Wall clock time and date at job start Mon Mar 8 2021 11:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47218 * 2 1 4 4 C 1.53003 * 109.46543 * 239.99977 * 2 1 3 5 5 O 1.45202 * 109.47351 * 120.00344 * 2 1 3 6 6 C 1.34635 * 116.99897 * 59.99308 * 5 2 1 7 7 O 1.21505 * 120.00123 * 0.02562 * 6 5 2 8 8 N 1.34781 * 119.99641 * 179.97438 * 6 5 2 9 9 C 1.46499 * 119.99686 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.46792 * 180.02562 * 9 8 6 11 11 F 1.39896 * 112.85322 * 316.19512 * 10 9 8 12 12 C 1.53782 * 113.61558 * 87.50266 * 10 9 8 13 13 C 1.53783 * 87.08197 * 139.97611 * 12 10 9 14 14 H 1.09006 * 113.68583 * 89.13079 * 13 12 10 15 15 C 1.52999 * 113.61690 * 220.01627 * 13 12 10 16 16 N 1.46496 * 109.47569 * 272.50156 * 15 13 12 17 17 S 1.65599 * 120.00141 * 165.00083 * 16 15 13 18 18 O 1.42106 * 106.40227 * 311.45608 * 17 16 15 19 19 O 1.42100 * 106.40324 * 178.54122 * 17 16 15 20 20 C 1.76199 * 107.21905 * 64.99953 * 17 16 15 21 21 C 1.33387 * 125.20145 * 179.71622 * 20 17 16 22 22 C 1.50700 * 122.54190 * 0.02562 * 21 20 17 23 23 O 1.42897 * 109.47296 * 284.99733 * 22 21 20 24 24 Si 1.86298 * 109.47303 * 164.99573 * 22 21 20 25 25 C 1.38426 * 114.92191 * 179.85684 * 21 20 17 26 26 C 1.33390 * 114.91723 * 0.43729 * 25 21 20 27 27 S 1.75878 * 125.20221 * 0.02562 * 20 17 16 28 28 C 1.53777 * 87.08179 * 334.56885 * 13 12 10 29 29 H 1.09001 * 109.46629 * 300.00280 * 1 2 3 30 30 H 1.09003 * 109.47278 * 59.99374 * 1 2 3 31 31 H 1.08998 * 109.46978 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47250 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47148 * 299.99819 * 3 2 1 34 34 H 1.08997 * 109.47093 * 60.00409 * 3 2 1 35 35 H 1.08998 * 109.47281 * 299.99566 * 4 2 1 36 36 H 1.09004 * 109.47200 * 60.00719 * 4 2 1 37 37 H 1.09007 * 109.46831 * 179.97438 * 4 2 1 38 38 H 0.96998 * 120.00121 * 0.02562 * 8 6 5 39 39 H 1.08993 * 109.47180 * 60.00148 * 9 8 6 40 40 H 1.09001 * 109.47426 * 300.00173 * 9 8 6 41 41 H 1.09000 * 113.61261 * 25.43324 * 12 10 9 42 42 H 1.08994 * 113.61818 * 254.52697 * 12 10 9 43 43 H 1.09005 * 109.47078 * 152.50114 * 15 13 12 44 44 H 1.09003 * 109.47008 * 32.50064 * 15 13 12 45 45 H 0.97005 * 119.99711 * 344.99738 * 16 15 13 46 46 H 1.09003 * 109.47160 * 44.99851 * 22 21 20 47 47 H 0.96699 * 113.99686 * 300.00071 * 23 22 21 48 48 H 1.48498 * 109.99863 * 58.68255 * 24 22 21 49 49 H 1.48502 * 110.00327 * 180.02562 * 24 22 21 50 50 H 1.07994 * 122.54538 * 180.19727 * 25 21 20 51 51 H 1.07998 * 125.20191 * 179.78694 * 26 25 21 52 52 H 1.09002 * 113.61088 * 139.98005 * 28 13 12 53 53 H 1.08995 * 113.61405 * 270.87632 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0141 -0.6846 1.1855 6 6 1.6522 -1.9723 1.3383 7 8 0.9515 -2.5096 0.5036 8 7 2.0681 -2.6658 2.4166 9 6 1.6749 -4.0672 2.5825 10 6 2.2749 -4.6151 3.8788 11 9 3.6107 -4.2408 4.0600 12 6 1.3930 -4.3753 5.1156 13 6 1.7833 -5.7913 5.5712 14 1 2.6892 -5.8223 6.1767 15 6 0.6262 -6.5760 6.1927 16 7 0.5546 -6.2867 7.6270 17 16 -0.8024 -6.6899 8.4862 18 8 -1.9094 -6.2036 7.7395 19 8 -0.5498 -6.3165 9.8338 20 6 -0.9260 -8.4475 8.4717 21 6 -1.8883 -9.1556 9.0648 22 6 -3.0111 -8.5108 9.8360 23 8 -2.5203 -8.0509 11.0968 24 14 -4.3683 -9.7561 10.1147 25 6 -1.7796 -10.5274 8.9151 26 6 -0.7239 -10.9337 8.2082 27 16 0.2050 -9.5368 7.6796 28 6 2.0225 -6.1177 4.0876 29 1 -0.3632 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1393 37 1 3.1300 -0.7209 -1.2496 38 1 2.6278 -2.2369 3.0827 39 1 2.0412 -4.6499 1.7374 40 1 0.5880 -4.1367 2.6279 41 1 0.3336 -4.2683 4.8823 42 1 1.7647 -3.5877 5.7710 43 1 0.7904 -7.6434 6.0450 44 1 -0.3091 -6.2829 5.7158 45 1 1.3021 -5.8591 8.0734 46 1 -3.4034 -7.6666 9.2689 47 1 -2.1553 -8.7505 11.6556 48 1 -3.8385 -10.9266 10.8593 49 1 -5.4819 -9.1324 10.8738 50 1 -2.4932 -11.2167 9.3417 51 1 -0.4775 -11.9630 7.9931 52 1 2.9026 -6.7367 3.9132 53 1 1.1353 -6.4870 3.5733 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16499944_13652106.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:37:35 Heat of formation + Delta-G solvation = -169.532378 kcal Electronic energy + Delta-G solvation = -38987.488559 eV Core-core repulsion = 33609.408448 eV Total energy + Delta-G solvation = -5378.080112 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 437.127 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -48.84112 -41.83523 -40.10647 -39.95476 -38.47378 -38.33805 -37.27735 -37.04401 -36.29373 -35.51983 -34.75051 -31.44883 -29.98844 -28.37965 -28.31994 -28.09962 -27.20882 -26.85533 -24.34983 -23.59105 -22.38567 -21.73219 -21.23781 -20.68842 -19.96247 -19.65738 -19.34968 -18.70301 -18.03996 -17.77392 -17.53990 -17.41518 -17.01481 -16.82456 -16.64500 -16.35829 -16.25444 -16.12462 -15.97071 -15.76973 -15.46047 -15.39414 -15.29779 -15.08021 -14.55866 -14.46135 -14.21460 -14.04931 -14.04197 -13.90668 -13.61689 -13.39656 -13.36490 -13.33921 -13.24684 -13.17484 -13.10603 -12.93294 -12.88884 -12.78561 -12.55560 -12.51162 -12.37882 -12.35932 -12.20343 -11.96127 -11.60903 -11.47985 -11.42249 -11.28076 -11.15594 -10.80209 -10.63313 -10.39235 -10.32271 -9.59868 -4.98611 -0.80727 -0.65326 0.23331 0.66501 1.08687 1.14434 1.26613 1.53110 1.69291 1.87034 1.90887 2.50832 2.96611 3.12441 3.19469 3.21681 3.24735 3.41579 3.46161 3.53101 3.60761 3.72410 3.77787 3.92703 3.97652 4.01547 4.13999 4.22969 4.30404 4.36009 4.41150 4.46612 4.56736 4.60190 4.63345 4.71137 4.71717 4.73204 4.75158 4.77574 4.83626 4.86009 4.89794 4.91057 4.96277 5.02396 5.05687 5.09226 5.18211 5.25779 5.31759 5.41537 5.53232 5.91916 6.26733 6.35822 7.25087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.126 3.874 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.646 3.354 7 O -0.590 6.590 8 N -0.703 5.703 9 C 0.128 3.872 10 C 0.079 3.921 11 F -0.196 7.196 12 C -0.156 4.156 13 C -0.107 4.107 14 H 0.115 0.885 15 C 0.114 3.886 16 N -1.107 6.107 17 S 2.724 3.276 18 O -0.978 6.978 19 O -0.973 6.973 20 C -0.795 4.795 21 C 0.000 4.000 22 C -0.133 4.133 23 O -0.536 6.536 24 Si 0.801 3.199 25 C -0.176 4.176 26 C -0.152 4.152 27 S 0.239 5.761 28 C -0.132 4.132 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.415 0.585 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.113 0.887 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.431 0.569 46 H 0.111 0.889 47 H 0.390 0.610 48 H -0.251 1.251 49 H -0.296 1.296 50 H 0.175 0.825 51 H 0.212 0.788 52 H 0.100 0.900 53 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.583 -6.569 -3.444 7.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.090 3.910 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.399 3.601 7 O -0.481 6.481 8 N -0.364 5.364 9 C 0.005 3.995 10 C 0.060 3.940 11 F -0.176 7.176 12 C -0.193 4.193 13 C -0.127 4.127 14 H 0.133 0.867 15 C -0.011 4.011 16 N -0.873 5.873 17 S 2.811 3.189 18 O -0.967 6.967 19 O -0.963 6.963 20 C -0.997 4.997 21 C -0.019 4.019 22 C -0.242 4.242 23 O -0.344 6.344 24 Si 0.700 3.300 25 C -0.205 4.205 26 C -0.289 4.289 27 S 0.505 5.495 28 C -0.171 4.171 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.118 0.882 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.080 0.920 38 H 0.251 0.749 39 H 0.100 0.900 40 H 0.118 0.882 41 H 0.131 0.869 42 H 0.103 0.897 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.269 0.731 46 H 0.129 0.871 47 H 0.240 0.760 48 H -0.176 1.176 49 H -0.224 1.224 50 H 0.192 0.808 51 H 0.228 0.772 52 H 0.119 0.881 53 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.267 -5.968 -4.118 7.597 hybrid contribution 0.450 -0.008 2.109 2.157 sum 2.716 -5.976 -2.009 6.865 Atomic orbital electron populations 1.22474 0.93858 1.03807 1.03546 1.22388 0.94603 0.92561 0.81465 1.21897 1.02424 0.90931 1.04270 1.22476 1.01593 1.02309 0.97316 1.86317 1.71535 1.23277 1.47407 1.18254 0.78728 0.80841 0.82283 1.90908 1.42152 1.70964 1.44057 1.44569 1.55497 1.12716 1.23578 1.21964 1.01464 0.78938 0.97140 1.22170 0.77885 0.98763 0.95143 1.92862 1.35870 1.92621 1.96266 1.23897 1.01247 0.98600 0.95589 1.22704 0.98679 0.94830 0.96521 0.86724 1.21701 1.00583 1.00748 0.78067 1.55296 1.36507 1.76481 1.18984 1.00834 0.72996 0.72691 0.72362 1.93573 1.51866 1.78284 1.73018 1.93610 1.84886 1.81992 1.35794 1.35506 1.12310 1.30123 1.21773 1.19102 0.94191 0.94433 0.94125 1.25784 1.02540 1.09595 0.86244 1.86740 1.81452 1.38566 1.27644 0.93611 0.73910 0.74837 0.87595 1.20468 1.01770 0.93870 1.04377 1.26642 0.97428 1.04967 0.99896 1.83851 1.23425 0.93524 1.48705 1.23636 1.05758 0.92661 0.95016 0.92007 0.89369 0.91602 0.91266 0.88192 0.91246 0.91644 0.89341 0.92043 0.74893 0.90041 0.88228 0.86902 0.89706 0.89466 0.89170 0.73081 0.87089 0.76009 1.17631 1.22394 0.80783 0.77164 0.88146 0.85359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.60 8.37 71.98 0.60 0.00 16 2 C 0.13 0.43 1.13 -10.79 -0.01 0.42 16 3 C -0.14 0.20 8.85 71.98 0.64 0.84 16 4 C -0.18 -0.61 8.37 71.98 0.60 -0.01 16 5 O -0.37 -2.38 9.94 -55.45 -0.55 -2.93 16 6 C 0.65 4.58 8.06 129.79 1.05 5.62 16 7 O -0.59 -6.76 11.88 19.83 0.24 -6.52 16 8 N -0.70 -0.94 5.45 -590.87 -3.22 -4.17 16 9 C 0.13 -0.35 5.42 86.38 0.47 0.12 16 10 C 0.08 -0.45 1.74 -10.27 -0.02 -0.46 16 11 F -0.20 0.16 16.58 44.97 0.75 0.90 16 12 C -0.16 1.05 7.08 31.12 0.22 1.27 16 13 C -0.11 0.96 3.77 -10.27 -0.04 0.92 16 14 H 0.11 -1.12 8.12 -2.38 -0.02 -1.13 16 15 C 0.11 -0.83 5.81 86.38 0.50 -0.33 16 16 N -1.11 3.58 5.81 -187.49 -1.09 2.49 16 17 S 2.72 15.34 5.07 -56.49 -0.29 15.06 16 18 O -0.98 -10.51 16.99 -128.00 -2.17 -12.69 16 19 O -0.97 -12.74 17.41 -125.53 -2.19 -14.93 16 20 C -0.79 -1.56 6.46 66.72 0.43 -1.13 16 21 C 0.00 0.00 5.13 -20.92 -0.11 -0.11 16 22 C -0.13 -0.52 2.33 71.24 0.17 -0.35 16 23 O -0.54 -4.10 12.27 -147.81 -1.81 -5.91 16 24 Si 0.80 -1.61 30.45 68.60 2.09 0.48 16 25 C -0.18 0.76 8.74 21.22 0.19 0.94 16 26 C -0.15 1.12 11.23 66.72 0.75 1.87 16 27 S 0.24 -1.29 21.09 -56.49 -1.19 -2.48 16 28 C -0.13 1.34 7.10 31.12 0.22 1.56 16 29 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.07 0.54 5.88 -2.39 -0.01 0.53 16 32 H 0.07 -0.10 8.14 -2.38 -0.02 -0.12 16 33 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 34 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 35 H 0.06 0.55 5.88 -2.39 -0.01 0.53 16 36 H 0.09 -0.02 8.14 -2.38 -0.02 -0.04 16 37 H 0.06 0.18 8.14 -2.38 -0.02 0.16 16 38 H 0.41 -0.36 8.14 -92.71 -0.75 -1.11 16 39 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 40 H 0.10 -0.38 7.84 -2.39 -0.02 -0.40 16 41 H 0.11 -0.83 7.65 -2.39 -0.02 -0.85 16 42 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 43 H 0.09 -0.94 6.25 -2.38 -0.01 -0.95 16 44 H 0.09 -0.61 7.45 -2.39 -0.02 -0.63 16 45 H 0.43 -2.81 8.64 -96.74 -0.84 -3.65 16 46 H 0.11 0.68 7.26 -2.39 -0.02 0.66 16 47 H 0.39 -0.02 8.70 -74.06 -0.64 -0.66 16 48 H -0.25 0.59 6.81 99.48 0.68 1.27 16 49 H -0.30 -1.70 7.11 99.48 0.71 -1.00 16 50 H 0.18 -1.50 5.53 -2.91 -0.02 -1.51 16 51 H 0.21 -3.00 8.06 -2.91 -0.02 -3.02 16 52 H 0.10 -1.09 8.14 -2.39 -0.02 -1.10 16 53 H 0.13 -1.74 8.06 -2.39 -0.02 -1.76 16 Total: 0.00 -30.47 451.34 -5.03 -35.50 By element: Atomic # 1 Polarization: -14.73 SS G_CDS: -1.24 Total: -15.97 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 5.66 Total: 11.16 kcal Atomic # 7 Polarization: 2.63 SS G_CDS: -4.31 Total: -1.68 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -6.49 Total: -42.98 kcal Atomic # 9 Polarization: 0.16 SS G_CDS: 0.75 Total: 0.90 kcal Atomic # 14 Polarization: -1.61 SS G_CDS: 2.09 Total: 0.48 kcal Atomic # 16 Polarization: 14.05 SS G_CDS: -1.48 Total: 12.58 kcal Total: -30.47 -5.03 -35.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16499944_13652106.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.033 kcal (2) G-P(sol) polarization free energy of solvation -30.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds