Wall clock time and date at job start Mon Mar 8 2021 10:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 H 1.09001 * 109.47503 * 26.11115 * 3 2 1 5 5 C 1.53001 * 109.46990 * 146.11484 * 3 2 1 6 6 C 1.53002 * 109.47211 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.46592 * 299.99262 * 6 5 3 8 8 H 1.09001 * 109.47158 * 300.00444 * 7 6 5 9 9 C 1.52994 * 109.46997 * 180.02562 * 7 6 5 10 10 N 1.46502 * 109.47540 * 175.00219 * 9 7 6 11 11 S 1.65595 * 120.00682 * 163.99130 * 10 9 7 12 12 O 1.42093 * 106.40444 * 177.82091 * 11 10 9 13 13 O 1.42108 * 106.39974 * 310.74566 * 11 10 9 14 14 C 1.76201 * 107.21596 * 64.28201 * 11 10 9 15 15 C 1.38212 * 119.99908 * 64.16688 * 14 11 10 16 16 C 1.50697 * 119.99860 * 0.02562 * 15 14 11 17 17 O 1.42902 * 109.47061 * 284.11933 * 16 15 14 18 18 Si 1.86298 * 109.46998 * 164.12178 * 16 15 14 19 19 C 1.38260 * 120.00004 * 179.74108 * 15 14 11 20 20 C 1.38221 * 119.99701 * 0.53591 * 19 15 14 21 21 C 1.38260 * 119.99917 * 359.73863 * 20 19 15 22 22 C 1.38213 * 119.99987 * 359.97438 * 21 20 19 23 23 C 1.53001 * 109.46740 * 60.00450 * 7 6 5 24 24 C 1.52998 * 109.47423 * 299.99447 * 23 7 6 25 25 H 1.09008 * 109.46623 * 299.99588 * 5 3 2 26 26 H 1.08992 * 109.47267 * 59.99607 * 5 3 2 27 27 H 1.08992 * 109.47666 * 59.99435 * 6 5 3 28 28 H 1.08995 * 109.47347 * 180.02562 * 6 5 3 29 29 H 1.08999 * 109.47231 * 295.00137 * 9 7 6 30 30 H 1.09001 * 109.47343 * 54.99910 * 9 7 6 31 31 H 0.97005 * 119.99272 * 343.99538 * 10 9 7 32 32 H 1.09000 * 109.47312 * 44.12267 * 16 15 14 33 33 H 0.96697 * 113.99509 * 180.02562 * 17 16 15 34 34 H 1.48503 * 110.00244 * 60.00023 * 18 16 15 35 35 H 1.48503 * 110.00370 * 181.31844 * 18 16 15 36 36 H 1.07996 * 120.00462 * 180.29421 * 19 15 14 37 37 H 1.07997 * 119.99762 * 179.76995 * 20 19 15 38 38 H 1.07995 * 119.99641 * 180.02562 * 21 20 19 39 39 H 1.07999 * 119.99704 * 179.97438 * 22 21 20 40 40 H 1.09008 * 109.46623 * 179.97438 * 23 7 6 41 41 H 1.08992 * 109.47267 * 59.99980 * 23 7 6 42 42 H 1.09001 * 109.47401 * 300.00572 * 24 23 7 43 43 H 1.08991 * 109.47879 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 1 2.9718 -0.9220 -0.4523 5 6 3.1174 1.1984 -0.8042 6 6 4.6475 1.1988 -0.8048 7 6 5.1579 1.2966 0.6343 8 1 4.7944 2.2192 1.0868 9 6 6.6878 1.2976 0.6338 10 7 7.1765 1.5110 1.9983 11 16 8.7525 1.1709 2.3761 12 8 8.9240 1.5276 3.7408 13 8 9.0128 -0.1332 1.8749 14 6 9.7621 2.2731 1.4431 15 6 9.6926 3.6345 1.6713 16 6 8.7539 4.1761 2.7184 17 8 7.4149 4.1441 2.2201 18 14 9.2235 5.9326 3.1246 19 6 10.4887 4.4990 0.9429 20 6 11.3459 4.0027 -0.0211 21 6 11.4112 2.6413 -0.2532 22 6 10.6197 1.7766 0.4790 23 6 4.6484 0.0989 1.4385 24 6 3.1184 0.0984 1.4391 25 1 2.7541 1.1285 -1.8296 26 1 2.7537 2.1209 -0.3520 27 1 5.0109 0.2762 -1.2573 28 1 5.0104 2.0523 -1.3774 29 1 7.0517 0.3393 0.2633 30 1 7.0504 2.0979 -0.0113 31 1 6.5768 1.8515 2.6805 32 1 8.8214 3.5646 3.6182 33 1 6.7555 4.4794 2.8428 34 1 9.1354 6.7767 1.9060 35 1 8.3251 6.4677 4.1791 36 1 10.4379 5.5624 1.1244 37 1 11.9650 4.6783 -0.5926 38 1 12.0813 2.2535 -1.0062 39 1 10.6704 0.7132 0.2974 40 1 5.0124 0.1684 2.4637 41 1 5.0119 -0.8237 0.9860 42 1 2.7549 1.0210 1.8916 43 1 2.7555 -0.7545 2.0123 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16496582_2726874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:44:33 Heat of formation + Delta-G solvation = -56.273216 kcal Electronic energy + Delta-G solvation = -27912.823507 eV Core-core repulsion = 24051.245130 eV Total energy + Delta-G solvation = -3861.578377 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 337.118 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.57924 -40.18281 -38.52594 -37.75079 -37.45637 -36.98079 -35.82905 -32.92803 -32.34348 -32.11313 -31.61091 -26.94864 -26.75526 -24.36828 -23.59277 -22.99604 -22.60347 -20.99067 -20.38373 -19.02118 -18.66940 -18.52729 -18.34593 -17.49333 -17.00560 -16.47178 -16.20765 -15.86974 -15.80241 -15.30373 -15.24559 -15.09958 -15.01947 -14.75376 -14.36171 -14.20528 -14.04484 -13.86573 -13.67442 -13.49365 -13.39360 -13.31783 -13.19082 -13.08826 -13.02706 -12.85224 -12.59222 -12.20994 -11.96980 -11.95360 -11.93353 -11.61468 -11.41665 -11.17961 -10.96513 -10.50518 -10.36971 -10.25705 -10.00363 -4.92360 -0.60120 -0.23277 0.17790 1.23708 1.58224 1.74673 1.77389 1.87500 2.01628 2.40093 2.70765 2.93795 3.21375 3.39081 3.74480 3.77931 3.80507 3.83101 3.89896 4.03284 4.17829 4.22003 4.23905 4.35408 4.38796 4.49562 4.52095 4.60233 4.62679 4.63712 4.64710 4.82458 4.85956 4.96848 5.03245 5.07510 5.13817 5.20658 5.22556 5.26552 5.33566 5.33977 5.35839 5.50491 5.66272 5.79887 6.23411 6.55271 6.57250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C 0.236 3.764 3 C 0.009 3.991 4 H 0.137 0.863 5 C -0.106 4.106 6 C -0.108 4.108 7 C -0.087 4.087 8 H 0.090 0.910 9 C 0.124 3.876 10 N -1.087 6.087 11 S 2.707 3.293 12 O -0.987 6.987 13 O -0.989 6.989 14 C -0.670 4.670 15 C 0.023 3.977 16 C -0.140 4.140 17 O -0.530 6.530 18 Si 0.763 3.237 19 C -0.151 4.151 20 C -0.057 4.057 21 C -0.137 4.137 22 C -0.037 4.037 23 C -0.115 4.115 24 C -0.108 4.108 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.427 0.573 32 H 0.107 0.893 33 H 0.397 0.603 34 H -0.278 1.278 35 H -0.282 1.282 36 H 0.147 0.853 37 H 0.162 0.838 38 H 0.159 0.841 39 H 0.148 0.852 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.827 3.825 -2.491 7.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.183 5.183 2 C -0.081 4.081 3 C -0.012 4.012 4 H 0.155 0.845 5 C -0.145 4.145 6 C -0.147 4.147 7 C -0.107 4.107 8 H 0.108 0.892 9 C -0.002 4.002 10 N -0.851 5.851 11 S 2.798 3.202 12 O -0.977 6.977 13 O -0.979 6.979 14 C -0.758 4.758 15 C 0.021 3.979 16 C -0.249 4.249 17 O -0.340 6.340 18 Si 0.666 3.334 19 C -0.169 4.169 20 C -0.075 4.075 21 C -0.156 4.156 22 C -0.056 4.056 23 C -0.153 4.153 24 C -0.147 4.147 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.264 0.736 32 H 0.125 0.875 33 H 0.248 0.752 34 H -0.205 1.205 35 H -0.208 1.208 36 H 0.164 0.836 37 H 0.180 0.820 38 H 0.176 0.824 39 H 0.165 0.835 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.550 3.682 -2.535 6.379 hybrid contribution -1.072 0.407 -0.008 1.146 sum 3.479 4.089 -2.542 5.940 Atomic orbital electron populations 1.81300 1.15319 1.10958 1.10677 1.29992 0.95760 0.91127 0.91198 1.19280 0.78449 1.03638 0.99842 0.84544 1.21527 0.96555 0.96287 1.00154 1.21511 0.93500 1.04014 0.95631 1.21346 0.92428 0.99949 0.96938 0.89181 1.21414 0.95945 1.01625 0.81187 1.54952 1.26978 1.83424 1.19727 1.01167 0.73242 0.73094 0.72678 1.93516 1.86009 1.84504 1.33671 1.93546 1.85232 1.37368 1.81746 1.30645 1.18620 1.09758 1.16781 1.18967 0.93827 0.91471 0.93628 1.25508 0.85509 1.15437 0.98445 1.86557 1.14436 1.86710 1.46309 0.93557 0.90114 0.71631 0.78114 1.21518 0.97742 1.00493 0.97129 1.21847 0.94963 0.96201 0.94477 1.21705 0.99800 0.93634 1.00469 1.21252 0.91828 1.01453 0.91103 1.21630 0.93445 0.98944 1.01288 1.21545 0.96556 1.03425 0.93173 0.90562 0.91179 0.89975 0.90331 0.90545 0.91274 0.73554 0.87540 0.75167 1.20453 1.20827 0.83578 0.82035 0.82383 0.83478 0.90878 0.90514 0.91005 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -5.31 18.54 20.01 0.37 -4.94 16 2 C 0.24 0.47 14.65 89.44 1.31 1.78 16 3 C 0.01 -0.07 2.56 -12.60 -0.03 -0.10 16 4 H 0.14 -1.49 8.14 -2.39 -0.02 -1.51 16 5 C -0.11 0.93 5.16 30.60 0.16 1.09 16 6 C -0.11 1.14 5.20 30.60 0.16 1.30 16 7 C -0.09 0.84 2.22 -10.79 -0.02 0.81 16 8 H 0.09 -0.94 8.14 -2.39 -0.02 -0.96 16 9 C 0.12 -0.82 5.61 86.38 0.48 -0.33 16 10 N -1.09 4.66 3.75 -187.50 -0.70 3.96 16 11 S 2.71 8.15 5.07 -56.49 -0.29 7.87 16 12 O -0.99 -7.55 15.54 -128.00 -1.99 -9.54 16 13 O -0.99 -8.26 16.45 -128.00 -2.11 -10.37 16 14 C -0.67 -1.25 5.86 22.27 0.13 -1.12 16 15 C 0.02 0.01 5.28 -19.87 -0.10 -0.09 16 16 C -0.14 0.27 2.02 71.24 0.14 0.42 16 17 O -0.53 2.72 10.58 -148.98 -1.58 1.14 16 18 Si 0.76 -2.79 30.22 68.60 2.07 -0.72 16 19 C -0.15 0.29 8.66 22.27 0.19 0.49 16 20 C -0.06 0.25 10.05 22.27 0.22 0.47 16 21 C -0.14 0.47 10.05 22.27 0.22 0.69 16 22 C -0.04 -0.01 9.55 22.27 0.21 0.20 16 23 C -0.12 1.02 5.09 30.59 0.16 1.18 16 24 C -0.11 0.86 5.16 30.59 0.16 1.02 16 25 H 0.08 -0.64 8.14 -2.38 -0.02 -0.66 16 26 H 0.07 -0.54 8.14 -2.39 -0.02 -0.56 16 27 H 0.08 -0.96 8.14 -2.39 -0.02 -0.98 16 28 H 0.08 -0.83 8.14 -2.39 -0.02 -0.85 16 29 H 0.08 -0.44 7.75 -2.39 -0.02 -0.46 16 30 H 0.07 -0.45 8.14 -2.39 -0.02 -0.47 16 31 H 0.43 -3.40 7.95 -96.74 -0.77 -4.17 16 32 H 0.11 -0.09 5.38 -2.39 -0.01 -0.10 16 33 H 0.40 -4.84 8.74 -74.06 -0.65 -5.49 16 34 H -0.28 -0.13 6.73 99.48 0.67 0.54 16 35 H -0.28 -0.15 7.11 99.48 0.71 0.56 16 36 H 0.15 -0.70 4.91 -2.91 -0.01 -0.72 16 37 H 0.16 -1.64 8.06 -2.91 -0.02 -1.66 16 38 H 0.16 -1.34 8.06 -2.91 -0.02 -1.36 16 39 H 0.15 -0.13 7.34 -2.91 -0.02 -0.15 16 40 H 0.07 -0.60 7.56 -2.38 -0.02 -0.62 16 41 H 0.08 -0.68 8.14 -2.39 -0.02 -0.70 16 42 H 0.07 -0.53 8.14 -2.39 -0.02 -0.55 16 43 H 0.07 -0.51 8.14 -2.39 -0.02 -0.53 16 Total: 0.00 -25.01 358.26 -1.19 -26.21 By element: Atomic # 1 Polarization: -21.05 SS G_CDS: -0.37 Total: -21.42 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 3.39 Total: 7.82 kcal Atomic # 7 Polarization: -0.65 SS G_CDS: -0.33 Total: -0.98 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -5.67 Total: -18.77 kcal Atomic # 14 Polarization: -2.79 SS G_CDS: 2.07 Total: -0.72 kcal Atomic # 16 Polarization: 8.15 SS G_CDS: -0.29 Total: 7.87 kcal Total: -25.01 -1.19 -26.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16496582_2726874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.068 kcal (2) G-P(sol) polarization free energy of solvation -25.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds