Wall clock time and date at job start Mon Mar 8 2021 10:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47221 * 32.72118 * 3 2 1 5 5 C 1.52994 * 109.46942 * 152.72354 * 3 2 1 6 6 C 1.53002 * 109.47220 * 180.02562 * 5 3 2 7 7 C 1.53003 * 109.46873 * 300.00379 * 6 5 3 8 8 H 1.09000 * 109.46680 * 299.99546 * 7 6 5 9 9 C 1.53002 * 109.46873 * 179.97438 * 7 6 5 10 10 N 1.46499 * 109.47062 * 174.99542 * 9 7 6 11 11 S 1.65595 * 120.00204 * 164.99648 * 10 9 7 12 12 O 1.42096 * 106.40348 * 311.46313 * 11 10 9 13 13 O 1.42100 * 106.40576 * 178.53952 * 11 10 9 14 14 C 1.76207 * 107.21629 * 65.00197 * 11 10 9 15 15 C 1.33390 * 122.53559 * 270.02310 * 14 11 10 16 16 S 1.75889 * 109.58988 * 179.73711 * 15 14 11 17 17 C 1.75890 * 90.96817 * 0.31277 * 16 15 14 18 18 C 1.50702 * 125.19755 * 179.97438 * 17 16 15 19 19 O 1.42898 * 109.46783 * 244.69431 * 18 17 16 20 20 Si 1.86300 * 109.47301 * 4.69363 * 18 17 16 21 21 C 1.33390 * 109.59362 * 359.68634 * 17 16 15 22 22 C 1.52992 * 109.47313 * 59.99465 * 7 6 5 23 23 C 1.52998 * 109.46757 * 272.72489 * 3 2 1 24 24 H 1.09000 * 109.47356 * 59.99846 * 5 3 2 25 25 H 1.09005 * 109.47446 * 299.99731 * 5 3 2 26 26 H 1.08995 * 109.47244 * 179.97438 * 6 5 3 27 27 H 1.09008 * 109.46824 * 59.99723 * 6 5 3 28 28 H 1.08997 * 109.47223 * 54.99640 * 9 7 6 29 29 H 1.08995 * 109.46926 * 294.99631 * 9 7 6 30 30 H 0.96999 * 119.99812 * 345.00016 * 10 9 7 31 31 H 1.07998 * 125.20283 * 359.94544 * 15 14 11 32 32 H 1.09004 * 109.46818 * 124.69995 * 18 17 16 33 33 H 0.96700 * 113.99995 * 180.02562 * 19 18 17 34 34 H 1.48498 * 109.99998 * 300.00196 * 20 18 17 35 35 H 1.48498 * 109.99919 * 61.32007 * 20 18 17 36 36 H 1.07998 * 122.53347 * 180.21850 * 21 17 16 37 37 H 1.09000 * 109.47182 * 60.00388 * 22 7 6 38 38 H 1.09000 * 109.46872 * 180.02562 * 22 7 6 39 39 H 1.09000 * 109.46952 * 299.99793 * 23 3 2 40 40 H 1.08995 * 109.47577 * 60.00136 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 1 2.9718 -0.8638 -0.5555 5 6 3.1174 1.2829 -0.6611 6 6 4.6475 1.2834 -0.6617 7 6 5.1580 1.2147 0.7790 8 1 4.7946 2.0791 1.3348 9 6 6.6880 1.2145 0.7784 10 7 7.1769 1.2693 2.1583 11 16 8.7590 0.9109 2.4911 12 8 9.0430 -0.3102 1.8222 13 8 8.9243 1.0866 3.8915 14 6 9.7479 2.1453 1.7146 15 6 10.2037 2.0197 0.4673 16 16 11.1409 3.4441 0.0356 17 6 10.8604 4.1466 1.6235 18 6 11.3819 5.4825 2.0867 19 8 12.3036 5.2873 3.1612 20 14 12.2466 6.3354 0.6741 21 6 10.1103 3.3190 2.3526 22 6 4.6486 -0.0675 1.4401 23 6 3.1180 -0.0677 1.4409 24 1 2.7537 2.1474 -0.1056 25 1 2.7541 1.3316 -1.6876 26 1 5.0103 2.1967 -1.1330 27 1 5.0108 0.4189 -1.2175 28 1 7.0512 2.0833 0.2295 29 1 7.0510 0.3048 0.3002 30 1 6.5739 1.5156 2.8771 31 1 10.0219 1.1743 -0.1797 32 1 10.5502 6.0984 2.4289 33 1 12.6798 6.1068 3.5104 34 1 13.3826 5.5057 0.1986 35 1 11.2909 6.5727 -0.4374 36 1 9.8090 3.5473 3.3643 37 1 5.0119 -0.9319 0.8843 38 1 5.0119 -0.1162 2.4666 39 1 2.7543 0.7967 1.9964 40 1 2.7551 -0.9812 1.9118 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16496582_15065232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:44:25 Heat of formation + Delta-G solvation = -58.507468 kcal Electronic energy + Delta-G solvation = -25196.686563 eV Core-core repulsion = 21424.163548 eV Total energy + Delta-G solvation = -3772.523015 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 343.074 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.19612 -39.43613 -38.41633 -37.64423 -37.53282 -37.02791 -35.92630 -32.16222 -32.01828 -31.60917 -27.24784 -26.84267 -24.88870 -23.60033 -22.99707 -21.31144 -20.89223 -20.08622 -19.00512 -18.67607 -18.52155 -18.43945 -17.85278 -17.14017 -16.32745 -16.16917 -15.82843 -15.53680 -15.31574 -15.24600 -14.76033 -14.53627 -14.37467 -14.29058 -14.22015 -14.18712 -14.06987 -13.69990 -13.45482 -13.31800 -13.20949 -13.08176 -12.92654 -12.88240 -12.63973 -12.59170 -12.22021 -11.96549 -11.95206 -11.85915 -11.43852 -11.18876 -10.97623 -10.54251 -10.41583 -10.20304 -9.93666 -5.23469 -0.79334 -0.55238 0.27580 0.53745 0.91777 1.17331 1.54807 1.75575 1.78283 1.85392 2.07464 2.66918 2.94696 3.18130 3.42657 3.73189 3.77862 3.81502 3.84086 3.87741 4.13614 4.15466 4.25865 4.37916 4.39875 4.51454 4.53601 4.58861 4.61620 4.64187 4.80282 4.82673 4.93869 5.00094 5.03996 5.10622 5.21917 5.25760 5.34309 5.35762 5.49624 5.65215 6.09124 6.58233 6.82138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C 0.235 3.765 3 C 0.009 3.991 4 H 0.138 0.862 5 C -0.108 4.108 6 C -0.109 4.109 7 C -0.091 4.091 8 H 0.090 0.910 9 C 0.108 3.892 10 N -1.100 6.100 11 S 2.730 3.270 12 O -0.977 6.977 13 O -0.987 6.987 14 C -0.690 4.690 15 C -0.076 4.076 16 S 0.121 5.879 17 C -0.199 4.199 18 C -0.047 4.047 19 O -0.564 6.564 20 Si 0.755 3.245 21 C -0.052 4.052 22 C -0.118 4.118 23 C -0.110 4.110 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.429 0.571 31 H 0.210 0.790 32 H 0.111 0.889 33 H 0.407 0.593 34 H -0.281 1.281 35 H -0.263 1.263 36 H 0.159 0.841 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.041 6.712 -3.019 7.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.184 5.184 2 C -0.081 4.081 3 C -0.012 4.012 4 H 0.155 0.845 5 C -0.147 4.147 6 C -0.147 4.147 7 C -0.112 4.112 8 H 0.108 0.892 9 C -0.017 4.017 10 N -0.865 5.865 11 S 2.817 3.183 12 O -0.967 6.967 13 O -0.978 6.978 14 C -0.790 4.790 15 C -0.215 4.215 16 S 0.384 5.616 17 C -0.316 4.316 18 C -0.159 4.159 19 O -0.375 6.375 20 Si 0.658 3.342 21 C -0.080 4.080 22 C -0.155 4.155 23 C -0.148 4.148 24 H 0.088 0.912 25 H 0.095 0.905 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.101 0.899 29 H 0.106 0.894 30 H 0.267 0.733 31 H 0.227 0.773 32 H 0.128 0.872 33 H 0.259 0.741 34 H -0.207 1.207 35 H -0.189 1.189 36 H 0.177 0.823 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.639 5.798 -4.932 8.057 hybrid contribution -0.846 -0.191 1.441 1.681 sum 1.794 5.608 -3.492 6.845 Atomic orbital electron populations 1.81305 1.15390 1.10940 1.10736 1.30031 0.95807 0.91121 0.91172 1.19299 0.78383 1.03187 1.00373 0.84464 1.21543 0.96748 0.95133 1.01259 1.21530 0.93376 1.04371 0.95402 1.21403 0.92458 0.99420 0.97870 0.89194 1.21688 0.96159 1.03467 0.80401 1.55216 1.26865 1.87566 1.16820 1.00776 0.72716 0.72869 0.71987 1.93571 1.84756 1.41699 1.76689 1.93567 1.85945 1.86873 1.31375 1.30043 1.23788 1.18298 1.06853 1.26245 0.96250 1.01313 0.97663 1.84567 1.50498 1.12286 1.14266 1.24078 1.07028 1.02521 0.97942 1.24234 0.97811 0.94075 0.99762 1.86477 1.61346 1.38247 1.51393 0.93747 0.79024 0.86050 0.75396 1.19744 0.96687 0.90778 1.00832 1.21662 0.93424 0.98325 1.02103 1.21564 0.96659 1.03373 0.93253 0.91172 0.90506 0.89789 0.89697 0.89941 0.89448 0.73271 0.77267 0.87162 0.74118 1.20703 1.18872 0.82313 0.90225 0.90891 0.91063 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -5.05 18.54 20.01 0.37 -4.68 16 2 C 0.24 0.29 14.65 89.44 1.31 1.60 16 3 C 0.01 -0.08 2.56 -12.60 -0.03 -0.11 16 4 H 0.14 -1.69 8.14 -2.39 -0.02 -1.71 16 5 C -0.11 1.13 5.16 30.59 0.16 1.29 16 6 C -0.11 1.44 5.20 30.60 0.16 1.60 16 7 C -0.09 1.11 2.21 -10.79 -0.02 1.09 16 8 H 0.09 -1.15 8.14 -2.39 -0.02 -1.17 16 9 C 0.11 -1.13 5.61 86.38 0.48 -0.64 16 10 N -1.10 7.67 5.53 -187.50 -1.04 6.64 16 11 S 2.73 3.61 5.80 -56.49 -0.33 3.29 16 12 O -0.98 -6.01 17.11 -128.00 -2.19 -8.20 16 13 O -0.99 -8.57 17.63 -128.00 -2.26 -10.83 16 14 C -0.69 -0.86 5.86 21.21 0.12 -0.74 16 15 C -0.08 0.07 10.70 66.72 0.71 0.78 16 16 S 0.12 0.18 20.59 -56.49 -1.16 -0.99 16 17 C -0.20 -0.51 5.73 24.59 0.14 -0.37 16 18 C -0.05 0.12 2.95 71.24 0.21 0.33 16 19 O -0.56 0.68 12.86 -148.98 -1.92 -1.23 16 20 Si 0.76 -3.23 30.98 68.60 2.13 -1.10 16 21 C -0.05 -0.16 9.59 21.21 0.20 0.05 16 22 C -0.12 1.24 5.09 30.61 0.16 1.39 16 23 C -0.11 0.98 5.16 30.61 0.16 1.14 16 24 H 0.07 -0.65 8.14 -2.39 -0.02 -0.67 16 25 H 0.08 -0.77 8.14 -2.38 -0.02 -0.79 16 26 H 0.08 -1.19 8.14 -2.39 -0.02 -1.21 16 27 H 0.08 -1.24 8.14 -2.38 -0.02 -1.26 16 28 H 0.08 -1.07 8.14 -2.39 -0.02 -1.09 16 29 H 0.09 -0.91 7.75 -2.39 -0.02 -0.93 16 30 H 0.43 -4.30 8.37 -96.75 -0.81 -5.11 16 31 H 0.21 -1.37 8.00 -2.91 -0.02 -1.39 16 32 H 0.11 -0.84 7.96 -2.39 -0.02 -0.86 16 33 H 0.41 -4.94 8.74 -74.06 -0.65 -5.59 16 34 H -0.28 -0.91 7.11 99.48 0.71 -0.20 16 35 H -0.26 0.12 7.11 99.48 0.71 0.83 16 36 H 0.16 0.33 7.96 -2.91 -0.02 0.31 16 37 H 0.08 -0.87 8.14 -2.39 -0.02 -0.89 16 38 H 0.07 -0.71 7.54 -2.39 -0.02 -0.73 16 39 H 0.07 -0.58 8.14 -2.39 -0.02 -0.60 16 40 H 0.07 -0.55 8.14 -2.39 -0.02 -0.57 16 Total: 0.00 -30.35 361.49 -2.97 -33.32 By element: Atomic # 1 Polarization: -23.29 SS G_CDS: -0.34 Total: -23.63 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 3.76 Total: 7.42 kcal Atomic # 7 Polarization: 2.63 SS G_CDS: -0.67 Total: 1.96 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -6.36 Total: -20.26 kcal Atomic # 14 Polarization: -3.23 SS G_CDS: 2.13 Total: -1.10 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -1.49 Total: 2.30 kcal Total: -30.35 -2.97 -33.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16496582_15065232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.191 kcal (2) G-P(sol) polarization free energy of solvation -30.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds