Wall clock time and date at job start Mon Mar 8 2021 11:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47252 * 2 1 4 4 C 1.53002 * 109.46976 * 239.99796 * 2 1 3 5 5 O 1.45206 * 109.46852 * 119.99935 * 2 1 3 6 6 C 1.34634 * 116.99678 * 59.99573 * 5 2 1 7 7 O 1.21505 * 120.00555 * 0.02562 * 6 5 2 8 8 N 1.34784 * 119.99432 * 179.97438 * 6 5 2 9 9 C 1.46501 * 119.99641 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47134 * 180.02562 * 9 8 6 11 11 F 1.39901 * 112.84587 * 50.33072 * 10 9 8 12 12 C 1.53777 * 113.61360 * 181.52776 * 10 9 8 13 13 C 1.53784 * 87.07826 * 139.97720 * 12 10 9 14 14 H 1.09007 * 113.61362 * 89.20049 * 13 12 10 15 15 C 1.52997 * 113.61748 * 220.01393 * 13 12 10 16 16 N 1.46504 * 109.47276 * 185.00065 * 15 13 12 17 17 S 1.65597 * 119.99772 * 162.45495 * 16 15 13 18 18 O 1.42102 * 106.40409 * 181.89451 * 17 16 15 19 19 O 1.42102 * 106.40150 * 314.80858 * 17 16 15 20 20 C 1.76201 * 107.22217 * 68.35179 * 17 16 15 21 21 C 1.33382 * 122.53844 * 165.99615 * 20 17 16 22 22 C 1.50697 * 125.20672 * 0.03100 * 21 20 17 23 23 O 1.42899 * 109.47142 * 39.22775 * 22 21 20 24 24 Si 1.86301 * 109.47412 * 159.23403 * 22 21 20 25 25 S 1.75891 * 109.59123 * 179.90584 * 21 20 17 26 26 C 1.75889 * 90.96887 * 0.30307 * 25 21 20 27 27 C 1.33386 * 109.59025 * 359.82764 * 26 25 21 28 28 C 1.53776 * 113.61053 * 279.13696 * 10 9 8 29 29 H 1.09006 * 109.47012 * 300.00114 * 1 2 3 30 30 H 1.09001 * 109.46899 * 59.99729 * 1 2 3 31 31 H 1.08996 * 109.47647 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47359 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47389 * 299.99971 * 3 2 1 34 34 H 1.09006 * 109.47205 * 60.00005 * 3 2 1 35 35 H 1.08996 * 109.46913 * 300.00425 * 4 2 1 36 36 H 1.09000 * 109.46981 * 59.99937 * 4 2 1 37 37 H 1.08992 * 109.47039 * 180.02562 * 4 2 1 38 38 H 0.96993 * 120.00143 * 0.02562 * 8 6 5 39 39 H 1.09001 * 109.47492 * 60.00178 * 9 8 6 40 40 H 1.09000 * 109.47378 * 300.00192 * 9 8 6 41 41 H 1.08998 * 113.61388 * 254.52224 * 12 10 9 42 42 H 1.09001 * 113.61320 * 25.43604 * 12 10 9 43 43 H 1.08999 * 109.47332 * 305.00524 * 15 13 12 44 44 H 1.09011 * 109.46652 * 65.00646 * 15 13 12 45 45 H 0.96995 * 119.99775 * 342.45263 * 16 15 13 46 46 H 1.09004 * 109.46906 * 279.22787 * 22 21 20 47 47 H 0.96695 * 113.99890 * 66.06024 * 23 22 21 48 48 H 1.48498 * 110.00165 * 58.67629 * 24 22 21 49 49 H 1.48500 * 110.00035 * 179.97438 * 24 22 21 50 50 H 1.08002 * 125.19816 * 179.86720 * 26 25 21 51 51 H 1.08007 * 122.53405 * 179.97438 * 27 26 25 52 52 H 1.09006 * 113.61771 * 334.56605 * 28 10 9 53 53 H 1.08996 * 113.61687 * 105.46845 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9515 -2.5096 0.5037 8 7 2.0679 -2.6657 2.4168 9 6 1.6746 -4.0671 2.5828 10 6 2.2745 -4.6151 3.8792 11 9 2.0255 -3.7926 4.9832 12 6 1.9504 -6.0973 4.1297 13 6 3.3961 -6.2472 4.6320 14 1 3.5099 -6.0543 5.6988 15 6 4.0671 -7.5489 4.1889 16 7 5.3890 -7.6535 4.8118 17 16 6.1605 -9.1174 4.8758 18 8 7.3811 -8.8977 5.5695 19 8 5.1883 -10.0654 5.2947 20 6 6.5975 -9.5494 3.2244 21 6 7.4625 -10.5250 2.9430 22 6 8.1726 -11.3774 3.9629 23 8 7.2751 -11.6904 5.0300 24 14 8.7544 -12.9537 3.1581 25 16 7.6448 -10.6668 1.1994 26 6 6.5093 -9.3482 0.9434 27 6 6.0737 -8.8981 2.1210 28 6 3.7469 -5.0382 3.7459 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2075 -2.1392 37 1 3.1299 -0.7217 -1.2490 38 1 2.6275 -2.2368 3.0829 39 1 2.0410 -4.6499 1.7377 40 1 0.5877 -4.1366 2.6280 41 1 1.2003 -6.2553 4.9046 42 1 1.7443 -6.6591 3.2186 43 1 3.4534 -8.3963 4.4943 44 1 4.1754 -7.5508 3.1042 45 1 5.8123 -6.8654 5.1866 46 1 9.0304 -10.8329 4.3576 47 1 6.5346 -12.2545 4.7684 48 1 9.6635 -12.6406 2.0264 49 1 9.4569 -13.8029 4.1534 50 1 6.2101 -8.9625 -0.0200 51 1 5.3662 -8.0866 2.2071 52 1 4.0329 -5.3100 2.7297 53 1 4.4450 -4.3425 4.2113 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16499944_14772022.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:37:40 Heat of formation + Delta-G solvation = -167.989140 kcal Electronic energy + Delta-G solvation = -39377.894086 eV Core-core repulsion = 33999.880894 eV Total energy + Delta-G solvation = -5378.013192 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 437.127 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -48.80926 -41.82116 -39.96835 -39.65811 -38.44983 -38.19115 -37.75553 -36.81850 -36.21395 -35.44048 -34.71828 -31.82342 -29.93005 -28.37289 -28.31361 -27.57111 -27.16475 -26.82269 -24.55066 -23.54132 -22.29530 -21.69388 -21.24447 -20.72014 -20.12771 -19.35327 -19.32699 -18.46373 -17.96090 -17.73051 -17.49633 -17.40267 -17.15867 -16.94100 -16.63793 -16.53355 -16.32769 -15.98853 -15.76747 -15.51967 -15.44838 -15.31735 -15.20138 -14.98897 -14.45455 -14.42268 -14.35888 -14.21866 -14.10551 -13.89082 -13.71442 -13.37960 -13.31997 -13.17479 -13.10709 -13.06882 -13.04822 -12.92185 -12.87955 -12.76420 -12.63039 -12.50057 -12.36872 -12.17559 -12.16906 -11.96872 -11.56225 -11.41197 -11.33414 -11.23937 -11.11897 -11.05459 -10.51867 -10.30780 -10.15544 -9.75892 -5.18433 -0.71052 -0.50536 0.34484 0.65936 1.03695 1.10023 1.17511 1.47568 1.71259 1.80217 2.01646 2.72093 2.98070 3.14358 3.16236 3.24307 3.29563 3.30295 3.52047 3.58144 3.65504 3.73131 3.78565 3.93472 3.95348 4.03457 4.12963 4.18283 4.35665 4.38367 4.42855 4.49804 4.59245 4.60938 4.70060 4.72932 4.75560 4.75870 4.80388 4.83405 4.84991 4.86680 4.88232 4.95125 5.00940 5.07388 5.07879 5.17380 5.19560 5.26456 5.32816 5.44864 5.54542 6.02228 6.28805 6.39943 7.26998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.127 3.873 3 C -0.139 4.139 4 C -0.179 4.179 5 O -0.371 6.371 6 C 0.646 3.354 7 O -0.590 6.590 8 N -0.702 5.702 9 C 0.130 3.870 10 C 0.075 3.925 11 F -0.201 7.201 12 C -0.136 4.136 13 C -0.113 4.113 14 H 0.100 0.900 15 C 0.114 3.886 16 N -1.111 6.111 17 S 2.730 3.270 18 O -0.991 6.991 19 O -0.971 6.971 20 C -0.668 4.668 21 C -0.120 4.120 22 C -0.091 4.091 23 O -0.552 6.552 24 Si 0.757 3.243 25 S 0.167 5.833 26 C -0.203 4.203 27 C -0.101 4.101 28 C -0.147 4.147 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.415 0.585 39 H 0.108 0.892 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.133 0.867 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.428 0.572 46 H 0.130 0.870 47 H 0.403 0.597 48 H -0.244 1.244 49 H -0.261 1.261 50 H 0.204 0.796 51 H 0.181 0.819 52 H 0.127 0.873 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.352 0.738 -6.717 6.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.090 3.910 3 C -0.196 4.196 4 C -0.236 4.236 5 O -0.285 6.285 6 C 0.399 3.601 7 O -0.481 6.481 8 N -0.362 5.362 9 C 0.007 3.993 10 C 0.057 3.943 11 F -0.181 7.181 12 C -0.175 4.175 13 C -0.133 4.133 14 H 0.118 0.882 15 C -0.011 4.011 16 N -0.875 5.875 17 S 2.818 3.182 18 O -0.981 6.981 19 O -0.960 6.960 20 C -0.768 4.768 21 C -0.241 4.241 22 C -0.201 4.201 23 O -0.361 6.361 24 Si 0.656 3.344 25 S 0.431 5.569 26 C -0.339 4.339 27 C -0.128 4.128 28 C -0.184 4.184 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.251 0.749 39 H 0.126 0.874 40 H 0.092 0.908 41 H 0.107 0.893 42 H 0.151 0.849 43 H 0.107 0.893 44 H 0.116 0.884 45 H 0.264 0.736 46 H 0.147 0.853 47 H 0.255 0.745 48 H -0.169 1.169 49 H -0.186 1.186 50 H 0.221 0.779 51 H 0.198 0.802 52 H 0.145 0.855 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.295 -1.153 -7.370 7.465 hybrid contribution -0.279 2.282 1.257 2.621 sum 0.016 1.130 -6.112 6.216 Atomic orbital electron populations 1.22481 0.94089 1.03759 1.03451 1.22371 0.94432 0.92568 0.81584 1.21897 1.02484 0.91007 1.04178 1.22463 1.01683 1.02331 0.97101 1.86318 1.71524 1.23325 1.47380 1.18255 0.78683 0.80800 0.82346 1.90910 1.42033 1.70954 1.44205 1.44566 1.55478 1.12774 1.23414 1.21935 1.00933 0.79366 0.97068 1.22227 0.99392 0.90572 0.82133 1.92867 1.95370 1.74382 1.55501 1.23649 0.97097 0.91951 1.04797 1.22725 0.95682 0.93863 1.01009 0.88162 1.21755 0.81624 0.99324 0.98423 1.55350 1.29178 1.27795 1.75175 1.00738 0.72281 0.72391 0.72818 1.93534 1.47107 1.85570 1.71905 1.93529 1.61690 1.60991 1.79836 1.29857 1.12803 1.08651 1.25518 1.25087 0.99644 0.99088 1.00265 1.25395 0.95797 1.08399 0.90499 1.86529 1.41793 1.73300 1.34519 0.93785 0.85491 0.75893 0.79278 1.84491 1.42146 1.33341 0.96953 1.26297 1.02352 1.01419 1.03843 1.20175 1.01790 1.01591 0.89224 1.23901 0.93800 0.97604 1.03097 0.92198 0.89400 0.91624 0.91136 0.88268 0.91405 0.91481 0.89510 0.91829 0.74918 0.87407 0.90760 0.89336 0.84873 0.89330 0.88409 0.73569 0.85257 0.74525 1.16901 1.18610 0.77942 0.80177 0.85503 0.89482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.44 8.37 71.98 0.60 0.16 16 2 C 0.13 0.24 1.13 -10.79 -0.01 0.23 16 3 C -0.14 0.37 8.85 71.98 0.64 1.00 16 4 C -0.18 -0.24 8.37 71.98 0.60 0.36 16 5 O -0.37 -1.71 9.94 -55.43 -0.55 -2.26 16 6 C 0.65 3.22 8.06 129.79 1.05 4.27 16 7 O -0.59 -5.56 11.88 19.82 0.24 -5.32 16 8 N -0.70 0.69 5.48 -590.84 -3.24 -2.55 16 9 C 0.13 -0.63 5.35 86.38 0.46 -0.17 16 10 C 0.08 -0.53 1.64 -10.27 -0.02 -0.55 16 11 F -0.20 0.10 16.86 44.97 0.76 0.86 16 12 C -0.14 1.37 7.10 31.12 0.22 1.59 16 13 C -0.11 1.06 3.77 -10.21 -0.04 1.02 16 14 H 0.10 -0.71 8.14 -2.38 -0.02 -0.72 16 15 C 0.11 -1.00 5.56 86.38 0.48 -0.52 16 16 N -1.11 4.73 5.71 -187.48 -1.07 3.66 16 17 S 2.73 11.87 4.23 -56.49 -0.24 11.63 16 18 O -0.99 -12.34 17.13 -123.47 -2.11 -14.45 16 19 O -0.97 -8.43 16.12 -120.46 -1.94 -10.37 16 20 C -0.67 -0.74 5.71 21.21 0.12 -0.62 16 21 C -0.12 -0.20 5.78 24.59 0.14 -0.06 16 22 C -0.09 -0.26 2.40 71.23 0.17 -0.09 16 23 O -0.55 -2.93 9.71 -125.47 -1.22 -4.15 16 24 Si 0.76 -1.58 31.09 68.60 2.13 0.55 16 25 S 0.17 -0.46 20.86 -56.49 -1.18 -1.64 16 26 C -0.20 1.20 11.23 66.72 0.75 1.95 16 27 C -0.10 0.48 9.52 21.21 0.20 0.68 16 28 C -0.15 1.56 7.09 31.18 0.22 1.78 16 29 H 0.06 0.14 8.14 -2.38 -0.02 0.12 16 30 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16 31 H 0.06 0.48 5.88 -2.39 -0.01 0.47 16 32 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 33 H 0.10 -0.59 8.14 -2.39 -0.02 -0.61 16 34 H 0.07 -0.16 8.14 -2.38 -0.02 -0.18 16 35 H 0.07 0.40 5.88 -2.39 -0.01 0.39 16 36 H 0.09 -0.16 8.14 -2.39 -0.02 -0.18 16 37 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 38 H 0.41 -1.31 8.34 -92.71 -0.77 -2.08 16 39 H 0.11 -0.84 7.98 -2.39 -0.02 -0.86 16 40 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 41 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 42 H 0.13 -1.96 8.06 -2.39 -0.02 -1.98 16 43 H 0.09 -0.66 7.62 -2.39 -0.02 -0.67 16 44 H 0.10 -1.43 5.12 -2.38 -0.01 -1.44 16 45 H 0.43 -2.92 8.67 -96.75 -0.84 -3.76 16 46 H 0.13 0.62 7.96 -2.39 -0.02 0.60 16 47 H 0.40 -0.90 8.48 -74.06 -0.63 -1.53 16 48 H -0.24 0.07 7.11 99.48 0.71 0.78 16 49 H -0.26 -0.91 7.11 99.48 0.71 -0.20 16 50 H 0.20 -2.42 8.06 -2.91 -0.02 -2.44 16 51 H 0.18 -2.07 4.84 -2.91 -0.01 -2.09 16 52 H 0.13 -1.86 7.75 -2.38 -0.02 -1.88 16 53 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 Total: 0.00 -29.41 447.34 -4.05 -33.46 By element: Atomic # 1 Polarization: -19.23 SS G_CDS: -1.21 Total: -20.44 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 5.59 Total: 11.03 kcal Atomic # 7 Polarization: 5.42 SS G_CDS: -4.31 Total: 1.11 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -5.59 Total: -36.55 kcal Atomic # 9 Polarization: 0.10 SS G_CDS: 0.76 Total: 0.86 kcal Atomic # 14 Polarization: -1.58 SS G_CDS: 2.13 Total: 0.55 kcal Atomic # 16 Polarization: 11.40 SS G_CDS: -1.42 Total: 9.99 kcal Total: -29.41 -4.05 -33.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16499944_14772022.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.533 kcal (2) G-P(sol) polarization free energy of solvation -29.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds