -0.30 16 29 H 0.07 -0.54 8.14 -2.39 -0.02 -0.56 16 30 H 0.43 -3.17 6.27 -96.75 -0.61 -3.77 16 31 H 0.11 -0.66 7.92 -2.39 -0.02 -0.67 16 32 H 0.41 -6.35 8.74 -74.05 -0.65 -7.00 16 33 H -0.27 0.51 7.11 99.48 0.71 1.21 16 34 H -0.25 1.06 7.11 99.48 0.71 1.77 16 35 H 0.20 -1.57 8.06 -2.91 -0.02 -1.60 16 36 H 0.15 0.11 7.74 -2.91 -0.02 0.09 16 37 H 0.08 -0.71 8.14 -2.39 -0.02 -0.73 16 38 H 0.08 -1.01 8.14 -2.39 -0.02 -1.03 16 39 H 0.07 -0.45 8.14 -2.39 -0.02 -0.47 16 40 H 0.08 -0.61 8.14 -2.38 -0.02 -0.63 16 Total: 0.00 -25.89 350.01 -1.35 -27.24 By element: Atomic # 1 Polarization: -19.09 SS G_CDS: -0.13 Total: -19.23 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: 3.74 Total: 8.05 kcal Atomic # 7 Polarization: -1.33 SS G_CDS: -0.39 Total: -1.72 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -5.24 Total: -20.56 kcal Atomic # 14 Polarization: -5.20 SS G_CDS: 2.14 Total: -3.06 kcal Atomic # 16 Polarization: 10.74 SS G_CDS: -1.45 Total: 9.29 kcal Total: -25.89 -1.35 -27.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16496582_14772022.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.051 kcal (2) G-P(sol) polarization free energy of solvation -25.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds