Wall clock time and date at job start Mon Mar 8 2021 11:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53012 * 109.47096 * 2 1 4 4 C 1.52994 * 109.47407 * 240.00389 * 2 1 3 5 5 O 1.45201 * 109.47310 * 119.99730 * 2 1 3 6 6 C 1.34639 * 116.99638 * 60.00623 * 5 2 1 7 7 O 1.21504 * 120.00091 * 359.97438 * 6 5 2 8 8 N 1.34780 * 119.99618 * 180.02562 * 6 5 2 9 9 C 1.46503 * 119.99739 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47052 * 179.97438 * 9 8 6 11 11 F 1.39902 * 112.85153 * 48.79927 * 10 9 8 12 12 C 1.53781 * 113.61646 * 179.97438 * 10 9 8 13 13 C 1.53780 * 87.08151 * 140.06306 * 12 10 9 14 14 H 1.08993 * 113.61238 * 89.20283 * 13 12 10 15 15 C 1.52999 * 113.61209 * 220.02213 * 13 12 10 16 16 N 1.46501 * 109.47132 * 183.47424 * 15 13 12 17 17 S 1.65599 * 120.00238 * 164.99733 * 16 15 13 18 18 O 1.42090 * 106.40350 * 311.45745 * 17 16 15 19 19 O 1.42104 * 106.40081 * 178.53910 * 17 16 15 20 20 C 1.76201 * 107.21758 * 65.00212 * 17 16 15 21 21 C 1.33384 * 122.54418 * 89.97227 * 20 17 16 22 22 S 1.75878 * 109.59665 * 180.02562 * 21 20 17 23 23 C 1.75888 * 90.97083 * 359.97438 * 22 21 20 24 24 C 1.50699 * 125.20349 * 179.97438 * 23 22 21 25 25 O 1.42907 * 109.46603 * 245.02856 * 24 23 22 26 26 Si 1.86298 * 109.47032 * 5.02159 * 24 23 22 27 27 C 1.33383 * 109.58913 * 0.22871 * 23 22 21 28 28 C 1.53785 * 87.17222 * 334.60916 * 13 12 10 29 29 H 1.09000 * 109.47461 * 299.99989 * 1 2 3 30 30 H 1.09000 * 109.47483 * 60.00172 * 1 2 3 31 31 H 1.09010 * 109.47228 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46806 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46814 * 300.00238 * 3 2 1 34 34 H 1.09005 * 109.46510 * 59.99779 * 3 2 1 35 35 H 1.09005 * 109.47159 * 299.99536 * 4 2 1 36 36 H 1.08993 * 109.47568 * 59.99541 * 4 2 1 37 37 H 1.09000 * 109.47729 * 179.97438 * 4 2 1 38 38 H 0.97003 * 120.00162 * 359.97438 * 8 6 5 39 39 H 1.08995 * 109.46929 * 59.99294 * 9 8 6 40 40 H 1.09000 * 109.46529 * 299.99674 * 9 8 6 41 41 H 1.09009 * 113.61243 * 25.51268 * 12 10 9 42 42 H 1.08999 * 113.61573 * 254.61472 * 12 10 9 43 43 H 1.08995 * 109.47509 * 63.47002 * 15 13 12 44 44 H 1.09006 * 109.47405 * 303.46957 * 15 13 12 45 45 H 0.97001 * 119.99699 * 344.99743 * 16 15 13 46 46 H 1.08007 * 125.20068 * 0.02562 * 21 20 17 47 47 H 1.08996 * 109.47117 * 125.02769 * 24 23 22 48 48 H 0.96697 * 114.00527 * 59.99993 * 25 24 23 49 49 H 1.48506 * 109.99834 * 58.68765 * 26 24 23 50 50 H 1.48502 * 110.00011 * 180.02562 * 26 24 23 51 51 H 1.07998 * 122.53709 * 179.74889 * 27 23 22 52 52 H 1.09002 * 113.60548 * 139.94040 * 28 13 12 53 53 H 1.08998 * 113.61370 * 270.83805 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 -1.2492 5 8 2.0139 -0.6844 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9510 -2.5094 0.5040 8 7 2.0673 -2.6654 2.4172 9 6 1.6742 -4.0669 2.5831 10 6 2.2742 -4.6148 3.8795 11 9 2.0544 -3.7756 4.9771 12 6 1.9190 -6.0865 4.1489 13 6 3.3651 -6.2636 4.6411 14 1 3.4921 -6.0618 5.7047 15 6 4.0028 -7.5848 4.2067 16 7 5.3418 -7.6959 4.7906 17 16 6.1195 -9.1579 4.8066 18 8 5.1860 -10.1034 5.3100 19 8 7.3908 -8.9297 5.3990 20 6 6.4250 -9.6045 3.1297 21 6 7.5411 -9.2579 2.4868 22 16 7.4904 -9.8770 0.8413 23 6 5.9099 -10.5936 1.1278 24 6 5.1123 -11.3721 0.1135 25 8 3.9114 -10.6615 -0.1951 26 14 6.1219 -11.5881 -1.4373 27 6 5.5229 -10.3379 2.3783 28 6 3.7369 -5.0745 3.7397 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0278 0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6765 1.9564 -0.8900 34 1 1.6765 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7208 -1.2495 38 1 2.6268 -2.2364 3.0834 39 1 2.0414 -4.6496 1.7384 40 1 0.5874 -4.1365 2.6274 41 1 1.6925 -6.6535 3.2458 42 1 1.1720 -6.2192 4.9316 43 1 4.0770 -7.6124 3.1197 44 1 3.3867 -8.4159 4.5501 45 1 5.7729 -6.9131 5.1678 46 1 8.3519 -8.6847 2.9117 47 1 4.8606 -12.3505 0.5225 48 1 4.0596 -9.7801 -0.5643 49 1 7.3883 -12.2977 -1.1241 50 1 5.3462 -12.3538 -2.4458 51 1 4.5782 -10.6790 2.7753 52 1 4.4554 -4.3913 4.1926 53 1 4.0084 -5.3642 2.7246 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16499944_15065232.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:37:46 Heat of formation + Delta-G solvation = -175.516845 kcal Electronic energy + Delta-G solvation = -39069.191634 eV Core-core repulsion = 33690.852017 eV Total energy + Delta-G solvation = -5378.339618 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 437.127 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -48.80161 -41.80556 -39.91447 -39.45665 -38.44982 -38.34698 -37.50423 -37.02171 -36.19936 -35.41070 -34.69886 -31.79698 -29.91516 -28.35738 -28.29652 -27.23781 -27.08507 -26.79679 -24.92304 -23.52922 -22.27256 -21.41959 -21.21224 -20.65093 -20.08135 -19.31621 -19.17868 -18.51106 -17.90409 -17.76898 -17.66199 -17.39135 -17.26079 -16.90279 -16.58502 -16.37212 -16.29025 -15.96585 -15.76491 -15.45026 -15.41857 -15.23981 -15.05967 -14.83556 -14.44148 -14.42151 -14.27643 -14.15702 -14.02771 -13.93546 -13.87520 -13.36616 -13.33735 -13.30538 -13.21639 -13.10583 -13.07356 -12.91881 -12.90512 -12.86354 -12.53626 -12.48657 -12.35208 -12.20732 -12.13936 -11.96805 -11.65852 -11.39671 -11.32367 -11.22297 -11.10168 -10.64836 -10.49616 -10.29481 -10.16485 -9.81289 -5.19910 -0.77204 -0.44906 0.35834 0.61124 1.00362 1.11321 1.17956 1.54362 1.72840 1.85629 2.08947 2.69723 2.99559 3.16909 3.20144 3.27977 3.30605 3.45475 3.57848 3.60624 3.66737 3.74731 3.80246 3.93156 3.95079 4.08230 4.21113 4.29958 4.39447 4.40542 4.48783 4.55251 4.60305 4.62547 4.66483 4.74114 4.75766 4.77466 4.80891 4.82650 4.86489 4.88308 4.92389 4.96017 5.03201 5.06959 5.08748 5.09311 5.20846 5.28085 5.34445 5.46322 5.56086 6.06767 6.30437 6.69082 7.28597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.127 3.873 3 C -0.139 4.139 4 C -0.179 4.179 5 O -0.371 6.371 6 C 0.646 3.354 7 O -0.590 6.590 8 N -0.702 5.702 9 C 0.130 3.870 10 C 0.076 3.924 11 F -0.200 7.200 12 C -0.137 4.137 13 C -0.111 4.111 14 H 0.102 0.898 15 C 0.121 3.879 16 N -1.102 6.102 17 S 2.726 3.274 18 O -0.987 6.987 19 O -0.987 6.987 20 C -0.692 4.692 21 C -0.084 4.084 22 S 0.186 5.814 23 C -0.234 4.234 24 C -0.028 4.028 25 O -0.544 6.544 26 Si 0.730 3.270 27 C -0.056 4.056 28 C -0.143 4.143 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.415 0.585 39 H 0.106 0.894 40 H 0.073 0.927 41 H 0.129 0.871 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.429 0.571 46 H 0.203 0.797 47 H 0.120 0.880 48 H 0.398 0.602 49 H -0.268 1.268 50 H -0.271 1.271 51 H 0.154 0.846 52 H 0.088 0.912 53 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.094 5.025 -4.989 7.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.091 3.909 3 C -0.196 4.196 4 C -0.236 4.236 5 O -0.286 6.286 6 C 0.399 3.601 7 O -0.481 6.481 8 N -0.362 5.362 9 C 0.008 3.992 10 C 0.057 3.943 11 F -0.181 7.181 12 C -0.176 4.176 13 C -0.131 4.131 14 H 0.120 0.880 15 C -0.005 4.005 16 N -0.866 5.866 17 S 2.815 3.185 18 O -0.976 6.976 19 O -0.977 6.977 20 C -0.793 4.793 21 C -0.224 4.224 22 S 0.450 5.550 23 C -0.352 4.352 24 C -0.141 4.141 25 O -0.352 6.352 26 Si 0.634 3.366 27 C -0.085 4.085 28 C -0.180 4.180 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.251 0.749 39 H 0.124 0.876 40 H 0.092 0.908 41 H 0.147 0.853 42 H 0.105 0.895 43 H 0.112 0.888 44 H 0.100 0.900 45 H 0.267 0.733 46 H 0.220 0.780 47 H 0.137 0.863 48 H 0.248 0.752 49 H -0.194 1.194 50 H -0.197 1.197 51 H 0.172 0.828 52 H 0.107 0.893 53 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.951 3.152 -6.366 7.692 hybrid contribution -0.866 0.223 1.774 1.987 sum 2.085 3.374 -4.592 6.068 Atomic orbital electron populations 1.22485 0.94163 1.03755 1.03437 1.22361 0.94375 0.92568 0.81589 1.21903 1.02524 0.90996 1.04163 1.22468 1.01749 1.02336 0.97077 1.86317 1.71544 1.23301 1.47397 1.18249 0.78686 0.80797 0.82333 1.90912 1.41966 1.70961 1.44236 1.44559 1.55535 1.12745 1.23386 1.21916 1.00853 0.79387 0.97081 1.22262 0.99729 0.90039 0.82259 1.92865 1.95842 1.73406 1.55943 1.23634 0.97261 0.92164 1.04569 1.22673 0.95582 0.93919 1.00950 0.88019 1.21531 0.81144 0.98682 0.99124 1.55184 1.27502 1.27963 1.75939 1.00733 0.72097 0.72711 0.72960 1.93561 1.64204 1.61961 1.77915 1.93571 1.42702 1.85598 1.75869 1.29805 1.04163 1.17988 1.27391 1.26215 0.99615 0.98818 0.97702 1.84300 1.14296 1.46546 1.09887 1.25155 1.00387 1.09363 1.00263 1.24486 0.90699 0.96311 1.02644 1.86519 1.28316 1.34836 1.85515 0.94330 0.76887 0.89204 0.76223 1.19676 0.99912 0.96748 0.92126 1.23856 0.93824 0.97439 1.02881 0.92218 0.89408 0.91635 0.91068 0.88283 0.91424 0.91474 0.89523 0.91732 0.74880 0.87565 0.90846 0.85283 0.89474 0.88780 0.90038 0.73343 0.78044 0.86252 0.75203 1.19423 1.19680 0.82809 0.89301 0.85813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.43 8.37 71.98 0.60 0.17 16 2 C 0.13 0.22 1.13 -10.80 -0.01 0.21 16 3 C -0.14 0.40 8.85 71.99 0.64 1.04 16 4 C -0.18 -0.20 8.37 71.98 0.60 0.40 16 5 O -0.37 -1.65 9.94 -55.48 -0.55 -2.20 16 6 C 0.65 3.18 8.06 129.79 1.05 4.22 16 7 O -0.59 -5.56 11.88 19.83 0.24 -5.32 16 8 N -0.70 0.69 5.47 -590.86 -3.23 -2.55 16 9 C 0.13 -0.60 5.37 86.38 0.46 -0.14 16 10 C 0.08 -0.52 1.67 -10.21 -0.02 -0.54 16 11 F -0.20 0.16 16.79 44.97 0.76 0.91 16 12 C -0.14 1.31 7.10 31.12 0.22 1.53 16 13 C -0.11 1.07 3.75 -10.27 -0.04 1.03 16 14 H 0.10 -0.80 8.14 -2.39 -0.02 -0.82 16 15 C 0.12 -1.09 6.05 86.38 0.52 -0.57 16 16 N -1.10 7.39 6.00 -187.49 -1.12 6.26 16 17 S 2.73 2.08 5.80 -56.49 -0.33 1.75 16 18 O -0.99 -7.91 17.11 -128.00 -2.19 -10.10 16 19 O -0.99 -6.52 17.64 -128.00 -2.26 -8.78 16 20 C -0.69 1.13 5.86 21.22 0.12 1.26 16 21 C -0.08 0.35 10.70 66.72 0.71 1.06 16 22 S 0.19 -0.97 20.60 -56.49 -1.16 -2.14 16 23 C -0.23 0.68 5.70 24.59 0.14 0.82 16 24 C -0.03 0.10 2.96 71.24 0.21 0.31 16 25 O -0.54 2.14 12.88 -148.98 -1.92 0.22 16 26 Si 0.73 -2.99 30.98 68.60 2.13 -0.87 16 27 C -0.06 0.07 9.59 21.22 0.20 0.27 16 28 C -0.14 1.54 7.09 31.18 0.22 1.76 16 29 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 30 H 0.09 -0.10 8.14 -2.39 -0.02 -0.12 16 31 H 0.06 0.48 5.88 -2.38 -0.01 0.46 16 32 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 33 H 0.10 -0.61 8.14 -2.39 -0.02 -0.63 16 34 H 0.07 -0.18 8.14 -2.38 -0.02 -0.19 16 35 H 0.07 0.39 5.88 -2.38 -0.01 0.38 16 36 H 0.09 -0.18 8.14 -2.39 -0.02 -0.20 16 37 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 38 H 0.41 -1.38 8.30 -92.71 -0.77 -2.15 16 39 H 0.11 -0.76 7.95 -2.39 -0.02 -0.78 16 40 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 41 H 0.13 -1.72 8.06 -2.38 -0.02 -1.74 16 42 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 43 H 0.09 -1.24 7.87 -2.39 -0.02 -1.26 16 44 H 0.08 -0.59 7.75 -2.38 -0.02 -0.60 16 45 H 0.43 -4.25 8.65 -96.74 -0.84 -5.09 16 46 H 0.20 -1.63 8.00 -2.91 -0.02 -1.65 16 47 H 0.12 -0.26 7.96 -2.39 -0.02 -0.28 16 48 H 0.40 -4.95 8.70 -74.06 -0.64 -5.60 16 49 H -0.27 -0.21 7.11 99.48 0.71 0.50 16 50 H -0.27 -0.68 7.11 99.48 0.71 0.03 16 51 H 0.15 -0.16 7.97 -2.91 -0.02 -0.19 16 52 H 0.09 -0.93 8.14 -2.39 -0.02 -0.95 16 53 H 0.12 -1.73 7.75 -2.39 -0.02 -1.75 16 Total: 0.00 -28.37 460.21 -5.25 -33.62 By element: Atomic # 1 Polarization: -22.40 SS G_CDS: -1.24 Total: -23.64 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 5.64 Total: 12.83 kcal Atomic # 7 Polarization: 8.07 SS G_CDS: -4.36 Total: 3.72 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -6.68 Total: -26.18 kcal Atomic # 9 Polarization: 0.16 SS G_CDS: 0.76 Total: 0.91 kcal Atomic # 14 Polarization: -2.99 SS G_CDS: 2.13 Total: -0.87 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -1.49 Total: -0.38 kcal Total: -28.37 -5.25 -33.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16499944_15065232.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.896 kcal (2) G-P(sol) polarization free energy of solvation -28.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds