Wall clock time and date at job start Mon Mar 8 2021 11:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52999 * 109.46623 * 119.99900 * 2 1 3 5 5 O 1.45194 * 109.46979 * 239.99917 * 2 1 3 6 6 C 1.34637 * 117.00311 * 60.00565 * 5 2 1 7 7 O 1.21515 * 119.99443 * 359.97438 * 6 5 2 8 8 N 1.34771 * 120.00399 * 179.97438 * 6 5 2 9 9 C 1.46504 * 120.00294 * 179.97438 * 8 6 5 10 10 H 1.09005 * 112.84739 * 336.20203 * 9 8 6 11 11 C 1.53782 * 113.61097 * 107.50529 * 9 8 6 12 12 C 1.53772 * 87.07971 * 89.11784 * 11 9 8 13 13 H 1.09001 * 113.61880 * 270.88066 * 12 11 9 14 14 C 1.53001 * 113.68951 * 139.99188 * 12 11 9 15 15 C 1.53000 * 109.47241 * 87.46273 * 14 12 11 16 16 N 1.46506 * 109.47037 * 180.02562 * 15 14 12 17 17 S 1.65609 * 119.99783 * 164.99810 * 16 15 14 18 18 O 1.42098 * 106.39729 * 178.53944 * 17 16 15 19 19 O 1.42097 * 106.39973 * 311.46129 * 17 16 15 20 20 C 1.76197 * 107.21530 * 65.00015 * 17 16 15 21 21 C 1.33396 * 125.20196 * 90.00008 * 20 17 16 22 22 C 1.50692 * 122.54000 * 359.95390 * 21 20 17 23 23 O 1.42900 * 109.47228 * 75.00045 * 22 21 20 24 24 Si 1.86302 * 109.47259 * 194.99939 * 22 21 20 25 25 C 1.38427 * 114.91721 * 179.97438 * 21 20 17 26 26 C 1.33386 * 114.92469 * 0.02562 * 25 21 20 27 27 S 1.75881 * 109.59262 * 359.75584 * 26 25 21 28 28 C 1.53777 * 87.08534 * 25.43124 * 12 11 9 29 29 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 32 32 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 33 33 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 35 35 H 1.09001 * 109.47362 * 60.00551 * 4 2 1 36 36 H 1.09002 * 109.46716 * 179.97438 * 4 2 1 37 37 H 1.09000 * 109.47486 * 299.99829 * 4 2 1 38 38 H 0.97003 * 119.99930 * 359.97438 * 8 6 5 39 39 H 1.09001 * 113.61224 * 203.67155 * 11 9 8 40 40 H 1.09000 * 113.61664 * 334.56682 * 11 9 8 41 41 H 1.09006 * 109.47204 * 207.46317 * 14 12 11 42 42 H 1.08999 * 109.47473 * 327.46253 * 14 12 11 43 43 H 1.08996 * 109.47265 * 299.99576 * 15 14 12 44 44 H 1.09001 * 109.47454 * 60.00393 * 15 14 12 45 45 H 0.96997 * 120.00322 * 344.99679 * 16 15 14 46 46 H 1.09007 * 109.47318 * 315.00304 * 22 21 20 47 47 H 0.96698 * 114.00231 * 59.99955 * 23 22 21 48 48 H 1.48505 * 109.99745 * 58.68170 * 24 22 21 49 49 H 1.48501 * 110.00180 * 179.97438 * 24 22 21 50 50 H 1.08008 * 122.53316 * 180.02562 * 25 21 20 51 51 H 1.07999 * 125.20336 * 179.97438 * 26 25 21 52 52 H 1.08999 * 113.61499 * 220.02117 * 28 12 11 53 53 H 1.09001 * 113.69083 * 89.12404 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 2.0140 -0.6845 -1.1855 6 6 1.6524 -0.1729 -2.3772 7 8 0.9511 0.8183 -2.4252 8 7 2.0681 -0.7600 -3.5168 9 6 1.6741 -0.2036 -4.8136 10 1 0.7594 0.3868 -4.7605 11 6 2.8220 0.5008 -5.5560 12 6 3.1503 -0.8649 -6.1818 13 1 3.8470 -1.4598 -5.5912 14 6 3.5405 -0.7863 -7.6591 15 6 5.0452 -0.5356 -7.7766 16 7 5.4187 -0.4598 -9.1912 17 16 6.8893 0.1647 -9.6270 18 8 6.9621 0.0691 -11.0429 19 8 7.0292 1.3908 -8.9225 20 6 8.1250 -0.9184 -8.9909 21 6 8.6350 -1.9674 -9.6380 22 6 8.1966 -2.3546 -11.0268 23 8 8.7615 -1.4471 -11.9751 24 14 8.7767 -4.0849 -11.4014 25 6 9.5972 -2.6737 -8.9369 26 6 9.8682 -2.1985 -7.7204 27 16 8.8794 -0.7778 -7.4083 28 6 1.6757 -1.2362 -5.9531 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 -1.7489 1.2493 36 1 3.1300 -0.7217 1.2491 37 1 1.6766 -0.2074 2.1393 38 1 2.6283 -1.5510 -3.4785 39 1 2.4838 1.2427 -6.2794 40 1 3.6030 0.8775 -4.8955 41 1 3.2891 -1.7256 -8.1518 42 1 2.9979 0.0303 -8.1353 43 1 5.2966 0.4036 -7.2840 44 1 5.5879 -1.3523 -7.3005 45 1 4.8046 -0.7753 -9.8726 46 1 7.1090 -2.3146 -11.0889 47 1 9.7284 -1.4300 -11.9755 48 1 8.2216 -5.0340 -10.4032 49 1 8.3501 -4.4790 -12.7682 50 1 10.0911 -3.5436 -9.3442 51 1 10.5875 -2.6195 -7.0335 52 1 1.5313 -2.2617 -5.6132 53 1 1.0229 -0.9699 -6.7845 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16498398_13652106.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:05:46 Heat of formation + Delta-G solvation = -125.572578 kcal Electronic energy + Delta-G solvation = -36372.705224 eV Core-core repulsion = 31465.985328 eV Total energy + Delta-G solvation = -4906.719896 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 419.136 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.95855 -40.49742 -40.03751 -38.33675 -38.04779 -37.07217 -36.89381 -36.78766 -35.35412 -34.09763 -31.38205 -30.94656 -28.39672 -28.32572 -27.97439 -26.71149 -25.82258 -24.25164 -23.84070 -22.73794 -21.53519 -21.16049 -20.32649 -19.95036 -19.46548 -19.28821 -18.49389 -18.24405 -17.61087 -17.29962 -17.22068 -16.63537 -16.57235 -16.28423 -16.02409 -15.81015 -15.73355 -15.58730 -15.40968 -15.11676 -15.06860 -14.91942 -14.43023 -14.23298 -13.94847 -13.85619 -13.68055 -13.45796 -13.42019 -13.33777 -13.24942 -13.19583 -13.15303 -12.94967 -12.89379 -12.76110 -12.72878 -12.60935 -12.47079 -12.34802 -12.30753 -12.11842 -11.82251 -11.69848 -11.43043 -11.29814 -11.17607 -11.12395 -10.62048 -10.43420 -10.38647 -10.17931 -9.63631 -5.02818 -0.83060 -0.56309 0.31184 0.74167 1.11468 1.23625 1.30476 1.65118 1.70496 1.96822 1.97882 2.60833 3.10048 3.35042 3.49651 3.50375 3.53369 3.61878 3.71643 3.76346 3.84659 3.85418 3.91798 3.97978 4.11428 4.21177 4.24236 4.38111 4.44017 4.45508 4.52734 4.56829 4.58510 4.68120 4.73798 4.75551 4.80247 4.81763 4.85115 4.85193 4.89516 4.92150 4.93176 5.04825 5.08836 5.14165 5.15187 5.23670 5.24419 5.26913 5.33323 5.50868 5.63733 5.96077 6.37037 6.81386 7.31610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.128 3.872 3 C -0.180 4.180 4 C -0.137 4.137 5 O -0.369 6.369 6 C 0.644 3.356 7 O -0.594 6.594 8 N -0.682 5.682 9 C 0.126 3.874 10 H 0.087 0.913 11 C -0.153 4.153 12 C -0.100 4.100 13 H 0.106 0.894 14 C -0.112 4.112 15 C 0.106 3.894 16 N -1.108 6.108 17 S 2.716 3.284 18 O -0.953 6.953 19 O -0.990 6.990 20 C -0.796 4.796 21 C 0.009 3.991 22 C -0.092 4.092 23 O -0.530 6.530 24 Si 0.795 3.205 25 C -0.170 4.170 26 C -0.144 4.144 27 S 0.202 5.798 28 C -0.126 4.126 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.417 0.583 39 H 0.097 0.903 40 H 0.062 0.938 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.080 0.920 45 H 0.428 0.572 46 H 0.105 0.895 47 H 0.388 0.612 48 H -0.270 1.270 49 H -0.297 1.297 50 H 0.188 0.812 51 H 0.212 0.788 52 H 0.087 0.913 53 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.898 -8.768 4.049 10.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.238 4.238 4 C -0.194 4.194 5 O -0.283 6.283 6 C 0.398 3.602 7 O -0.485 6.485 8 N -0.341 5.341 9 C 0.021 3.979 10 H 0.105 0.895 11 C -0.192 4.192 12 C -0.120 4.120 13 H 0.124 0.876 14 C -0.150 4.150 15 C -0.019 4.019 16 N -0.872 5.872 17 S 2.804 3.196 18 O -0.943 6.943 19 O -0.980 6.980 20 C -0.999 4.999 21 C -0.010 4.010 22 C -0.203 4.203 23 O -0.337 6.337 24 Si 0.698 3.302 25 C -0.199 4.199 26 C -0.282 4.282 27 S 0.469 5.531 28 C -0.164 4.164 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.117 0.883 38 H 0.254 0.746 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.108 0.892 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.098 0.902 45 H 0.265 0.735 46 H 0.123 0.877 47 H 0.237 0.763 48 H -0.196 1.196 49 H -0.225 1.225 50 H 0.204 0.796 51 H 0.229 0.771 52 H 0.105 0.895 53 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.827 -7.102 4.752 9.000 hybrid contribution -0.259 -0.973 -0.902 1.352 sum 2.568 -8.075 3.850 9.307 Atomic orbital electron populations 1.22476 0.94058 1.02954 1.04250 1.22353 0.94456 0.92446 0.81619 1.22474 1.01637 0.95409 1.04232 1.21891 1.02479 1.01261 0.93803 1.86304 1.71530 1.56610 1.13898 1.18348 0.78606 0.81423 0.81817 1.90910 1.42320 1.27938 1.87363 1.44361 1.54845 1.32675 1.02247 1.21905 0.98460 0.97210 0.80277 0.89499 1.23612 0.98202 0.97720 0.99641 1.22555 0.97039 0.96728 0.95634 0.87603 1.21741 0.92949 1.03920 0.96436 1.21569 0.98532 1.02519 0.79301 1.55369 1.33640 1.82529 1.15671 1.01026 0.72822 0.72985 0.72783 1.93688 1.86097 1.86468 1.28082 1.93567 1.86649 1.41963 1.75825 1.35495 1.29345 1.22864 1.12223 1.19453 0.93610 0.91360 0.96601 1.25529 1.02080 1.07563 0.85138 1.86784 1.26250 1.63969 1.56669 0.93683 0.89606 0.70010 0.76945 1.20505 1.00434 1.03811 0.95141 1.26652 1.02946 0.97578 1.01005 1.84488 1.33047 1.26313 1.09284 1.23353 0.96791 0.99335 0.96908 0.91874 0.91858 0.89476 0.89472 0.91935 0.91908 0.91098 0.91137 0.88327 0.74574 0.88462 0.91884 0.89179 0.90485 0.91138 0.90201 0.73495 0.87734 0.76347 1.19560 1.22490 0.79570 0.77097 0.89486 0.87239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.60 8.37 71.98 0.60 0.00 16 2 C 0.13 0.38 1.13 -10.79 -0.01 0.37 16 3 C -0.18 -0.65 8.37 71.98 0.60 -0.05 16 4 C -0.14 0.32 8.85 71.98 0.64 0.96 16 5 O -0.37 -1.96 9.94 -55.46 -0.55 -2.51 16 6 C 0.64 4.34 8.06 129.79 1.05 5.39 16 7 O -0.59 -7.49 11.48 19.79 0.23 -7.26 16 8 N -0.68 0.07 5.27 -567.60 -2.99 -2.92 16 9 C 0.13 -0.20 4.32 45.52 0.20 0.00 16 10 H 0.09 0.25 7.46 -2.38 -0.02 0.23 16 11 C -0.15 0.45 7.43 31.12 0.23 0.68 16 12 C -0.10 0.76 3.52 -10.27 -0.04 0.73 16 13 H 0.11 -1.01 8.13 -2.39 -0.02 -1.03 16 14 C -0.11 0.84 5.20 30.59 0.16 1.00 16 15 C 0.11 -0.43 6.21 86.38 0.54 0.11 16 16 N -1.11 1.38 6.00 -187.48 -1.12 0.25 16 17 S 2.72 17.11 5.66 -56.49 -0.32 16.79 16 18 O -0.95 -11.25 14.29 -119.53 -1.71 -12.96 16 19 O -0.99 -12.72 17.38 -128.00 -2.22 -14.94 16 20 C -0.80 -1.86 6.54 66.72 0.44 -1.42 16 21 C 0.01 -0.01 5.13 -20.92 -0.11 -0.11 16 22 C -0.09 -0.06 1.79 71.23 0.13 0.07 16 23 O -0.53 -2.13 11.12 -128.48 -1.43 -3.56 16 24 Si 0.79 -3.38 30.25 68.60 2.07 -1.30 16 25 C -0.17 1.08 8.74 21.22 0.19 1.26 16 26 C -0.14 1.03 11.23 66.72 0.75 1.78 16 27 S 0.20 -0.22 23.21 -56.49 -1.31 -1.53 16 28 C -0.13 0.94 7.39 31.12 0.23 1.17 16 29 H 0.06 0.56 5.88 -2.39 -0.01 0.55 16 30 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 32 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 33 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.06 0.58 5.88 -2.39 -0.01 0.56 16 35 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 36 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 37 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 38 H 0.42 -2.12 8.81 -92.71 -0.82 -2.93 16 39 H 0.10 -0.29 7.90 -2.39 -0.02 -0.31 16 40 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 41 H 0.09 -0.90 8.14 -2.38 -0.02 -0.92 16 42 H 0.08 -0.53 7.85 -2.39 -0.02 -0.54 16 43 H 0.07 -0.10 7.75 -2.39 -0.02 -0.11 16 44 H 0.08 -0.56 8.14 -2.39 -0.02 -0.58 16 45 H 0.43 -2.13 8.65 -96.75 -0.84 -2.97 16 46 H 0.11 0.22 7.17 -2.38 -0.02 0.20 16 47 H 0.39 -2.09 8.70 -74.06 -0.64 -2.74 16 48 H -0.27 0.42 7.11 99.48 0.71 1.13 16 49 H -0.30 -1.16 7.11 99.48 0.71 -0.46 16 50 H 0.19 -2.41 5.73 -2.91 -0.02 -2.43 16 51 H 0.21 -2.97 8.06 -2.91 -0.02 -3.00 16 52 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 53 H 0.11 -0.95 8.10 -2.39 -0.02 -0.97 16 Total: 0.00 -30.79 446.74 -5.07 -35.86 By element: Atomic # 1 Polarization: -16.54 SS G_CDS: -1.30 Total: -17.83 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 5.58 Total: 11.92 kcal Atomic # 7 Polarization: 1.45 SS G_CDS: -4.11 Total: -2.67 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -5.69 Total: -41.23 kcal Atomic # 14 Polarization: -3.38 SS G_CDS: 2.07 Total: -1.30 kcal Atomic # 16 Polarization: 16.89 SS G_CDS: -1.63 Total: 15.25 kcal Total: -30.79 -5.07 -35.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16498398_13652106.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.716 kcal (2) G-P(sol) polarization free energy of solvation -30.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds