Wall clock time and date at job start Mon Mar 8 2021 11:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47204 * 2 1 4 4 C 1.53003 * 109.47225 * 239.99965 * 2 1 3 5 5 O 1.45205 * 109.47005 * 120.00055 * 2 1 3 6 6 C 1.34633 * 117.00020 * 60.00207 * 5 2 1 7 7 O 1.21512 * 119.99962 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99701 * 180.02562 * 6 5 2 9 9 C 1.46502 * 119.99779 * 179.97438 * 8 6 5 10 10 H 1.09003 * 112.85061 * 23.79419 * 9 8 6 11 11 C 1.53779 * 113.61410 * 154.99279 * 9 8 6 12 12 C 1.53785 * 87.08122 * 89.11609 * 11 9 8 13 13 H 1.09001 * 113.61341 * 270.80088 * 12 11 9 14 14 C 1.53000 * 113.61600 * 139.97996 * 12 11 9 15 15 C 1.53000 * 109.46945 * 174.99864 * 14 12 11 16 16 N 1.46504 * 109.46946 * 179.97438 * 15 14 12 17 17 S 1.65595 * 119.99756 * 163.51736 * 16 15 14 18 18 O 1.42100 * 106.40407 * 310.43791 * 17 16 15 19 19 O 1.42097 * 106.40191 * 177.51377 * 17 16 15 20 20 C 1.76201 * 107.21857 * 63.97836 * 17 16 15 21 21 C 1.33384 * 122.54147 * 67.02552 * 20 17 16 22 22 C 1.50702 * 125.20287 * 0.02562 * 21 20 17 23 23 O 1.42895 * 109.47146 * 316.78775 * 22 21 20 24 24 Si 1.86296 * 109.47435 * 196.78147 * 22 21 20 25 25 S 1.75884 * 109.59390 * 179.75261 * 21 20 17 26 26 C 1.75878 * 90.97051 * 0.23134 * 25 21 20 27 27 C 1.33382 * 109.59581 * 359.97438 * 26 25 21 28 28 C 1.53778 * 87.08121 * 25.43138 * 12 11 9 29 29 H 1.09001 * 109.47505 * 300.00162 * 1 2 3 30 30 H 1.08999 * 109.47364 * 59.99987 * 1 2 3 31 31 H 1.09004 * 109.47107 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47685 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47304 * 299.99971 * 3 2 1 34 34 H 1.09005 * 109.47669 * 59.99814 * 3 2 1 35 35 H 1.08999 * 109.46830 * 299.99788 * 4 2 1 36 36 H 1.08999 * 109.46911 * 59.99769 * 4 2 1 37 37 H 1.08999 * 109.46819 * 180.02562 * 4 2 1 38 38 H 0.96996 * 120.00183 * 359.97438 * 8 6 5 39 39 H 1.08996 * 113.61850 * 334.57067 * 11 9 8 40 40 H 1.09000 * 113.61660 * 203.66166 * 11 9 8 41 41 H 1.09001 * 109.47163 * 54.99939 * 14 12 11 42 42 H 1.08999 * 109.46885 * 294.99889 * 14 12 11 43 43 H 1.09001 * 109.47128 * 60.00054 * 15 14 12 44 44 H 1.08999 * 109.47669 * 300.00183 * 15 14 12 45 45 H 0.96999 * 119.99989 * 343.52063 * 16 15 14 46 46 H 1.09001 * 109.47162 * 76.77978 * 22 21 20 47 47 H 0.96695 * 114.00257 * 180.02562 * 23 22 21 48 48 H 1.48500 * 109.99917 * 298.68413 * 24 22 21 49 49 H 1.48500 * 109.99554 * 59.99917 * 24 22 21 50 50 H 1.08007 * 125.20207 * 180.02562 * 26 25 21 51 51 H 1.08004 * 122.54044 * 180.02562 * 27 26 25 52 52 H 1.09002 * 113.61886 * 89.11788 * 28 12 11 53 53 H 1.09004 * 113.61895 * 220.02398 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0139 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5040 8 7 2.0672 -2.6654 2.4172 9 6 1.6731 -4.0665 2.5837 10 1 1.4207 -4.5503 1.6400 11 6 2.6461 -4.8810 3.4525 12 6 1.8052 -4.4451 4.6641 13 1 2.1355 -3.5068 5.1099 14 6 1.5991 -5.5539 5.6980 15 6 0.8622 -4.9874 6.9133 16 7 0.6643 -6.0493 7.9030 17 16 0.2720 -5.6629 9.4647 18 8 1.2018 -4.6710 9.8784 19 8 0.0933 -6.8947 10.1501 20 6 -1.3064 -4.8806 9.4278 21 6 -2.4212 -5.5300 9.0892 22 6 -2.4955 -6.9841 8.7003 23 8 -1.4142 -7.2977 7.8204 24 14 -4.1136 -7.3144 7.8381 25 16 -3.7923 -4.4316 9.1735 26 6 -2.7424 -3.1116 9.6720 27 6 -1.4830 -3.5448 9.7451 28 6 0.6268 -4.2849 3.6893 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7216 -1.2490 38 1 2.6267 -2.2365 3.0834 39 1 3.6613 -4.4845 3.4603 40 1 2.6108 -5.9532 3.2597 41 1 2.5677 -5.9445 6.0100 42 1 1.0086 -6.3568 5.2567 43 1 -0.1064 -4.5968 6.6014 44 1 1.4527 -4.1844 7.3546 45 1 0.7630 -6.9787 7.6435 46 1 -2.4274 -7.6033 9.5947 47 1 -1.3993 -8.2194 7.5285 48 1 -5.2458 -7.0224 8.7536 49 1 -4.2187 -6.4761 6.6169 50 1 -3.0678 -2.1044 9.8869 51 1 -0.6637 -2.9030 10.0335 52 1 0.0394 -5.1942 3.5611 53 1 0.0118 -3.4071 3.8880 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16498398_14772022.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:05:53 Heat of formation + Delta-G solvation = -121.475249 kcal Electronic energy + Delta-G solvation = -37057.053264 eV Core-core repulsion = 32150.511042 eV Total energy + Delta-G solvation = -4906.542222 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 419.136 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -41.94945 -40.45465 -39.56511 -38.41879 -38.04228 -37.44241 -36.93007 -36.51986 -35.33612 -34.05024 -32.01201 -30.78463 -28.40136 -28.33416 -27.51984 -26.66004 -25.73063 -24.33201 -23.76027 -22.61737 -21.83016 -21.16010 -20.34672 -19.84248 -19.31127 -18.93040 -18.64804 -18.13188 -17.88225 -17.60248 -17.23719 -17.00670 -16.61683 -16.10979 -16.07244 -15.82516 -15.75160 -15.42893 -15.23589 -15.07011 -14.97454 -14.69033 -14.48579 -14.36640 -14.20573 -13.91167 -13.77120 -13.43098 -13.38744 -13.25611 -13.24219 -13.16270 -13.14898 -12.95052 -12.90015 -12.82767 -12.73604 -12.67665 -12.41597 -12.34096 -12.26318 -12.14479 -11.88232 -11.75103 -11.43375 -11.28584 -11.15108 -11.04214 -10.77532 -10.24777 -10.19957 -10.15005 -9.85283 -5.22218 -0.69245 -0.53461 0.21855 0.56058 0.99567 1.11317 1.12863 1.55055 1.70793 1.84750 2.13330 2.72076 3.08821 3.10955 3.42268 3.54956 3.58428 3.62491 3.71026 3.76087 3.89479 3.90992 3.91569 4.03769 4.14072 4.21290 4.39506 4.42098 4.45480 4.52393 4.57630 4.58185 4.61627 4.68873 4.72843 4.73063 4.80127 4.80983 4.84321 4.86855 4.89995 4.95063 5.03065 5.04296 5.08080 5.13881 5.18637 5.23749 5.28979 5.35931 5.41026 5.53029 5.66829 6.37241 6.37498 6.76901 7.31585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.645 3.355 7 O -0.593 6.593 8 N -0.684 5.684 9 C 0.124 3.876 10 H 0.089 0.911 11 C -0.126 4.126 12 C -0.104 4.104 13 H 0.094 0.906 14 C -0.106 4.106 15 C 0.118 3.882 16 N -1.075 6.075 17 S 2.733 3.267 18 O -0.997 6.997 19 O -0.978 6.978 20 C -0.674 4.674 21 C -0.060 4.060 22 C -0.078 4.078 23 O -0.547 6.547 24 Si 0.777 3.223 25 S 0.118 5.882 26 C -0.207 4.207 27 C -0.094 4.094 28 C -0.146 4.146 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.416 0.584 39 H 0.081 0.919 40 H 0.115 0.885 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.431 0.569 46 H 0.117 0.883 47 H 0.417 0.583 48 H -0.270 1.270 49 H -0.274 1.274 50 H 0.198 0.802 51 H 0.164 0.836 52 H 0.104 0.896 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.925 -2.710 -3.077 4.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.286 6.286 6 C 0.398 3.602 7 O -0.484 6.484 8 N -0.343 5.343 9 C 0.020 3.980 10 H 0.107 0.893 11 C -0.164 4.164 12 C -0.123 4.123 13 H 0.113 0.887 14 C -0.145 4.145 15 C -0.009 4.009 16 N -0.840 5.840 17 S 2.820 3.180 18 O -0.987 6.987 19 O -0.968 6.968 20 C -0.774 4.774 21 C -0.180 4.180 22 C -0.189 4.189 23 O -0.360 6.360 24 Si 0.678 3.322 25 S 0.380 5.620 26 C -0.342 4.342 27 C -0.122 4.122 28 C -0.184 4.184 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.253 0.747 39 H 0.100 0.900 40 H 0.133 0.867 41 H 0.100 0.900 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.271 0.729 46 H 0.135 0.865 47 H 0.272 0.728 48 H -0.196 1.196 49 H -0.199 1.199 50 H 0.215 0.785 51 H 0.181 0.819 52 H 0.122 0.878 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.986 -2.000 -3.183 4.801 hybrid contribution 1.066 0.918 0.611 1.534 sum -1.921 -1.081 -2.572 3.387 Atomic orbital electron populations 1.22474 0.94113 1.03681 1.03467 1.22350 0.94409 0.92585 0.81535 1.21897 1.02498 0.90890 1.04228 1.22474 1.01667 1.02257 0.97309 1.86311 1.71598 1.23327 1.47323 1.18337 0.78633 0.80757 0.82437 1.90899 1.42178 1.70901 1.44447 1.44423 1.54790 1.12207 1.22904 1.21956 0.97791 0.78968 0.99308 0.89277 1.23367 0.98230 1.01327 0.93457 1.22550 0.96243 0.99466 0.94055 0.88742 1.21692 1.01453 0.98152 0.93228 1.21340 1.00409 0.89343 0.89780 1.54900 1.85468 1.16603 1.27073 1.00540 0.72413 0.72111 0.72939 1.93538 1.60695 1.62912 1.81562 1.93519 1.86708 1.43985 1.72567 1.29994 1.22688 1.06176 1.18501 1.24083 0.95660 0.99576 0.98704 1.24632 1.04182 0.89579 1.00530 1.86323 1.47578 1.36838 1.65275 0.93480 0.71509 0.88769 0.78420 1.84533 1.11025 1.01789 1.64637 1.26186 0.95708 1.03750 1.08507 1.19978 0.98589 0.93137 1.00490 1.23569 0.96728 1.02727 0.95420 0.92074 0.89419 0.91781 0.91130 0.88267 0.91265 0.91755 0.89425 0.91894 0.74749 0.90002 0.86713 0.90005 0.89151 0.92197 0.91472 0.72890 0.86514 0.72840 1.19599 1.19949 0.78503 0.81905 0.87759 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.68 8.37 71.98 0.60 -0.07 16 2 C 0.13 0.43 1.13 -10.80 -0.01 0.42 16 3 C -0.14 0.23 8.85 71.98 0.64 0.86 16 4 C -0.18 -0.63 8.37 71.98 0.60 -0.02 16 5 O -0.37 -2.25 9.94 -55.43 -0.55 -2.80 16 6 C 0.64 4.59 8.06 129.79 1.05 5.63 16 7 O -0.59 -7.33 11.48 19.80 0.23 -7.11 16 8 N -0.68 -0.42 5.27 -567.60 -2.99 -3.41 16 9 C 0.12 -0.23 4.32 45.52 0.20 -0.03 16 10 H 0.09 0.18 7.46 -2.39 -0.02 0.16 16 11 C -0.13 0.92 7.39 31.12 0.23 1.15 16 12 C -0.10 0.73 3.53 -10.27 -0.04 0.70 16 13 H 0.09 -0.65 8.13 -2.39 -0.02 -0.67 16 14 C -0.11 0.85 5.20 30.59 0.16 1.01 16 15 C 0.12 -0.43 6.21 86.38 0.54 0.11 16 16 N -1.07 2.62 4.15 -187.48 -0.78 1.84 16 17 S 2.73 15.24 4.92 -56.49 -0.28 14.96 16 18 O -1.00 -11.85 16.83 -128.00 -2.15 -14.00 16 19 O -0.98 -9.10 16.61 -122.50 -2.03 -11.13 16 20 C -0.67 -3.48 5.75 21.22 0.12 -3.36 16 21 C -0.06 -0.20 5.77 24.59 0.14 -0.06 16 22 C -0.08 0.24 2.11 71.24 0.15 0.39 16 23 O -0.55 4.20 8.01 -138.19 -1.11 3.09 16 24 Si 0.78 -4.03 31.12 68.60 2.13 -1.89 16 25 S 0.12 0.36 20.77 -56.49 -1.17 -0.81 16 26 C -0.21 -0.42 11.23 66.72 0.75 0.33 16 27 C -0.09 -0.42 9.70 21.22 0.21 -0.22 16 28 C -0.15 0.57 7.43 31.12 0.23 0.80 16 29 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.06 0.58 5.88 -2.38 -0.01 0.57 16 32 H 0.07 -0.14 8.14 -2.38 -0.02 -0.15 16 33 H 0.10 -0.50 8.14 -2.38 -0.02 -0.52 16 34 H 0.07 -0.12 8.14 -2.38 -0.02 -0.14 16 35 H 0.06 0.56 5.88 -2.39 -0.01 0.55 16 36 H 0.09 -0.01 8.14 -2.39 -0.02 -0.02 16 37 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 38 H 0.42 -1.46 8.81 -92.71 -0.82 -2.28 16 39 H 0.08 -0.62 8.14 -2.39 -0.02 -0.64 16 40 H 0.11 -1.10 8.10 -2.39 -0.02 -1.12 16 41 H 0.08 -0.70 8.14 -2.39 -0.02 -0.72 16 42 H 0.09 -0.94 7.84 -2.39 -0.02 -0.96 16 43 H 0.06 -0.19 8.14 -2.39 -0.02 -0.20 16 44 H 0.07 -0.11 7.75 -2.39 -0.02 -0.13 16 45 H 0.43 -3.17 7.55 -96.75 -0.73 -3.90 16 46 H 0.12 -0.50 7.88 -2.39 -0.02 -0.52 16 47 H 0.42 -7.63 8.74 -74.06 -0.65 -8.28 16 48 H -0.27 -0.05 7.11 99.48 0.71 0.66 16 49 H -0.27 -0.29 7.11 99.48 0.71 0.42 16 50 H 0.20 -0.69 8.06 -2.91 -0.02 -0.72 16 51 H 0.16 0.49 7.74 -2.91 -0.02 0.47 16 52 H 0.10 -0.58 7.90 -2.39 -0.02 -0.60 16 53 H 0.06 -0.03 8.14 -2.38 -0.02 -0.05 16 Total: 0.00 -27.75 444.00 -4.34 -32.09 By element: Atomic # 1 Polarization: -17.28 SS G_CDS: -1.20 Total: -18.47 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 5.56 Total: 7.65 kcal Atomic # 7 Polarization: 2.20 SS G_CDS: -3.77 Total: -1.57 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -5.62 Total: -31.94 kcal Atomic # 14 Polarization: -4.03 SS G_CDS: 2.13 Total: -1.89 kcal Atomic # 16 Polarization: 15.60 SS G_CDS: -1.45 Total: 14.15 kcal Total: -27.75 -4.34 -32.09 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16498398_14772022.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.389 kcal (2) G-P(sol) polarization free energy of solvation -27.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds