Wall clock time and date at job start Mon Mar 8 2021 11:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46614 * 2 1 4 4 C 1.52994 * 109.47457 * 240.00014 * 2 1 3 5 5 O 1.45200 * 109.47215 * 119.99541 * 2 1 3 6 6 C 1.34638 * 116.99928 * 60.00123 * 5 2 1 7 7 O 1.21517 * 119.99694 * 0.02562 * 6 5 2 8 8 N 1.34772 * 120.00262 * 179.97438 * 6 5 2 9 9 C 1.46494 * 120.00463 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47391 * 180.02562 * 9 8 6 11 11 F 1.39898 * 112.90974 * 316.25376 * 10 9 8 12 12 C 1.53962 * 113.66529 * 87.55384 * 10 9 8 13 13 C 1.53782 * 87.11063 * 139.88900 * 12 10 9 14 14 H 1.09004 * 113.68975 * 220.07786 * 13 12 10 15 15 C 1.52994 * 113.61379 * 89.18901 * 13 12 10 16 16 N 1.46498 * 109.47472 * 87.49745 * 15 13 12 17 17 S 1.65597 * 119.99894 * 164.99781 * 16 15 13 18 18 O 1.42102 * 106.40227 * 178.54466 * 17 16 15 19 19 O 1.42094 * 106.40656 * 311.46433 * 17 16 15 20 20 C 1.76198 * 107.21867 * 65.00619 * 17 16 15 21 21 C 1.33385 * 125.20374 * 179.71633 * 20 17 16 22 22 C 1.50703 * 122.54107 * 0.02562 * 21 20 17 23 23 O 1.42903 * 109.47110 * 284.99983 * 22 21 20 24 24 Si 1.86303 * 109.47118 * 164.99844 * 22 21 20 25 25 C 1.38429 * 114.92175 * 179.85597 * 21 20 17 26 26 C 1.33386 * 114.91964 * 0.43742 * 25 21 20 27 27 S 1.75887 * 125.20173 * 0.02562 * 20 17 16 28 28 C 1.53781 * 87.08260 * 334.63747 * 13 12 10 29 29 H 1.09003 * 109.47495 * 299.99886 * 1 2 3 30 30 H 1.09002 * 109.47212 * 60.00604 * 1 2 3 31 31 H 1.09003 * 109.46953 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47021 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47325 * 299.99647 * 3 2 1 34 34 H 1.08999 * 109.47521 * 59.99665 * 3 2 1 35 35 H 1.09003 * 109.47105 * 299.99988 * 4 2 1 36 36 H 1.09002 * 109.47414 * 59.99505 * 4 2 1 37 37 H 1.09003 * 109.47214 * 179.97438 * 4 2 1 38 38 H 0.97000 * 119.99857 * 0.02562 * 8 6 5 39 39 H 1.09002 * 109.47287 * 60.00002 * 9 8 6 40 40 H 1.09004 * 109.47020 * 300.00283 * 9 8 6 41 41 H 1.08997 * 113.53543 * 25.33574 * 12 10 9 42 42 H 1.08994 * 113.66446 * 254.45777 * 12 10 9 43 43 H 1.09001 * 109.47094 * 207.50242 * 15 13 12 44 44 H 1.09007 * 109.46785 * 327.49852 * 15 13 12 45 45 H 0.97001 * 119.99951 * 345.00842 * 16 15 13 46 46 H 1.09001 * 109.47256 * 45.00147 * 22 21 20 47 47 H 0.96695 * 113.99879 * 299.99733 * 23 22 21 48 48 H 1.48507 * 109.99589 * 180.02562 * 24 22 21 49 49 H 1.48500 * 110.00067 * 301.31956 * 24 22 21 50 50 H 1.08003 * 122.54203 * 180.19847 * 25 21 20 51 51 H 1.07996 * 125.20611 * 179.75121 * 26 25 21 52 52 H 1.09002 * 113.61445 * 139.98212 * 28 13 12 53 53 H 1.09002 * 113.61408 * 270.79943 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0141 -0.6844 1.1856 6 6 1.6523 -1.9722 1.3385 7 8 0.9517 -2.5096 0.5036 8 7 2.0681 -2.6656 2.4168 9 6 1.6750 -4.0670 2.5828 10 6 2.2750 -4.6148 3.8793 11 9 3.6103 -4.2401 4.0623 12 6 1.3922 -4.3765 5.1179 13 6 1.7818 -5.7932 5.5719 14 1 0.9576 -6.3538 6.0131 15 6 3.0525 -5.8363 6.4228 16 7 2.7043 -5.6331 7.8312 17 16 3.8032 -5.9941 9.0162 18 8 3.1857 -5.6596 10.2516 19 8 4.2989 -7.2929 8.7218 20 6 5.1609 -4.8878 8.8230 21 6 6.2480 -4.8623 9.5955 22 6 6.4413 -5.8063 10.7543 23 8 5.6112 -5.3992 11.8439 24 14 8.2259 -5.7766 11.2884 25 6 7.1868 -3.9055 9.2500 26 6 6.8580 -3.1480 8.2025 27 16 5.2866 -3.6431 7.5867 28 6 2.0227 -6.1174 4.0881 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6765 1.9564 0.8899 35 1 1.6768 -1.7489 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1301 -0.7208 -1.2494 38 1 2.6277 -2.2367 3.0829 39 1 2.0415 -4.6498 1.7377 40 1 0.5881 -4.1365 2.6281 41 1 0.3332 -4.2688 4.8834 42 1 1.7633 -3.5900 5.7749 43 1 3.5364 -6.8058 6.3043 44 1 3.7331 -5.0486 6.0995 45 1 1.8299 -5.2873 8.0696 46 1 6.1703 -6.8169 10.4488 47 1 5.7971 -4.5075 12.1682 48 1 8.4298 -6.7039 12.4302 49 1 9.1019 -6.1673 10.1547 50 1 8.1135 -3.7792 9.7901 51 1 7.4638 -2.3522 7.7950 52 1 2.9028 -6.7363 3.9137 53 1 1.1363 -6.4872 3.5724 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16500042_13652106.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:38:10 Heat of formation + Delta-G solvation = -169.592606 kcal Electronic energy + Delta-G solvation = -39793.248749 eV Core-core repulsion = 34415.166025 eV Total energy + Delta-G solvation = -5378.082723 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 437.127 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -48.88751 -41.82422 -40.08405 -39.96295 -38.49292 -38.38463 -37.19606 -37.05344 -36.31709 -35.50567 -34.73896 -31.44633 -29.98522 -28.37867 -28.31415 -28.09910 -27.10109 -26.79018 -24.33605 -23.74315 -22.72005 -21.74033 -21.23747 -20.32035 -20.01752 -19.70738 -19.36157 -18.60264 -18.01041 -17.93726 -17.64188 -17.40654 -16.95938 -16.93071 -16.77366 -16.39280 -16.16805 -16.04260 -15.82347 -15.71841 -15.47239 -15.30383 -15.15093 -14.98239 -14.52915 -14.44694 -14.40403 -14.23461 -13.99805 -13.95725 -13.72883 -13.43500 -13.38992 -13.33515 -13.27174 -13.15384 -13.06264 -12.92921 -12.88167 -12.77223 -12.55224 -12.52462 -12.38047 -12.32075 -12.29181 -12.01498 -11.78720 -11.41846 -11.40489 -11.25392 -11.13911 -10.71438 -10.62657 -10.40934 -10.31333 -9.61520 -5.10787 -0.85398 -0.67067 0.21115 0.66447 1.09180 1.13562 1.27846 1.61389 1.70593 1.80483 1.91723 2.45739 2.96780 3.11518 3.21648 3.26518 3.28893 3.39105 3.43733 3.48082 3.59756 3.72798 3.78171 3.84676 3.93126 3.99339 4.13010 4.23006 4.26205 4.33101 4.42664 4.51228 4.55670 4.60268 4.62720 4.68142 4.71456 4.73397 4.75486 4.75782 4.84305 4.86530 4.88755 4.91492 4.98542 5.00501 5.09938 5.11886 5.19022 5.25905 5.30187 5.33388 5.54238 5.89503 6.28832 6.64285 7.26697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.370 6.370 6 C 0.646 3.354 7 O -0.592 6.592 8 N -0.701 5.701 9 C 0.131 3.869 10 C 0.076 3.924 11 F -0.192 7.192 12 C -0.145 4.145 13 C -0.117 4.117 14 H 0.115 0.885 15 C 0.113 3.887 16 N -1.104 6.104 17 S 2.724 3.276 18 O -0.964 6.964 19 O -0.988 6.988 20 C -0.798 4.798 21 C -0.004 4.004 22 C -0.126 4.126 23 O -0.541 6.541 24 Si 0.821 3.179 25 C -0.168 4.168 26 C -0.153 4.153 27 S 0.228 5.772 28 C -0.137 4.137 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.416 0.584 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.125 0.875 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.433 0.567 46 H 0.095 0.905 47 H 0.399 0.601 48 H -0.290 1.290 49 H -0.273 1.273 50 H 0.188 0.812 51 H 0.214 0.786 52 H 0.089 0.911 53 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.579 7.796 -2.644 8.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.284 6.284 6 C 0.399 3.601 7 O -0.483 6.483 8 N -0.361 5.361 9 C 0.008 3.992 10 C 0.057 3.943 11 F -0.172 7.172 12 C -0.182 4.182 13 C -0.137 4.137 14 H 0.133 0.867 15 C -0.013 4.013 16 N -0.869 5.869 17 S 2.811 3.189 18 O -0.954 6.954 19 O -0.978 6.978 20 C -1.001 5.001 21 C -0.022 4.022 22 C -0.235 4.235 23 O -0.350 6.350 24 Si 0.722 3.278 25 C -0.197 4.197 26 C -0.290 4.290 27 S 0.494 5.506 28 C -0.176 4.176 29 H 0.082 0.918 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.079 0.921 38 H 0.252 0.748 39 H 0.095 0.905 40 H 0.120 0.880 41 H 0.143 0.857 42 H 0.109 0.891 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.272 0.728 46 H 0.112 0.888 47 H 0.250 0.750 48 H -0.218 1.218 49 H -0.199 1.199 50 H 0.205 0.795 51 H 0.231 0.769 52 H 0.107 0.893 53 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.893 6.384 -3.744 7.454 hybrid contribution 0.667 -0.249 0.795 1.067 sum 1.560 6.134 -2.950 6.983 Atomic orbital electron populations 1.22474 0.93852 1.03789 1.03570 1.22364 0.94588 0.92537 0.81414 1.21895 1.02427 0.90907 1.04290 1.22480 1.01592 1.02296 0.97419 1.86313 1.71527 1.23257 1.47310 1.18263 0.78728 0.80833 0.82283 1.90918 1.42252 1.70984 1.44106 1.44529 1.55497 1.12578 1.23538 1.21915 1.01506 0.78914 0.96890 1.22367 0.78189 0.98220 0.95532 1.92838 1.35810 1.92487 1.96061 1.23852 1.01739 0.97553 0.95104 1.22466 0.97500 0.98567 0.95139 0.86678 1.21586 0.98327 1.02778 0.78600 1.55221 1.29541 1.83745 1.18421 1.00792 0.72730 0.73085 0.72259 1.93614 1.75308 1.84655 1.41775 1.93561 1.81562 1.37572 1.85126 1.35471 1.24210 1.25792 1.14598 1.19269 0.91970 0.96050 0.94943 1.25806 1.12832 0.97676 0.87188 1.86638 1.61386 1.39028 1.47910 0.93625 0.68842 0.87395 0.77937 1.20442 1.01963 0.96838 1.00424 1.26681 0.99469 1.03756 0.99070 1.84063 1.16175 1.24034 1.26291 1.23666 1.05610 0.93102 0.95211 0.91821 0.89512 0.91637 0.91263 0.88311 0.91103 0.91717 0.89444 0.92055 0.74756 0.90533 0.88002 0.85662 0.89103 0.90125 0.90071 0.72848 0.88771 0.75010 1.21792 1.19932 0.79523 0.76947 0.89281 0.85031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.30 8.37 71.98 0.60 0.30 16 2 C 0.13 0.22 1.13 -10.80 -0.01 0.21 16 3 C -0.14 0.43 8.85 71.98 0.64 1.07 16 4 C -0.18 -0.41 8.37 71.98 0.60 0.19 16 5 O -0.37 -1.57 9.94 -55.48 -0.55 -2.12 16 6 C 0.65 3.22 8.06 129.79 1.05 4.27 16 7 O -0.59 -5.85 11.88 19.79 0.24 -5.61 16 8 N -0.70 0.84 5.45 -590.86 -3.22 -2.38 16 9 C 0.13 -0.60 5.43 86.38 0.47 -0.13 16 10 C 0.08 -0.54 1.74 -10.20 -0.02 -0.56 16 11 F -0.19 0.64 14.81 44.97 0.67 1.30 16 12 C -0.15 1.43 7.08 31.18 0.22 1.65 16 13 C -0.12 0.96 3.97 -10.27 -0.04 0.92 16 14 H 0.12 -1.16 8.14 -2.38 -0.02 -1.18 16 15 C 0.11 -0.36 5.58 86.38 0.48 0.12 16 16 N -1.10 1.18 5.81 -187.49 -1.09 0.09 16 17 S 2.72 21.41 5.07 -56.49 -0.29 21.12 16 18 O -0.96 -13.15 17.41 -125.52 -2.19 -15.33 16 19 O -0.99 -14.26 16.99 -128.00 -2.17 -16.43 16 20 C -0.80 -3.37 6.46 66.72 0.43 -2.94 16 21 C 0.00 -0.01 5.14 -20.92 -0.11 -0.12 16 22 C -0.13 -0.61 2.33 71.24 0.17 -0.45 16 23 O -0.54 -3.20 12.27 -147.81 -1.81 -5.02 16 24 Si 0.82 -1.19 30.24 68.60 2.07 0.89 16 25 C -0.17 0.67 8.74 21.22 0.19 0.86 16 26 C -0.15 0.92 11.23 66.72 0.75 1.67 16 27 S 0.23 -0.59 21.09 -56.49 -1.19 -1.78 16 28 C -0.14 1.23 7.12 31.12 0.22 1.45 16 29 H 0.06 0.05 8.14 -2.39 -0.02 0.04 16 30 H 0.09 -0.13 8.14 -2.39 -0.02 -0.15 16 31 H 0.06 0.44 5.88 -2.39 -0.01 0.42 16 32 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 33 H 0.10 -0.62 8.14 -2.39 -0.02 -0.64 16 34 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 35 H 0.06 0.48 5.88 -2.39 -0.01 0.46 16 36 H 0.09 -0.10 8.14 -2.39 -0.02 -0.12 16 37 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.42 -1.65 8.14 -92.71 -0.75 -2.41 16 39 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 40 H 0.10 -0.62 7.84 -2.38 -0.02 -0.64 16 41 H 0.13 -1.59 7.90 -2.39 -0.02 -1.61 16 42 H 0.09 -0.89 8.10 -2.39 -0.02 -0.91 16 43 H 0.08 -0.09 7.75 -2.39 -0.02 -0.11 16 44 H 0.08 -0.33 4.43 -2.38 -0.01 -0.34 16 45 H 0.43 -2.46 8.65 -96.75 -0.84 -3.29 16 46 H 0.09 0.91 7.26 -2.39 -0.02 0.89 16 47 H 0.40 -1.72 8.70 -74.06 -0.64 -2.36 16 48 H -0.29 -1.64 7.11 99.48 0.71 -0.94 16 49 H -0.27 -0.58 7.11 99.48 0.71 0.12 16 50 H 0.19 -2.03 5.72 -2.91 -0.02 -2.04 16 51 H 0.21 -2.82 8.06 -2.91 -0.02 -2.85 16 52 H 0.09 -0.69 8.10 -2.39 -0.02 -0.71 16 53 H 0.13 -1.65 8.10 -2.39 -0.02 -1.67 16 Total: 0.00 -32.28 448.56 -5.11 -37.39 By element: Atomic # 1 Polarization: -19.43 SS G_CDS: -1.21 Total: -20.64 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 5.63 Total: 8.52 kcal Atomic # 7 Polarization: 2.02 SS G_CDS: -4.31 Total: -2.29 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -6.49 Total: -44.51 kcal Atomic # 9 Polarization: 0.64 SS G_CDS: 0.67 Total: 1.30 kcal Atomic # 14 Polarization: -1.19 SS G_CDS: 2.07 Total: 0.89 kcal Atomic # 16 Polarization: 20.83 SS G_CDS: -1.48 Total: 19.35 kcal Total: -32.28 -5.11 -37.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16500042_13652106.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.204 kcal (2) G-P(sol) polarization free energy of solvation -32.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds