Wall clock time and date at job start Mon Mar 8 2021 11:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47159 * 2 1 4 4 C 1.53000 * 109.47284 * 240.00193 * 2 1 3 5 5 O 1.45194 * 109.47039 * 120.00091 * 2 1 3 6 6 C 1.34638 * 117.00320 * 60.00284 * 5 2 1 7 7 O 1.21516 * 119.99375 * 359.97438 * 6 5 2 8 8 N 1.34774 * 120.00641 * 179.97438 * 6 5 2 9 9 C 1.46496 * 120.00099 * 179.97438 * 8 6 5 10 10 H 1.08994 * 112.91109 * 23.75176 * 9 8 6 11 11 C 1.53787 * 113.61210 * 155.00440 * 9 8 6 12 12 C 1.53778 * 87.08035 * 89.11438 * 11 9 8 13 13 H 1.08999 * 113.61280 * 270.79710 * 12 11 9 14 14 C 1.53001 * 113.61263 * 139.98349 * 12 11 9 15 15 C 1.52994 * 109.47270 * 175.00019 * 14 12 11 16 16 N 1.46501 * 109.47460 * 179.97438 * 15 14 12 17 17 S 1.65602 * 120.00226 * 164.99669 * 16 15 14 18 18 O 1.42103 * 106.40162 * 178.53853 * 17 16 15 19 19 O 1.42095 * 106.39951 * 311.45847 * 17 16 15 20 20 C 1.76194 * 107.21854 * 64.99997 * 17 16 15 21 21 C 1.33388 * 122.54352 * 269.71163 * 20 17 16 22 22 S 1.75876 * 109.59895 * 179.90430 * 21 20 17 23 23 C 1.75887 * 90.96975 * 0.29663 * 22 21 20 24 24 C 1.50697 * 125.20282 * 179.86238 * 23 22 21 25 25 O 1.42904 * 109.47005 * 244.96250 * 24 23 22 26 26 Si 1.86301 * 109.47535 * 4.96307 * 24 23 22 27 27 C 1.33386 * 109.59030 * 359.83387 * 23 22 21 28 28 C 1.53778 * 87.08449 * 25.43264 * 12 11 9 29 29 H 1.08996 * 109.47601 * 299.99573 * 1 2 3 30 30 H 1.09008 * 109.47003 * 59.99972 * 1 2 3 31 31 H 1.09001 * 109.47089 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47346 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47568 * 300.00538 * 3 2 1 34 34 H 1.09002 * 109.46886 * 59.99891 * 3 2 1 35 35 H 1.09001 * 109.47166 * 300.00086 * 4 2 1 36 36 H 1.09008 * 109.47235 * 59.99977 * 4 2 1 37 37 H 1.09005 * 109.47250 * 179.97438 * 4 2 1 38 38 H 0.97002 * 119.99411 * 0.02562 * 8 6 5 39 39 H 1.08998 * 113.61103 * 203.66698 * 11 9 8 40 40 H 1.08999 * 113.61167 * 334.56160 * 11 9 8 41 41 H 1.09008 * 109.46870 * 294.99672 * 14 12 11 42 42 H 1.09000 * 109.47055 * 54.99500 * 14 12 11 43 43 H 1.09008 * 109.46890 * 299.99640 * 15 14 12 44 44 H 1.09000 * 109.47506 * 59.99756 * 15 14 12 45 45 H 0.97001 * 119.99744 * 344.99369 * 16 15 14 46 46 H 1.08010 * 125.19774 * 0.02562 * 21 20 17 47 47 H 1.09002 * 109.47182 * 124.96594 * 24 23 22 48 48 H 0.96701 * 114.00312 * 60.00248 * 25 24 23 49 49 H 1.48500 * 109.99568 * 58.67628 * 26 24 23 50 50 H 1.48499 * 110.00215 * 179.97438 * 26 24 23 51 51 H 1.08002 * 122.53540 * 179.97438 * 27 23 22 52 52 H 1.08993 * 113.61229 * 220.02023 * 28 12 11 53 53 H 1.09000 * 113.61263 * 89.11673 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0139 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5039 8 7 2.0680 -2.6658 2.4165 9 6 1.6739 -4.0669 2.5829 10 1 1.4197 -4.5511 1.6401 11 6 2.6474 -4.8817 3.4510 12 6 1.8075 -4.4459 4.6632 13 1 2.1381 -3.5078 5.1089 14 6 1.6020 -5.5550 5.6970 15 6 0.8660 -4.9889 6.9129 16 7 0.6687 -6.0509 7.9025 17 16 0.2416 -5.6666 9.4557 18 8 0.0956 -6.8988 10.1483 19 8 1.1311 -4.6405 9.8741 20 6 -1.3619 -4.9392 9.3909 21 6 -1.5490 -3.6264 9.2468 22 16 -3.2722 -3.2753 9.2222 23 6 -3.6529 -4.9806 9.4237 24 6 -5.0430 -5.5565 9.5066 25 8 -5.2481 -6.1213 10.8032 26 14 -6.2930 -4.2068 9.2124 27 6 -2.5229 -5.6862 9.4914 28 6 0.6283 -4.2855 3.6892 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2073 -2.1393 37 1 3.1301 -0.7208 -1.2495 38 1 2.6276 -2.2369 3.0828 39 1 2.6120 -5.9538 3.2579 40 1 3.6627 -4.4852 3.4580 41 1 1.0111 -6.3579 5.2559 42 1 2.5709 -5.9457 6.0081 43 1 1.4569 -4.1860 7.3539 44 1 -0.1028 -4.5982 6.6018 45 1 0.7882 -6.9793 7.6480 46 1 -0.7625 -2.8916 9.1568 47 1 -5.1607 -6.3321 8.7498 48 1 -5.1586 -5.4867 11.5273 49 1 -6.0701 -3.5899 7.8801 50 1 -7.6681 -4.7621 9.2909 51 1 -2.5146 -6.7590 9.6155 52 1 0.0137 -3.4078 3.8886 53 1 0.0409 -5.1947 3.5614 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16498398_15065232.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:05:59 Heat of formation + Delta-G solvation = -132.715420 kcal Electronic energy + Delta-G solvation = -35853.103432 eV Core-core repulsion = 30946.073800 eV Total energy + Delta-G solvation = -4907.029633 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 419.136 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.94333 -40.46756 -39.48523 -38.42710 -38.03360 -37.55246 -37.02760 -36.70385 -35.33817 -34.07189 -31.83565 -30.88534 -28.39173 -28.32164 -27.21362 -26.67552 -25.76735 -24.92439 -23.80188 -22.66821 -21.45020 -21.15240 -20.43686 -19.93511 -19.30243 -19.13867 -18.51354 -17.91258 -17.67037 -17.59453 -17.23609 -17.10057 -16.61276 -16.35083 -16.05768 -15.88550 -15.68696 -15.45603 -15.40651 -15.10516 -14.93904 -14.72405 -14.38788 -14.30398 -14.13452 -13.96159 -13.92296 -13.46916 -13.41209 -13.35066 -13.31660 -13.22686 -13.16416 -12.94181 -12.93319 -12.88824 -12.69524 -12.57261 -12.45862 -12.34328 -12.31603 -12.19292 -11.78237 -11.66363 -11.42409 -11.31667 -11.14623 -11.06823 -10.68993 -10.47450 -10.19611 -10.15502 -9.83195 -5.19988 -0.77311 -0.47774 0.34229 0.58899 0.96443 1.13158 1.16784 1.52613 1.71725 1.82959 2.06653 2.68162 3.11505 3.21666 3.40965 3.53324 3.54892 3.65498 3.72089 3.77099 3.88161 3.88805 3.90230 3.92328 4.03561 4.20358 4.34725 4.35935 4.45715 4.49631 4.58380 4.58856 4.60974 4.65325 4.71173 4.74274 4.81237 4.84908 4.85579 4.88159 4.90209 4.92133 4.99024 5.03541 5.07796 5.11518 5.17275 5.24666 5.27857 5.31976 5.37015 5.53005 5.66241 6.04190 6.38350 6.61710 7.32789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.128 3.872 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.369 6.369 6 C 0.645 3.355 7 O -0.594 6.594 8 N -0.682 5.682 9 C 0.124 3.876 10 H 0.086 0.914 11 C -0.130 4.130 12 C -0.101 4.101 13 H 0.103 0.897 14 C -0.113 4.113 15 C 0.106 3.894 16 N -1.106 6.106 17 S 2.727 3.273 18 O -0.990 6.990 19 O -0.980 6.980 20 C -0.693 4.693 21 C -0.087 4.087 22 S 0.191 5.809 23 C -0.236 4.236 24 C -0.034 4.034 25 O -0.550 6.550 26 Si 0.732 3.268 27 C -0.057 4.057 28 C -0.146 4.146 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.417 0.583 39 H 0.109 0.891 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.428 0.572 46 H 0.206 0.794 47 H 0.123 0.877 48 H 0.397 0.603 49 H -0.260 1.260 50 H -0.271 1.271 51 H 0.149 0.851 52 H 0.065 0.935 53 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.471 4.938 -1.624 5.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.092 3.908 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.284 6.284 6 C 0.398 3.602 7 O -0.485 6.485 8 N -0.342 5.342 9 C 0.020 3.980 10 H 0.104 0.896 11 C -0.168 4.168 12 C -0.120 4.120 13 H 0.121 0.879 14 C -0.152 4.152 15 C -0.019 4.019 16 N -0.869 5.869 17 S 2.815 3.185 18 O -0.980 6.980 19 O -0.970 6.970 20 C -0.794 4.794 21 C -0.226 4.226 22 S 0.455 5.545 23 C -0.354 4.354 24 C -0.147 4.147 25 O -0.358 6.358 26 Si 0.634 3.366 27 C -0.086 4.086 28 C -0.185 4.185 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.254 0.746 39 H 0.128 0.872 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.265 0.735 46 H 0.223 0.777 47 H 0.140 0.860 48 H 0.247 0.753 49 H -0.185 1.185 50 H -0.196 1.196 51 H 0.167 0.833 52 H 0.083 0.917 53 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.046 5.893 -2.276 6.403 hybrid contribution 0.640 -1.888 -0.292 2.015 sum -0.406 4.005 -2.568 4.775 Atomic orbital electron populations 1.22471 0.94052 1.03666 1.03512 1.22340 0.94442 0.92570 0.81486 1.21894 1.02474 0.90864 1.04263 1.22478 1.01644 1.02233 0.97400 1.86308 1.71570 1.23278 1.47251 1.18348 0.78632 0.80774 0.82428 1.90907 1.42241 1.70928 1.44455 1.44382 1.54784 1.12041 1.22964 1.21925 0.97814 0.79044 0.99267 0.89591 1.23377 0.98429 1.01127 0.93832 1.22550 0.96161 0.99508 0.93773 0.87875 1.21737 1.01557 0.98265 0.93616 1.21580 1.01586 0.89354 0.89396 1.55265 1.85624 1.17136 1.28913 1.00745 0.72941 0.72302 0.72475 1.93566 1.87229 1.45177 1.72010 1.93566 1.62460 1.60262 1.80701 1.29830 1.22994 1.03729 1.22851 1.26261 1.02090 0.98052 0.96160 1.84227 0.99055 1.04695 1.66547 1.25179 1.00316 0.97212 1.12716 1.24622 0.95291 1.05584 0.89182 1.86511 1.93240 1.40972 1.15087 0.94171 0.77327 0.80463 0.84638 1.19655 0.89311 1.01479 0.98168 1.23575 0.96748 1.02905 0.95284 0.91878 0.89535 0.91817 0.91170 0.88355 0.91118 0.91823 0.89506 0.91937 0.74612 0.87241 0.89916 0.89902 0.90045 0.89866 0.90596 0.73465 0.77715 0.86015 0.75317 1.18513 1.19585 0.83344 0.91668 0.88116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.46 8.37 71.98 0.60 0.14 16 2 C 0.13 0.29 1.13 -10.79 -0.01 0.28 16 3 C -0.14 0.38 8.85 71.98 0.64 1.01 16 4 C -0.18 -0.50 8.37 71.98 0.60 0.10 16 5 O -0.37 -1.70 9.94 -55.48 -0.55 -2.25 16 6 C 0.64 3.67 8.06 129.79 1.05 4.71 16 7 O -0.59 -6.73 11.48 19.79 0.23 -6.50 16 8 N -0.68 0.79 5.27 -567.60 -2.99 -2.20 16 9 C 0.12 -0.39 4.32 45.52 0.20 -0.19 16 10 H 0.09 0.12 7.47 -2.39 -0.02 0.10 16 11 C -0.13 1.08 7.39 31.12 0.23 1.31 16 12 C -0.10 0.95 3.53 -10.27 -0.04 0.91 16 13 H 0.10 -1.09 8.13 -2.39 -0.02 -1.11 16 14 C -0.11 1.11 5.19 30.59 0.16 1.27 16 15 C 0.11 -0.82 6.21 86.38 0.54 -0.29 16 16 N -1.11 5.47 6.00 -187.49 -1.12 4.34 16 17 S 2.73 5.25 5.80 -56.49 -0.33 4.92 16 18 O -0.99 -9.20 17.63 -128.00 -2.26 -11.46 16 19 O -0.98 -6.60 17.11 -128.00 -2.19 -8.79 16 20 C -0.69 -0.03 5.86 21.22 0.12 0.10 16 21 C -0.09 0.28 10.70 66.72 0.71 1.00 16 22 S 0.19 -0.80 20.60 -56.49 -1.16 -1.96 16 23 C -0.24 0.20 5.70 24.59 0.14 0.34 16 24 C -0.03 0.05 2.96 71.23 0.21 0.26 16 25 O -0.55 -0.06 12.88 -148.98 -1.92 -1.98 16 26 Si 0.73 -2.39 30.98 68.60 2.13 -0.26 16 27 C -0.06 -0.08 9.59 21.22 0.20 0.12 16 28 C -0.15 0.90 7.43 31.12 0.23 1.13 16 29 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 30 H 0.09 -0.06 8.14 -2.38 -0.02 -0.08 16 31 H 0.06 0.51 5.88 -2.39 -0.01 0.49 16 32 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 33 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 34 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 35 H 0.06 0.52 5.88 -2.39 -0.01 0.50 16 36 H 0.09 -0.05 8.14 -2.38 -0.02 -0.07 16 37 H 0.06 0.13 8.14 -2.38 -0.02 0.11 16 38 H 0.42 -2.37 8.81 -92.71 -0.82 -3.19 16 39 H 0.11 -1.06 8.10 -2.39 -0.02 -1.08 16 40 H 0.08 -0.72 8.14 -2.39 -0.02 -0.74 16 41 H 0.08 -0.90 7.84 -2.38 -0.02 -0.92 16 42 H 0.08 -0.80 8.14 -2.39 -0.02 -0.82 16 43 H 0.08 -0.64 7.75 -2.38 -0.02 -0.65 16 44 H 0.08 -0.73 8.14 -2.39 -0.02 -0.75 16 45 H 0.43 -3.37 8.65 -96.74 -0.84 -4.21 16 46 H 0.21 -1.64 8.00 -2.91 -0.02 -1.66 16 47 H 0.12 -0.15 7.96 -2.39 -0.02 -0.17 16 48 H 0.40 -3.07 8.70 -74.06 -0.64 -3.72 16 49 H -0.26 -0.07 7.11 99.48 0.71 0.63 16 50 H -0.27 -0.87 7.11 99.48 0.71 -0.16 16 51 H 0.15 0.36 7.97 -2.91 -0.02 0.34 16 52 H 0.06 -0.26 8.14 -2.39 -0.02 -0.28 16 53 H 0.10 -0.71 7.90 -2.39 -0.02 -0.73 16 Total: 0.00 -27.17 454.16 -5.89 -33.05 By element: Atomic # 1 Polarization: -17.80 SS G_CDS: -1.30 Total: -19.10 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: 5.59 Total: 12.19 kcal Atomic # 7 Polarization: 6.25 SS G_CDS: -4.11 Total: 2.14 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -6.69 Total: -30.98 kcal Atomic # 14 Polarization: -2.39 SS G_CDS: 2.13 Total: -0.26 kcal Atomic # 16 Polarization: 4.45 SS G_CDS: -1.49 Total: 2.96 kcal Total: -27.17 -5.89 -33.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16498398_15065232.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.663 kcal (2) G-P(sol) polarization free energy of solvation -27.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds