Wall clock time and date at job start Mon Mar 8 2021 10:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33392 * 125.20435 * 2 1 4 4 C 1.50697 * 122.53856 * 359.97438 * 3 2 1 5 5 O 1.42897 * 109.47086 * 16.48108 * 4 3 2 6 6 Si 1.86298 * 109.46856 * 136.48109 * 4 3 2 7 7 C 1.38423 * 114.92026 * 179.97438 * 3 2 1 8 8 S 1.76201 * 122.53965 * 180.02562 * 7 3 2 9 9 O 1.42099 * 106.39990 * 197.65282 * 8 7 3 10 10 O 1.42096 * 106.40092 * 330.58280 * 8 7 3 11 11 N 1.65603 * 107.21351 * 84.11831 * 8 7 3 12 12 C 1.46498 * 120.00216 * 65.00369 * 11 8 7 13 13 C 1.53000 * 109.47319 * 164.99735 * 12 11 8 14 14 H 1.09001 * 109.47078 * 305.00029 * 13 12 11 15 15 C 1.52994 * 109.47187 * 64.99529 * 13 12 11 16 16 C 1.53000 * 109.47187 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.47153 * 300.00356 * 16 15 13 18 18 H 1.08999 * 109.47188 * 299.99270 * 17 16 15 19 19 C 1.47204 * 109.46717 * 179.97438 * 17 16 15 20 20 N 8.65635 * 123.91444 * 282.53895 * 6 1 2 21 21 C 1.53000 * 109.47262 * 60.00060 * 17 16 15 22 22 C 1.52999 * 109.47286 * 185.00255 * 13 12 11 23 23 C 1.33398 * 114.92114 * 359.97438 * 7 3 2 24 24 C 1.50694 * 125.20027 * 180.02562 * 23 7 3 25 25 S 1.75881 * 109.59427 * 0.02562 * 23 7 3 26 26 H 1.08994 * 109.47101 * 173.99524 * 1 2 3 27 27 H 1.09000 * 109.47301 * 293.99701 * 1 2 3 28 28 H 1.08998 * 109.46819 * 53.99492 * 1 2 3 29 29 H 1.08997 * 109.47100 * 256.47631 * 4 3 2 30 30 H 0.96698 * 114.00337 * 68.98398 * 5 4 3 31 31 H 1.48500 * 110.00169 * 180.02562 * 6 4 3 32 32 H 1.48502 * 109.99932 * 301.31639 * 6 4 3 33 33 H 0.96998 * 119.99683 * 244.99291 * 11 8 7 34 34 H 1.09004 * 109.47140 * 284.99402 * 12 11 8 35 35 H 1.09004 * 109.47060 * 44.99727 * 12 11 8 36 36 H 1.09003 * 109.47311 * 300.00215 * 15 13 12 37 37 H 1.09002 * 109.46894 * 60.00789 * 15 13 12 38 38 H 1.09007 * 109.47326 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.47078 * 60.00501 * 16 15 13 40 40 H 1.08995 * 109.46944 * 179.97438 * 21 17 16 41 41 H 1.09001 * 109.47005 * 59.99833 * 21 17 16 42 42 H 1.08998 * 109.46491 * 299.99560 * 22 13 12 43 43 H 1.08990 * 109.47581 * 59.99572 * 22 13 12 44 44 H 1.09004 * 109.47199 * 180.02562 * 24 23 7 45 45 H 1.09004 * 109.47393 * 299.99864 * 24 23 7 46 46 H 1.09000 * 109.47398 * 60.00208 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 1.7052 2.4846 -0.0006 5 8 0.3290 2.4362 0.3812 6 14 2.6484 3.5420 1.2090 7 6 3.6380 0.8428 0.0006 8 16 4.8357 2.1352 0.0013 9 8 6.0613 1.5465 -0.4116 10 8 4.2378 3.2367 -0.6683 11 7 5.0492 2.6045 1.5750 12 6 5.6225 1.6700 2.5468 13 6 6.0571 2.4373 3.7971 14 1 6.7374 3.2401 3.5126 15 6 4.8262 3.0316 4.4844 16 6 5.2608 3.7983 5.7351 17 6 5.9713 2.8440 6.6971 18 1 5.2908 2.0414 6.9813 19 6 6.3899 3.5820 7.9001 20 7 6.7113 4.1555 8.8279 21 6 7.2023 2.2498 6.0098 22 6 6.7680 1.4836 4.7594 23 6 3.9751 -0.4479 0.0016 24 6 5.3860 -0.9772 0.0029 25 16 2.5209 -1.4373 0.0011 26 1 -0.3633 -1.0220 -0.1075 27 1 -0.3634 0.4179 0.9388 28 1 -0.3633 0.6041 -0.8313 29 1 1.7904 2.9116 -0.9998 30 1 0.1858 2.1970 1.3070 31 1 2.0948 4.9200 1.2184 32 1 2.5666 2.9531 2.5698 33 1 4.7949 3.4982 1.8533 34 1 4.8748 0.9251 2.8193 35 1 6.4870 1.1730 2.1066 36 1 4.3198 3.7111 3.7989 37 1 4.1460 2.2288 4.7690 38 1 4.3838 4.2214 6.2251 39 1 5.9413 4.6011 5.4510 40 1 7.7086 1.5704 6.6954 41 1 7.8827 3.0526 5.7257 42 1 6.0877 0.6809 5.0439 43 1 7.6449 1.0602 4.2697 44 1 5.3652 -2.0670 0.0030 45 1 5.9073 -0.6242 -0.8870 46 1 5.9060 -0.6232 0.8930 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16496582_15065288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:44:30 Heat of formation + Delta-G solvation = -47.750443 kcal Electronic energy + Delta-G solvation = -31058.284168 eV Core-core repulsion = 26975.152374 eV Total energy + Delta-G solvation = -4083.131793 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.106 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.58962 -40.36097 -38.74335 -37.78740 -37.44024 -37.08751 -36.22743 -33.96504 -32.55091 -32.02414 -31.03270 -28.02764 -27.28699 -25.85914 -24.07145 -23.38787 -23.25133 -21.30585 -20.92155 -20.10480 -19.02947 -18.84053 -18.75596 -18.15212 -17.61541 -17.28049 -16.64071 -16.27499 -16.00292 -15.61122 -15.48291 -15.34293 -15.16025 -14.95760 -14.86123 -14.80223 -14.44916 -14.27627 -14.24344 -14.08357 -13.86393 -13.66562 -13.50445 -13.40791 -13.38048 -13.28594 -13.11098 -13.05614 -12.87464 -12.85170 -12.65914 -12.41043 -12.35741 -12.19425 -11.87048 -11.78171 -11.61480 -11.53116 -11.28839 -10.75476 -10.61626 -10.01322 -9.35889 -4.84828 -0.92625 -0.44512 0.37517 0.71030 0.79440 1.28897 1.49940 1.75205 1.78388 1.82585 1.97083 2.52080 2.78105 3.07772 3.19845 3.38783 3.41941 3.44058 3.47102 3.71428 3.76635 3.88427 3.97705 4.02727 4.09041 4.12000 4.14336 4.18092 4.23136 4.31044 4.35861 4.40041 4.53729 4.58043 4.59364 4.64271 4.69076 4.70286 4.81434 4.86872 4.90071 4.91898 4.92939 5.04391 5.05566 5.08201 5.20369 5.25919 5.50953 6.34642 6.57010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.174 4.174 3 C -0.070 4.070 4 C -0.056 4.056 5 O -0.526 6.526 6 Si 0.559 3.441 7 C -0.684 4.684 8 S 2.683 3.317 9 O -0.934 6.934 10 O -0.905 6.905 11 N -1.086 6.086 12 C 0.114 3.886 13 C -0.100 4.100 14 H 0.091 0.909 15 C -0.120 4.120 16 C -0.114 4.114 17 C 0.008 3.992 18 H 0.115 0.885 19 C 0.205 3.795 20 N -0.432 5.432 21 C -0.112 4.112 22 C -0.112 4.112 23 C -0.048 4.048 24 C -0.114 4.114 25 S 0.153 5.847 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.134 0.866 30 H 0.370 0.630 31 H -0.224 1.224 32 H -0.240 1.240 33 H 0.416 0.584 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.112 0.888 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.049 -5.263 0.054 5.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.292 4.292 3 C -0.080 4.080 4 C -0.168 4.168 5 O -0.331 6.331 6 Si 0.457 3.543 7 C -0.784 4.784 8 S 2.772 3.228 9 O -0.924 6.924 10 O -0.894 6.894 11 N -0.854 5.854 12 C -0.011 4.011 13 C -0.119 4.119 14 H 0.110 0.890 15 C -0.157 4.157 16 C -0.152 4.152 17 C -0.014 4.014 18 H 0.133 0.867 19 C -0.113 4.113 20 N -0.107 5.107 21 C -0.150 4.150 22 C -0.151 4.151 23 C -0.169 4.169 24 C -0.173 4.173 25 S 0.419 5.581 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.151 0.849 30 H 0.218 0.782 31 H -0.146 1.146 32 H -0.167 1.167 33 H 0.257 0.743 34 H 0.091 0.909 35 H 0.112 0.888 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.098 0.902 45 H 0.130 0.870 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.540 -5.150 0.778 5.431 hybrid contribution -1.741 0.749 0.412 1.939 sum -0.201 -4.401 1.190 4.563 Atomic orbital electron populations 1.20384 0.86722 1.01920 1.03984 1.24405 1.00542 0.94243 1.10013 1.18594 0.90209 0.97033 1.02213 1.24884 0.87056 0.95734 1.09097 1.86641 1.22742 1.92043 1.31723 0.95434 0.97477 0.83250 0.78089 1.29158 1.11451 1.13095 1.24707 1.02654 0.74013 0.73531 0.72622 1.93587 1.41341 1.77839 1.79609 1.93055 1.76714 1.51732 1.67886 1.55588 1.75985 1.24203 1.29578 1.21595 0.98740 0.91344 0.89390 1.21469 0.97794 0.98955 0.93724 0.89048 1.21716 0.97410 1.00344 0.96279 1.21587 1.00826 0.97756 0.95071 1.18972 0.98919 0.96750 0.86722 0.86744 1.29280 0.93651 0.93969 0.94443 1.81339 1.08553 1.09302 1.11500 1.21554 0.95809 1.00617 0.97063 1.21528 1.01053 0.97738 0.94732 1.24570 1.00760 0.94828 0.96758 1.20978 0.88170 1.02024 1.06080 1.84460 0.95341 1.08897 1.69367 0.92238 0.90495 0.89302 0.84856 0.78190 1.14650 1.16671 0.74338 0.90887 0.88818 0.91215 0.90756 0.90703 0.90524 0.90473 0.90584 0.90771 0.90203 0.90194 0.86971 0.88860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.05 8.52 36.01 0.31 0.35 16 2 C -0.17 -0.08 6.47 -36.00 -0.23 -0.31 16 3 C -0.07 -0.06 5.04 -106.25 -0.53 -0.59 16 4 C -0.06 -0.08 2.61 36.00 0.09 0.02 16 5 O -0.53 -0.55 9.81 -35.23 -0.35 -0.90 16 6 Si 0.56 0.19 20.59 -169.99 -3.50 -3.31 16 7 C -0.68 0.11 5.48 -41.21 -0.23 -0.11 16 8 S 2.68 -1.77 4.81 -107.50 -0.52 -2.28 16 9 O -0.93 -0.56 14.36 -57.17 -0.82 -1.39 16 10 O -0.90 -1.20 12.79 -57.17 -0.73 -1.93 16 11 N -1.09 3.78 3.83 -10.61 -0.04 3.73 16 12 C 0.11 -0.61 5.44 -4.04 -0.02 -0.64 16 13 C -0.10 0.59 2.30 -90.62 -0.21 0.38 16 14 H 0.09 -0.56 8.14 -51.93 -0.42 -0.98 16 15 C -0.12 0.61 5.08 -26.73 -0.14 0.48 16 16 C -0.11 0.51 5.16 -26.73 -0.14 0.38 16 17 C 0.01 -0.03 2.57 -93.40 -0.24 -0.27 16 18 H 0.11 -0.67 8.14 -51.93 -0.42 -1.09 16 19 C 0.20 0.01 14.65 -20.72 -0.30 -0.30 16 20 N -0.43 -1.71 18.55 42.20 0.78 -0.93 16 21 C -0.11 0.58 5.16 -26.76 -0.14 0.45 16 22 C -0.11 0.73 5.20 -26.76 -0.14 0.59 16 23 C -0.05 0.05 6.50 -36.00 -0.23 -0.19 16 24 C -0.11 0.32 8.68 36.00 0.31 0.64 16 25 S 0.15 -0.11 23.31 -107.50 -2.51 -2.62 16 26 H 0.06 -0.08 8.14 -51.93 -0.42 -0.51 16 27 H 0.08 -0.15 6.53 -51.93 -0.34 -0.49 16 28 H 0.09 0.03 7.53 -51.93 -0.39 -0.36 16 29 H 0.13 0.29 7.62 -51.93 -0.40 -0.11 16 30 H 0.37 -0.69 7.35 45.56 0.34 -0.36 16 31 H -0.22 -0.72 7.11 56.52 0.40 -0.31 16 32 H -0.24 0.18 6.77 56.52 0.38 0.56 16 33 H 0.42 -1.81 4.24 -34.47 -0.15 -1.96 16 34 H 0.07 -0.46 8.14 -51.93 -0.42 -0.89 16 35 H 0.09 -0.59 7.20 -51.93 -0.37 -0.96 16 36 H 0.07 -0.33 5.76 -51.93 -0.30 -0.63 16 37 H 0.07 -0.40 8.14 -51.93 -0.42 -0.82 16 38 H 0.07 -0.30 8.14 -51.92 -0.42 -0.72 16 39 H 0.08 -0.33 8.14 -51.93 -0.42 -0.76 16 40 H 0.08 -0.39 8.14 -51.93 -0.42 -0.81 16 41 H 0.08 -0.37 8.14 -51.93 -0.42 -0.79 16 42 H 0.07 -0.53 8.14 -51.93 -0.42 -0.95 16 43 H 0.08 -0.55 8.14 -51.93 -0.42 -0.97 16 44 H 0.08 -0.33 8.14 -51.93 -0.42 -0.76 16 45 H 0.11 -0.22 6.96 -51.93 -0.36 -0.58 16 46 H 0.09 -0.44 7.26 -51.93 -0.38 -0.82 16 LS Contribution 368.91 15.07 5.56 5.56 Total: 0.00 -8.68 368.91 -10.60 -19.27 By element: Atomic # 1 Polarization: -9.42 SS G_CDS: -6.64 Total: -16.06 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -1.84 Total: 0.86 kcal Atomic # 7 Polarization: 2.06 SS G_CDS: 0.74 Total: 2.80 kcal Atomic # 8 Polarization: -2.32 SS G_CDS: -1.90 Total: -4.22 kcal Atomic # 14 Polarization: 0.19 SS G_CDS: -3.50 Total: -3.31 kcal Atomic # 16 Polarization: -1.88 SS G_CDS: -3.02 Total: -4.91 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -8.68 -10.60 -19.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16496582_15065288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.478 kcal (2) G-P(sol) polarization free energy of solvation -8.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds