Wall clock time and date at job start Mon Mar 8 2021 10:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47221 * 32.72118 * 3 2 1 5 5 C 1.52994 * 109.46942 * 152.72354 * 3 2 1 6 6 C 1.53002 * 109.47220 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.46873 * 300.00379 * 6 5 3 8 8 H 1.09000 * 109.46680 * 299.99546 * 7 6 5 9 9 C 1.53002 * 109.46873 * 179.97438 * 7 6 5 10 10 N 1.46499 * 109.47062 * 174.99542 * 9 7 6 11 11 S 1.65595 * 120.00204 * 164.99648 * 10 9 7 12 12 O 1.42096 * 106.40348 * 311.46313 * 11 10 9 13 13 O 1.42100 * 106.40576 * 178.53952 * 11 10 9 14 14 C 1.76207 * 107.21629 * 65.00197 * 11 10 9 15 15 C 1.33390 * 122.53559 * 270.02310 * 14 11 10 16 16 S 1.75889 * 109.58988 * 179.73711 * 15 14 11 17 17 C 1.75890 * 90.96817 * 0.31277 * 16 15 14 18 18 C 1.50702 * 125.19755 * 179.97438 * 17 16 15 19 19 O 1.42898 * 109.46783 * 244.69431 * 18 17 16 20 20 Si 1.86300 * 109.47301 * 4.69363 * 18 17 16 21 21 C 1.33390 * 109.59362 * 359.68634 * 17 16 15 22 22 C 1.52992 * 109.47313 * 59.99465 * 7 6 5 23 23 C 1.52998 * 109.46757 * 272.72489 * 3 2 1 24 24 H 1.09000 * 109.47356 * 59.99846 * 5 3 2 25 25 H 1.09005 * 109.47446 * 299.99731 * 5 3 2 26 26 H 1.08995 * 109.47244 * 179.97438 * 6 5 3 27 27 H 1.09008 * 109.46824 * 59.99723 * 6 5 3 28 28 H 1.08997 * 109.47223 * 54.99640 * 9 7 6 29 29 H 1.08995 * 109.46926 * 294.99631 * 9 7 6 30 30 H 0.96999 * 119.99812 * 345.00016 * 10 9 7 31 31 H 1.07998 * 125.20283 * 359.94544 * 15 14 11 32 32 H 1.09004 * 109.46818 * 124.69995 * 18 17 16 33 33 H 0.96700 * 113.99995 * 180.02562 * 19 18 17 34 34 H 1.48498 * 109.99998 * 300.00196 * 20 18 17 35 35 H 1.48498 * 109.99919 * 61.32007 * 20 18 17 36 36 H 1.07998 * 122.53347 * 180.21850 * 21 17 16 37 37 H 1.09000 * 109.47182 * 60.00388 * 22 7 6 38 38 H 1.09000 * 109.46872 * 180.02562 * 22 7 6 39 39 H 1.09000 * 109.46952 * 299.99793 * 23 3 2 40 40 H 1.08995 * 109.47577 * 60.00136 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 1 2.9718 -0.8638 -0.5555 5 6 3.1174 1.2829 -0.6611 6 6 4.6475 1.2834 -0.6617 7 6 5.1580 1.2147 0.7790 8 1 4.7946 2.0791 1.3348 9 6 6.6880 1.2145 0.7784 10 7 7.1769 1.2693 2.1583 11 16 8.7590 0.9109 2.4911 12 8 9.0430 -0.3102 1.8222 13 8 8.9243 1.0866 3.8915 14 6 9.7479 2.1453 1.7146 15 6 10.2037 2.0197 0.4673 16 16 11.1409 3.4441 0.0356 17 6 10.8604 4.1466 1.6235 18 6 11.3819 5.4825 2.0867 19 8 12.3036 5.2873 3.1612 20 14 12.2466 6.3354 0.6741 21 6 10.1103 3.3190 2.3526 22 6 4.6486 -0.0675 1.4401 23 6 3.1180 -0.0677 1.4409 24 1 2.7537 2.1474 -0.1056 25 1 2.7541 1.3316 -1.6876 26 1 5.0103 2.1967 -1.1330 27 1 5.0108 0.4189 -1.2175 28 1 7.0512 2.0833 0.2295 29 1 7.0510 0.3048 0.3002 30 1 6.5739 1.5156 2.8771 31 1 10.0219 1.1743 -0.1797 32 1 10.5502 6.0984 2.4289 33 1 12.6798 6.1068 3.5104 34 1 13.3826 5.5057 0.1986 35 1 11.2909 6.5727 -0.4374 36 1 9.8090 3.5473 3.3643 37 1 5.0119 -0.9319 0.8843 38 1 5.0119 -0.1162 2.4666 39 1 2.7543 0.7967 1.9964 40 1 2.7551 -0.9812 1.9118 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16496582_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:44:26 Heat of formation + Delta-G solvation = -53.933742 kcal Electronic energy + Delta-G solvation = -25196.488232 eV Core-core repulsion = 21424.163548 eV Total energy + Delta-G solvation = -3772.324683 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.074 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.51175 -39.45690 -38.27482 -37.66197 -37.60605 -36.87100 -36.06526 -32.43378 -32.05770 -31.95262 -27.30905 -27.09968 -24.90510 -23.97037 -23.28573 -21.42288 -21.13972 -20.14976 -19.04586 -18.83274 -18.56808 -18.51064 -17.82024 -17.26146 -16.55989 -16.29682 -15.90845 -15.68589 -15.53370 -15.43896 -14.89150 -14.56967 -14.54160 -14.36904 -14.27866 -14.19982 -14.10637 -13.79105 -13.48146 -13.44828 -13.14648 -13.05315 -13.02529 -12.92086 -12.76912 -12.62271 -12.34379 -12.25595 -12.23402 -11.84861 -11.79374 -11.53874 -11.32444 -10.70020 -10.60704 -10.23223 -9.91318 -5.39084 -0.78410 -0.54010 0.27946 0.53781 0.92240 1.06196 1.42523 1.73587 1.77842 1.80941 2.00488 2.68360 2.81221 3.11832 3.32298 3.42088 3.46774 3.49962 3.63372 3.76767 3.80771 3.92009 4.02727 4.10529 4.13548 4.21731 4.22714 4.25201 4.26994 4.39571 4.55703 4.58408 4.65810 4.75505 4.84077 4.84474 4.89478 4.93286 4.97085 5.01816 5.09690 5.24057 5.79136 6.42793 6.58868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.206 3.794 3 C 0.007 3.993 4 H 0.116 0.884 5 C -0.111 4.111 6 C -0.113 4.113 7 C -0.096 4.096 8 H 0.084 0.916 9 C 0.117 3.883 10 N -1.114 6.114 11 S 2.711 3.289 12 O -0.951 6.951 13 O -0.950 6.950 14 C -0.685 4.685 15 C -0.084 4.084 16 S 0.138 5.862 17 C -0.183 4.183 18 C -0.036 4.036 19 O -0.541 6.541 20 Si 0.672 3.328 21 C -0.038 4.038 22 C -0.117 4.117 23 C -0.113 4.113 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.421 0.579 31 H 0.187 0.813 32 H 0.087 0.913 33 H 0.386 0.614 34 H -0.235 1.235 35 H -0.239 1.239 36 H 0.159 0.841 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.615 6.082 -2.511 7.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.108 5.108 2 C -0.113 4.113 3 C -0.015 4.015 4 H 0.134 0.866 5 C -0.150 4.150 6 C -0.151 4.151 7 C -0.116 4.116 8 H 0.103 0.897 9 C -0.009 4.009 10 N -0.875 5.875 11 S 2.797 3.203 12 O -0.941 6.941 13 O -0.940 6.940 14 C -0.784 4.784 15 C -0.222 4.222 16 S 0.402 5.598 17 C -0.300 4.300 18 C -0.149 4.149 19 O -0.348 6.348 20 Si 0.571 3.429 21 C -0.067 4.067 22 C -0.155 4.155 23 C -0.152 4.152 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.257 0.743 31 H 0.204 0.796 32 H 0.104 0.896 33 H 0.234 0.766 34 H -0.158 1.158 35 H -0.163 1.163 36 H 0.176 0.824 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.220 5.150 -4.463 7.167 hybrid contribution -0.754 0.009 1.314 1.515 sum 1.466 5.159 -3.149 6.219 Atomic orbital electron populations 1.81288 1.13030 1.08311 1.08165 1.29246 0.95148 0.93416 0.93449 1.18983 0.81200 1.01663 0.99605 0.86635 1.21551 0.95938 0.96009 1.01463 1.21545 0.94490 1.03411 0.95678 1.21430 0.93199 0.99555 0.97446 0.89743 1.21445 0.95620 1.02514 0.81353 1.55527 1.28451 1.87854 1.15682 1.01604 0.72179 0.73383 0.73181 1.93608 1.83918 1.40101 1.76458 1.93622 1.85014 1.86390 1.28950 1.30082 1.23245 1.18518 1.06557 1.25943 0.97389 1.01207 0.97701 1.84492 1.49979 1.11432 1.13937 1.23701 1.07005 1.01444 0.97852 1.23998 0.96804 0.94860 0.99239 1.86532 1.61023 1.36115 1.51176 0.94695 0.82725 0.88004 0.77489 1.19601 0.96213 0.90298 1.00589 1.21646 0.94112 0.97731 1.01971 1.21594 0.96181 1.03647 0.93732 0.90778 0.90572 0.90655 0.90673 0.91459 0.89715 0.74345 0.79557 0.89554 0.76558 1.15801 1.16287 0.82377 0.90652 0.90704 0.90805 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -1.86 18.54 42.16 0.78 -1.08 16 2 C 0.21 0.09 14.65 -20.76 -0.30 -0.21 16 3 C 0.01 -0.03 2.56 -93.41 -0.24 -0.27 16 4 H 0.12 -0.61 8.14 -51.93 -0.42 -1.03 16 5 C -0.11 0.51 5.16 -26.73 -0.14 0.37 16 6 C -0.11 0.64 5.20 -26.73 -0.14 0.50 16 7 C -0.10 0.51 2.21 -90.62 -0.20 0.31 16 8 H 0.08 -0.47 8.14 -51.93 -0.42 -0.89 16 9 C 0.12 -0.52 5.61 -4.04 -0.02 -0.54 16 10 N -1.11 3.49 5.53 -10.62 -0.06 3.44 16 11 S 2.71 1.61 5.80 -107.50 -0.62 0.99 16 12 O -0.95 -2.93 17.11 -57.17 -0.98 -3.91 16 13 O -0.95 -3.73 17.63 -57.17 -1.01 -4.73 16 14 C -0.68 -0.43 5.86 -41.21 -0.24 -0.67 16 15 C -0.08 0.02 10.70 29.04 0.31 0.33 16 16 S 0.14 0.09 20.59 -107.50 -2.21 -2.13 16 17 C -0.18 -0.23 5.73 -36.00 -0.21 -0.43 16 18 C -0.04 0.04 2.95 36.01 0.11 0.14 16 19 O -0.54 0.24 12.86 -35.23 -0.45 -0.21 16 20 Si 0.67 -1.41 30.98 -169.99 -5.27 -6.68 16 21 C -0.04 -0.05 9.59 -41.21 -0.40 -0.45 16 22 C -0.12 0.54 5.09 -26.71 -0.14 0.41 16 23 C -0.11 0.47 5.16 -26.70 -0.14 0.33 16 24 H 0.07 -0.31 8.14 -51.93 -0.42 -0.73 16 25 H 0.08 -0.34 8.14 -51.93 -0.42 -0.76 16 26 H 0.07 -0.44 8.14 -51.93 -0.42 -0.87 16 27 H 0.07 -0.45 8.14 -51.92 -0.42 -0.88 16 28 H 0.07 -0.37 8.14 -51.93 -0.42 -0.79 16 29 H 0.08 -0.37 7.75 -51.93 -0.40 -0.77 16 30 H 0.42 -1.98 8.37 -34.47 -0.29 -2.26 16 31 H 0.19 -0.51 8.00 -52.49 -0.42 -0.93 16 32 H 0.09 -0.28 7.96 -51.93 -0.41 -0.69 16 33 H 0.39 -2.20 8.74 45.56 0.40 -1.80 16 34 H -0.23 -0.24 7.11 56.52 0.40 0.17 16 35 H -0.24 0.05 7.11 56.52 0.40 0.45 16 36 H 0.16 0.11 7.96 -52.49 -0.42 -0.30 16 37 H 0.07 -0.35 8.14 -51.93 -0.42 -0.77 16 38 H 0.07 -0.33 7.54 -51.93 -0.39 -0.72 16 39 H 0.07 -0.29 8.14 -51.93 -0.42 -0.71 16 40 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 LS Contribution 361.49 15.07 5.45 5.45 Total: 0.00 -12.58 361.49 -11.48 -24.06 By element: Atomic # 1 Polarization: -9.64 SS G_CDS: -5.36 Total: -15.01 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -1.74 Total: -0.19 kcal Atomic # 7 Polarization: 1.63 SS G_CDS: 0.72 Total: 2.35 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -2.44 Total: -8.85 kcal Atomic # 14 Polarization: -1.41 SS G_CDS: -5.27 Total: -6.68 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.84 Total: -1.14 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -12.58 -11.48 -24.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16496582_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.876 kcal (2) G-P(sol) polarization free energy of solvation -12.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds