Wall clock time and date at job start Mon Mar 8 2021 10:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33392 * 125.20435 * 2 1 4 4 C 1.50697 * 122.53856 * 359.97438 * 3 2 1 5 5 O 1.42897 * 109.47086 * 16.48108 * 4 3 2 6 6 Si 1.86298 * 109.46856 * 136.48109 * 4 3 2 7 7 C 1.38423 * 114.92026 * 179.97438 * 3 2 1 8 8 S 1.76201 * 122.53965 * 180.02562 * 7 3 2 9 9 O 1.42099 * 106.39990 * 197.65282 * 8 7 3 10 10 O 1.42096 * 106.40092 * 330.58280 * 8 7 3 11 11 N 1.65603 * 107.21351 * 84.11831 * 8 7 3 12 12 C 1.46498 * 120.00216 * 65.00369 * 11 8 7 13 13 C 1.53000 * 109.47319 * 164.99735 * 12 11 8 14 14 H 1.09001 * 109.47078 * 305.00029 * 13 12 11 15 15 C 1.52994 * 109.47187 * 64.99529 * 13 12 11 16 16 C 1.53000 * 109.47187 * 179.97438 * 15 13 12 17 17 C 1.53000 * 109.47153 * 300.00356 * 16 15 13 18 18 H 1.08999 * 109.47188 * 299.99270 * 17 16 15 19 19 C 1.47204 * 109.46717 * 179.97438 * 17 16 15 20 20 N 8.65635 * 123.91444 * 282.53895 * 6 1 2 21 21 C 1.53000 * 109.47262 * 60.00060 * 17 16 15 22 22 C 1.52999 * 109.47286 * 185.00255 * 13 12 11 23 23 C 1.33398 * 114.92114 * 359.97438 * 7 3 2 24 24 C 1.50694 * 125.20027 * 180.02562 * 23 7 3 25 25 S 1.75881 * 109.59427 * 0.02562 * 23 7 3 26 26 H 1.08994 * 109.47101 * 173.99524 * 1 2 3 27 27 H 1.09000 * 109.47301 * 293.99701 * 1 2 3 28 28 H 1.08998 * 109.46819 * 53.99492 * 1 2 3 29 29 H 1.08997 * 109.47100 * 256.47631 * 4 3 2 30 30 H 0.96698 * 114.00337 * 68.98398 * 5 4 3 31 31 H 1.48500 * 110.00169 * 180.02562 * 6 4 3 32 32 H 1.48502 * 109.99932 * 301.31639 * 6 4 3 33 33 H 0.96998 * 119.99683 * 244.99291 * 11 8 7 34 34 H 1.09004 * 109.47140 * 284.99402 * 12 11 8 35 35 H 1.09004 * 109.47060 * 44.99727 * 12 11 8 36 36 H 1.09003 * 109.47311 * 300.00215 * 15 13 12 37 37 H 1.09002 * 109.46894 * 60.00789 * 15 13 12 38 38 H 1.09007 * 109.47326 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.47078 * 60.00501 * 16 15 13 40 40 H 1.08995 * 109.46944 * 179.97438 * 21 17 16 41 41 H 1.09001 * 109.47005 * 59.99833 * 21 17 16 42 42 H 1.08998 * 109.46491 * 299.99560 * 22 13 12 43 43 H 1.08990 * 109.47581 * 59.99572 * 22 13 12 44 44 H 1.09004 * 109.47199 * 180.02562 * 24 23 7 45 45 H 1.09004 * 109.47393 * 299.99864 * 24 23 7 46 46 H 1.09000 * 109.47398 * 60.00208 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 1.7052 2.4846 -0.0006 5 8 0.3290 2.4362 0.3812 6 14 2.6484 3.5420 1.2090 7 6 3.6380 0.8428 0.0006 8 16 4.8357 2.1352 0.0013 9 8 6.0613 1.5465 -0.4116 10 8 4.2378 3.2367 -0.6683 11 7 5.0492 2.6045 1.5750 12 6 5.6225 1.6700 2.5468 13 6 6.0571 2.4373 3.7971 14 1 6.7374 3.2401 3.5126 15 6 4.8262 3.0316 4.4844 16 6 5.2608 3.7983 5.7351 17 6 5.9713 2.8440 6.6971 18 1 5.2908 2.0414 6.9813 19 6 6.3899 3.5820 7.9001 20 7 6.7113 4.1555 8.8279 21 6 7.2023 2.2498 6.0098 22 6 6.7680 1.4836 4.7594 23 6 3.9751 -0.4479 0.0016 24 6 5.3860 -0.9772 0.0029 25 16 2.5209 -1.4373 0.0011 26 1 -0.3633 -1.0220 -0.1075 27 1 -0.3634 0.4179 0.9388 28 1 -0.3633 0.6041 -0.8313 29 1 1.7904 2.9116 -0.9998 30 1 0.1858 2.1970 1.3070 31 1 2.0948 4.9200 1.2184 32 1 2.5666 2.9531 2.5698 33 1 4.7949 3.4982 1.8533 34 1 4.8748 0.9251 2.8193 35 1 6.4870 1.1730 2.1066 36 1 4.3198 3.7111 3.7989 37 1 4.1460 2.2288 4.7690 38 1 4.3838 4.2214 6.2251 39 1 5.9413 4.6011 5.4510 40 1 7.7086 1.5704 6.6954 41 1 7.8827 3.0526 5.7257 42 1 6.0877 0.6809 5.0439 43 1 7.6449 1.0602 4.2697 44 1 5.3652 -2.0670 0.0030 45 1 5.9073 -0.6242 -0.8870 46 1 5.9060 -0.6232 0.8930 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16496582_15065288.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:44:28 Heat of formation + Delta-G solvation = -47.671137 kcal Electronic energy + Delta-G solvation = -31058.280729 eV Core-core repulsion = 26975.152374 eV Total energy + Delta-G solvation = -4083.128354 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 371.106 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -40.33501 -40.19721 -38.72271 -37.70950 -37.43890 -37.07267 -36.04514 -33.86649 -32.21146 -31.60107 -30.92971 -27.96815 -26.92552 -25.79568 -23.64364 -23.19909 -22.99331 -21.01822 -20.66104 -20.00500 -18.89142 -18.71876 -18.61311 -18.12411 -17.39804 -17.21697 -16.35490 -16.21848 -15.89363 -15.39330 -15.22779 -15.12598 -15.01882 -14.79404 -14.68780 -14.59778 -14.28047 -14.12527 -14.09142 -14.05028 -13.78772 -13.56451 -13.37056 -13.35379 -13.25311 -13.04789 -13.00163 -12.91806 -12.69496 -12.62560 -12.58863 -12.32462 -11.93393 -11.91490 -11.69210 -11.56430 -11.37700 -11.11579 -10.89919 -10.62377 -10.43216 -9.93130 -9.31444 -4.87045 -0.82970 -0.36314 0.46450 0.76988 0.79886 1.25337 1.45659 1.77167 1.79992 1.88691 2.01555 2.60990 2.97204 3.17118 3.23166 3.56034 3.79617 3.81654 3.84437 3.87726 4.11469 4.15067 4.26001 4.30235 4.37258 4.39960 4.50776 4.54623 4.59310 4.65147 4.67638 4.70920 4.73473 4.80741 4.87318 4.98017 5.05397 5.07706 5.13248 5.13711 5.23481 5.27203 5.31357 5.32507 5.37922 5.38836 5.53829 5.70245 5.84154 6.43529 6.60665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.191 4.191 3 C -0.079 4.079 4 C -0.068 4.068 5 O -0.538 6.538 6 Si 0.591 3.409 7 C -0.694 4.694 8 S 2.695 3.305 9 O -0.946 6.946 10 O -0.932 6.932 11 N -1.076 6.076 12 C 0.102 3.898 13 C -0.097 4.097 14 H 0.093 0.907 15 C -0.122 4.122 16 C -0.112 4.112 17 C 0.010 3.990 18 H 0.139 0.861 19 C 0.235 3.765 20 N -0.509 5.509 21 C -0.110 4.110 22 C -0.107 4.107 23 C -0.041 4.041 24 C -0.122 4.122 25 S 0.166 5.834 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.074 0.926 29 H 0.115 0.885 30 H 0.382 0.618 31 H -0.273 1.273 32 H -0.216 1.216 33 H 0.421 0.579 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.104 0.896 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.658 -7.318 0.382 7.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.308 4.308 3 C -0.089 4.089 4 C -0.179 4.179 5 O -0.345 6.345 6 Si 0.491 3.509 7 C -0.794 4.794 8 S 2.784 3.216 9 O -0.936 6.936 10 O -0.921 6.921 11 N -0.847 5.847 12 C -0.022 4.022 13 C -0.117 4.117 14 H 0.111 0.889 15 C -0.159 4.159 16 C -0.151 4.151 17 C -0.011 4.011 18 H 0.156 0.844 19 C -0.082 4.082 20 N -0.185 5.185 21 C -0.149 4.149 22 C -0.145 4.145 23 C -0.163 4.163 24 C -0.180 4.180 25 S 0.433 5.567 26 H 0.085 0.915 27 H 0.107 0.893 28 H 0.092 0.908 29 H 0.133 0.867 30 H 0.232 0.768 31 H -0.198 1.198 32 H -0.141 1.141 33 H 0.263 0.737 34 H 0.108 0.892 35 H 0.126 0.874 36 H 0.084 0.916 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.114 0.886 45 H 0.122 0.878 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.148 -7.227 1.106 7.620 hybrid contribution -1.947 1.383 0.252 2.401 sum 0.201 -5.845 1.358 6.004 Atomic orbital electron populations 1.20387 0.86401 1.02179 1.04025 1.24601 1.01148 0.94885 1.10176 1.18585 0.90814 0.96631 1.02882 1.24967 0.87443 0.96758 1.08717 1.86606 1.22787 1.92227 1.32906 0.94977 0.97570 0.79840 0.78524 1.29152 1.10995 1.13598 1.25673 1.02080 0.73508 0.72938 0.73081 1.93570 1.41742 1.78019 1.80292 1.93022 1.77078 1.52690 1.69354 1.55458 1.75513 1.24831 1.28862 1.21935 0.99822 0.91386 0.89067 1.21457 0.97489 0.99188 0.93530 0.88868 1.21750 0.97985 1.00495 0.95705 1.21571 1.00461 0.97761 0.95338 1.19304 0.99898 0.96876 0.85033 0.84361 1.30124 0.91543 0.92403 0.94137 1.81356 1.11238 1.11859 1.14073 1.21562 0.95093 1.00570 0.97653 1.21520 1.01730 0.97606 0.93676 1.24855 1.01570 0.94466 0.95400 1.21167 0.86950 1.03142 1.06756 1.84383 0.95090 1.08094 1.69165 0.91481 0.89334 0.90774 0.86738 0.76809 1.19833 1.14098 0.73727 0.89161 0.87394 0.91648 0.89783 0.91288 0.90954 0.90382 0.91198 0.89304 0.89184 0.88612 0.87799 0.86540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.08 8.52 71.24 0.61 0.68 16 2 C -0.19 -0.16 6.47 24.59 0.16 0.00 16 3 C -0.08 -0.15 5.04 -20.92 -0.11 -0.25 16 4 C -0.07 -0.27 2.61 71.23 0.19 -0.08 16 5 O -0.54 -1.72 9.81 -148.98 -1.46 -3.19 16 6 Si 0.59 0.80 20.59 68.60 1.41 2.21 16 7 C -0.69 0.58 5.48 21.22 0.12 0.69 16 8 S 2.70 -4.30 4.81 -56.49 -0.27 -4.57 16 9 O -0.95 -0.42 14.36 -128.00 -1.84 -2.26 16 10 O -0.93 -3.47 12.79 -128.00 -1.64 -5.10 16 11 N -1.08 8.76 3.83 -187.49 -0.72 8.04 16 12 C 0.10 -1.35 5.44 86.38 0.47 -0.88 16 13 C -0.10 1.36 2.30 -10.80 -0.02 1.34 16 14 H 0.09 -1.31 8.14 -2.39 -0.02 -1.33 16 15 C -0.12 1.48 5.08 30.59 0.16 1.63 16 16 C -0.11 1.12 5.16 30.59 0.16 1.28 16 17 C 0.01 -0.10 2.57 -12.60 -0.03 -0.13 16 18 H 0.14 -1.95 8.14 -2.39 -0.02 -1.96 16 19 C 0.23 0.08 14.65 89.43 1.31 1.39 16 20 N -0.51 -4.73 18.55 20.02 0.37 -4.36 16 21 C -0.11 1.33 5.16 30.58 0.16 1.49 16 22 C -0.11 1.69 5.20 30.58 0.16 1.85 16 23 C -0.04 0.13 6.50 24.59 0.16 0.29 16 24 C -0.12 0.93 8.68 71.23 0.62 1.55 16 25 S 0.17 -0.41 23.31 -56.49 -1.32 -1.73 16 26 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 27 H 0.09 -0.35 6.53 -2.39 -0.02 -0.37 16 28 H 0.07 0.14 7.53 -2.39 -0.02 0.12 16 29 H 0.11 0.79 7.62 -2.39 -0.02 0.78 16 30 H 0.38 -1.29 7.35 -74.06 -0.54 -1.83 16 31 H -0.27 -2.48 7.11 99.48 0.71 -1.77 16 32 H -0.22 0.64 6.77 99.48 0.67 1.31 16 33 H 0.42 -3.97 4.24 -96.75 -0.41 -4.38 16 34 H 0.09 -1.46 8.14 -2.39 -0.02 -1.48 16 35 H 0.11 -1.69 7.20 -2.38 -0.02 -1.71 16 36 H 0.06 -0.70 5.76 -2.39 -0.01 -0.72 16 37 H 0.08 -1.14 8.14 -2.39 -0.02 -1.16 16 38 H 0.07 -0.58 8.14 -2.38 -0.02 -0.60 16 39 H 0.07 -0.65 8.14 -2.39 -0.02 -0.67 16 40 H 0.08 -0.91 8.14 -2.39 -0.02 -0.93 16 41 H 0.07 -0.74 8.14 -2.39 -0.02 -0.76 16 42 H 0.09 -1.60 8.14 -2.39 -0.02 -1.62 16 43 H 0.09 -1.52 8.14 -2.39 -0.02 -1.54 16 44 H 0.10 -1.02 8.14 -2.38 -0.02 -1.04 16 45 H 0.10 -0.53 6.96 -2.39 -0.02 -0.55 16 46 H 0.12 -1.45 7.26 -2.39 -0.02 -1.46 16 Total: 0.00 -22.72 368.91 -1.29 -24.01 By element: Atomic # 1 Polarization: -23.97 SS G_CDS: 0.08 Total: -23.89 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 4.09 Total: 10.84 kcal Atomic # 7 Polarization: 4.03 SS G_CDS: -0.35 Total: 3.68 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -4.94 Total: -10.55 kcal Atomic # 14 Polarization: 0.80 SS G_CDS: 1.41 Total: 2.21 kcal Atomic # 16 Polarization: -4.71 SS G_CDS: -1.59 Total: -6.30 kcal Total: -22.72 -1.29 -24.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16496582_15065288.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.662 kcal (2) G-P(sol) polarization free energy of solvation -22.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds