Wall clock time and date at job start Mon Mar 8 2021 11:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47275 * 2 1 4 4 C 1.52998 * 109.47324 * 120.00328 * 2 1 3 5 5 O 1.45205 * 109.47378 * 240.00364 * 2 1 3 6 6 C 1.34644 * 116.99893 * 59.99584 * 5 2 1 7 7 O 1.21510 * 119.99867 * 0.02562 * 6 5 2 8 8 N 1.34768 * 119.99857 * 180.02562 * 6 5 2 9 9 C 1.46502 * 120.00027 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47316 * 180.02562 * 9 8 6 11 11 F 1.39904 * 112.84910 * 48.80185 * 10 9 8 12 12 C 1.53783 * 113.61165 * 179.97438 * 10 9 8 13 13 C 1.53780 * 87.07914 * 139.98155 * 12 10 9 14 14 H 1.08999 * 113.61545 * 219.93558 * 13 12 10 15 15 C 1.52997 * 113.61852 * 89.11248 * 13 12 10 16 16 N 1.46500 * 109.47605 * 174.99750 * 15 13 12 17 17 S 1.65598 * 120.00074 * 162.45024 * 16 15 13 18 18 O 1.42109 * 106.40034 * 181.89455 * 17 16 15 19 19 O 1.42100 * 106.40328 * 314.81625 * 17 16 15 20 20 C 1.76201 * 107.21923 * 68.35879 * 17 16 15 21 21 C 1.33383 * 122.54325 * 165.99687 * 20 17 16 22 22 C 1.50701 * 125.20269 * 0.02562 * 21 20 17 23 23 O 1.42909 * 109.46930 * 39.19629 * 22 21 20 24 24 Si 1.86301 * 109.47133 * 159.19457 * 22 21 20 25 25 S 1.75882 * 109.59361 * 179.90514 * 21 20 17 26 26 C 1.75878 * 90.97423 * 0.30131 * 25 21 20 27 27 C 1.33400 * 109.58971 * 359.83050 * 26 25 21 28 28 C 1.53778 * 113.61340 * 277.49237 * 10 9 8 29 29 H 1.09009 * 109.47315 * 59.99496 * 1 2 3 30 30 H 1.09001 * 109.47196 * 300.00142 * 1 2 3 31 31 H 1.08996 * 109.47345 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46827 * 60.00264 * 3 2 1 33 33 H 1.08998 * 109.47161 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47278 * 300.00421 * 3 2 1 35 35 H 1.08996 * 109.46896 * 59.99742 * 4 2 1 36 36 H 1.08998 * 109.47421 * 179.97438 * 4 2 1 37 37 H 1.09003 * 109.47117 * 299.99943 * 4 2 1 38 38 H 0.96998 * 120.00634 * 0.02562 * 8 6 5 39 39 H 1.09009 * 109.47086 * 299.99657 * 9 8 6 40 40 H 1.08999 * 109.47395 * 59.99738 * 9 8 6 41 41 H 1.09001 * 113.61136 * 254.52669 * 12 10 9 42 42 H 1.08999 * 113.61963 * 25.34708 * 12 10 9 43 43 H 1.09000 * 109.47368 * 295.00409 * 15 13 12 44 44 H 1.09002 * 109.46936 * 55.00053 * 15 13 12 45 45 H 0.97001 * 120.00084 * 342.45927 * 16 15 13 46 46 H 1.08998 * 109.46971 * 279.19466 * 22 21 20 47 47 H 0.96696 * 113.99729 * 66.06049 * 23 22 21 48 48 H 1.48498 * 109.99929 * 179.97438 * 24 22 21 49 49 H 1.48500 * 109.99890 * 301.32200 * 24 22 21 50 50 H 1.07997 * 125.20833 * 179.79698 * 26 25 21 51 51 H 1.08005 * 122.53422 * 179.97438 * 27 26 25 52 52 H 1.09001 * 113.61278 * 334.56872 * 28 10 9 53 53 H 1.08996 * 113.61188 * 105.47117 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 2.0140 -0.6844 -1.1856 6 6 1.6522 -0.1727 -2.3773 7 8 0.9515 0.8188 -2.4253 8 7 2.0672 -0.7604 -3.5169 9 6 1.6740 -0.2034 -4.8136 10 6 2.2730 -1.0527 -5.9364 11 9 2.0523 -2.4227 -5.7581 12 6 1.9174 -0.5502 -7.3456 13 6 3.3638 -0.8869 -7.7451 14 1 3.8172 -0.1486 -8.4065 15 6 3.5435 -2.3218 -8.2445 16 7 4.9200 -2.5081 -8.7102 17 16 5.5318 -4.0357 -8.8957 18 8 6.8821 -3.8795 -9.3101 19 8 5.1541 -4.7629 -7.7348 20 6 4.6794 -4.7783 -10.2473 21 6 5.1060 -5.8957 -10.8377 22 6 6.3414 -6.6664 -10.4493 23 8 6.4662 -6.6802 -9.0257 24 14 6.2058 -8.4149 -11.0778 25 16 4.0042 -6.3340 -12.1367 26 6 3.0014 -4.9287 -11.8008 27 6 3.5196 -4.2430 -10.7805 28 6 3.7334 -0.6995 -6.2638 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 -1.7489 1.2491 36 1 3.1300 -0.7217 1.2490 37 1 1.6767 -0.2075 2.1392 38 1 2.6262 -1.5521 -3.4787 39 1 0.5870 -0.2071 -4.8961 40 1 2.0411 0.8196 -4.8960 41 1 1.1709 -1.1622 -7.8519 42 1 1.6889 0.5149 -7.3847 43 1 3.3377 -3.0180 -7.4314 44 1 2.8532 -2.5095 -9.0669 45 1 5.4731 -1.7366 -8.9098 46 1 7.2191 -6.1902 -10.8864 47 1 5.7659 -7.1709 -8.5743 48 1 7.4183 -9.1853 -10.7017 49 1 4.9953 -9.0648 -10.5140 50 1 2.1038 -4.6614 -12.3385 51 1 3.0685 -3.3386 -10.3998 52 1 4.0029 0.3250 -6.0072 53 1 4.4525 -1.4320 -5.8971 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16500042_14772022.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:38:15 Heat of formation + Delta-G solvation = -165.639501 kcal Electronic energy + Delta-G solvation = -39771.280491 eV Core-core repulsion = 34393.369188 eV Total energy + Delta-G solvation = -5377.911304 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 437.127 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -48.88409 -41.84840 -39.98686 -39.71736 -38.49184 -38.22708 -37.86974 -36.87158 -36.25944 -35.45544 -34.73847 -31.85038 -29.95003 -28.39309 -28.33529 -27.58654 -27.09914 -26.73526 -24.55416 -23.70696 -22.69049 -21.72084 -21.28469 -20.60375 -20.00884 -19.45001 -19.34793 -18.48858 -17.94772 -17.77030 -17.52361 -17.42477 -17.32535 -16.91505 -16.85124 -16.67626 -16.41656 -15.90996 -15.71294 -15.56964 -15.53798 -15.46631 -15.10691 -14.90935 -14.54505 -14.44680 -14.26618 -14.15943 -14.13616 -13.95853 -13.78126 -13.40710 -13.30214 -13.21495 -13.14486 -13.10261 -13.05034 -12.94551 -12.90349 -12.79094 -12.55034 -12.51712 -12.39351 -12.31916 -12.25570 -11.94344 -11.62084 -11.43643 -11.38854 -11.26921 -11.24153 -11.15611 -10.51201 -10.33502 -10.12199 -9.72909 -5.22039 -0.73614 -0.51042 0.36426 0.65439 1.00486 1.08033 1.16458 1.47472 1.67817 1.76944 1.96988 2.66740 2.96213 3.00986 3.14633 3.22508 3.26697 3.29465 3.44129 3.46062 3.70539 3.71055 3.76438 3.90279 3.91308 4.03122 4.12392 4.23479 4.32213 4.41369 4.42243 4.49440 4.54905 4.58842 4.66956 4.68655 4.72308 4.73691 4.75007 4.81842 4.82776 4.84467 4.90598 4.91903 5.00093 5.01950 5.13636 5.15726 5.21545 5.24359 5.30220 5.34196 5.51493 6.02170 6.09693 6.24743 7.23364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.126 3.874 3 C -0.179 4.179 4 C -0.139 4.139 5 O -0.372 6.372 6 C 0.646 3.354 7 O -0.590 6.590 8 N -0.705 5.705 9 C 0.130 3.870 10 C 0.068 3.932 11 F -0.198 7.198 12 C -0.128 4.128 13 C -0.111 4.111 14 H 0.124 0.876 15 C 0.111 3.889 16 N -1.107 6.107 17 S 2.728 3.272 18 O -0.984 6.984 19 O -0.980 6.980 20 C -0.675 4.675 21 C -0.124 4.124 22 C -0.100 4.100 23 O -0.545 6.545 24 Si 0.766 3.234 25 S 0.193 5.807 26 C -0.206 4.206 27 C -0.105 4.105 28 C -0.155 4.155 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.413 0.587 39 H 0.078 0.922 40 H 0.104 0.896 41 H 0.097 0.903 42 H 0.134 0.866 43 H 0.076 0.924 44 H 0.095 0.905 45 H 0.430 0.570 46 H 0.148 0.852 47 H 0.394 0.606 48 H -0.262 1.262 49 H -0.257 1.257 50 H 0.205 0.795 51 H 0.176 0.824 52 H 0.124 0.876 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.776 2.463 -6.163 7.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.089 3.911 3 C -0.236 4.236 4 C -0.196 4.196 5 O -0.287 6.287 6 C 0.400 3.600 7 O -0.480 6.480 8 N -0.364 5.364 9 C 0.007 3.993 10 C 0.049 3.951 11 F -0.178 7.178 12 C -0.166 4.166 13 C -0.131 4.131 14 H 0.142 0.858 15 C -0.015 4.015 16 N -0.871 5.871 17 S 2.816 3.184 18 O -0.975 6.975 19 O -0.970 6.970 20 C -0.777 4.777 21 C -0.245 4.245 22 C -0.208 4.208 23 O -0.355 6.355 24 Si 0.663 3.337 25 S 0.457 5.543 26 C -0.341 4.341 27 C -0.132 4.132 28 C -0.193 4.193 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.078 0.922 32 H 0.107 0.893 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.119 0.881 38 H 0.249 0.751 39 H 0.097 0.903 40 H 0.122 0.878 41 H 0.116 0.884 42 H 0.152 0.848 43 H 0.094 0.906 44 H 0.113 0.887 45 H 0.267 0.733 46 H 0.166 0.834 47 H 0.245 0.755 48 H -0.187 1.187 49 H -0.182 1.182 50 H 0.222 0.778 51 H 0.193 0.807 52 H 0.142 0.858 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.221 0.700 -6.552 7.335 hybrid contribution -0.255 1.005 1.759 2.042 sum -3.476 1.705 -4.793 6.161 Atomic orbital electron populations 1.22474 0.93937 1.02861 1.04426 1.22393 0.94561 0.92656 0.81440 1.22469 1.01632 0.95056 1.04444 1.21900 1.02436 1.01203 0.94027 1.86326 1.71563 1.56745 1.14054 1.18243 0.78688 0.81454 0.81661 1.90904 1.42053 1.27702 1.87385 1.44614 1.55525 1.33143 1.03154 1.21954 1.01035 0.98026 0.78277 1.22464 0.99327 0.76436 0.96858 1.92857 1.95712 1.32898 1.96332 1.23627 0.97013 1.05147 0.90854 1.22503 0.97636 0.96093 0.96896 0.85768 1.21659 0.81161 0.98363 1.00288 1.55276 1.24026 1.24730 1.83056 1.00741 0.72143 0.72310 0.73218 1.93536 1.34173 1.85986 1.83762 1.93529 1.84092 1.72002 1.47398 1.29795 1.13199 1.09367 1.25291 1.25093 1.00870 0.97850 1.00705 1.25472 0.97020 1.13483 0.84839 1.86635 1.54779 1.76893 1.17145 0.94236 0.80168 0.70245 0.89048 1.84078 1.15304 1.25457 1.29453 1.26358 1.05750 0.98983 1.03054 1.20143 0.93568 1.02417 0.97109 1.23834 0.94142 1.04759 0.96533 0.91621 0.89268 0.92169 0.89342 0.91958 0.91531 0.91405 0.91254 0.88106 0.75068 0.90345 0.87811 0.88419 0.84759 0.90612 0.88718 0.73253 0.83422 0.75525 1.18669 1.18219 0.77786 0.80681 0.85783 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.71 8.37 71.98 0.60 -0.11 16 2 C 0.13 0.50 1.13 -10.79 -0.01 0.48 16 3 C -0.18 -0.61 8.37 71.98 0.60 0.00 16 4 C -0.14 0.10 8.85 71.98 0.64 0.74 16 5 O -0.37 -2.70 9.94 -55.53 -0.55 -3.25 16 6 C 0.65 4.95 8.06 129.79 1.05 6.00 16 7 O -0.59 -6.86 11.88 19.81 0.24 -6.62 16 8 N -0.70 -1.58 5.47 -590.84 -3.23 -4.82 16 9 C 0.13 -0.31 5.36 86.38 0.46 0.15 16 10 C 0.07 -0.32 1.65 -10.27 -0.02 -0.33 16 11 F -0.20 -0.34 15.01 44.97 0.68 0.34 16 12 C -0.13 1.33 7.13 31.12 0.22 1.55 16 13 C -0.11 1.03 3.99 -10.26 -0.04 0.99 16 14 H 0.12 -1.67 8.12 -2.39 -0.02 -1.69 16 15 C 0.11 -0.55 5.33 86.38 0.46 -0.09 16 16 N -1.11 2.59 5.71 -187.49 -1.07 1.52 16 17 S 2.73 18.05 4.23 -56.49 -0.24 17.81 16 18 O -0.98 -12.91 17.13 -123.45 -2.11 -15.02 16 19 O -0.98 -12.32 16.12 -120.46 -1.94 -14.26 16 20 C -0.68 -2.18 5.71 21.22 0.12 -2.06 16 21 C -0.12 -0.34 5.77 24.59 0.14 -0.20 16 22 C -0.10 -0.35 2.40 71.24 0.17 -0.18 16 23 O -0.54 -4.59 9.70 -125.45 -1.22 -5.81 16 24 Si 0.77 -0.99 31.09 68.60 2.13 1.14 16 25 S 0.19 -0.60 20.86 -56.49 -1.18 -1.78 16 26 C -0.21 0.97 11.23 66.72 0.75 1.72 16 27 C -0.11 0.25 9.52 21.22 0.20 0.45 16 28 C -0.16 1.00 7.07 31.13 0.22 1.22 16 29 H 0.06 0.58 5.88 -2.38 -0.01 0.56 16 30 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 33 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.07 0.54 5.88 -2.39 -0.01 0.52 16 35 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 36 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 37 H 0.10 -0.45 8.14 -2.39 -0.02 -0.47 16 38 H 0.41 0.37 8.30 -92.71 -0.77 -0.40 16 39 H 0.08 -0.09 8.14 -2.38 -0.02 -0.11 16 40 H 0.10 -0.48 7.94 -2.39 -0.02 -0.49 16 41 H 0.10 -1.07 8.10 -2.39 -0.02 -1.09 16 42 H 0.13 -1.94 8.10 -2.39 -0.02 -1.96 16 43 H 0.08 0.00 5.79 -2.39 -0.01 -0.01 16 44 H 0.10 -0.94 5.41 -2.39 -0.01 -0.95 16 45 H 0.43 -2.80 8.66 -96.75 -0.84 -3.64 16 46 H 0.15 0.39 7.96 -2.39 -0.02 0.37 16 47 H 0.39 1.42 8.48 -74.06 -0.63 0.79 16 48 H -0.26 -1.04 7.11 99.48 0.71 -0.34 16 49 H -0.26 -0.38 7.11 99.48 0.71 0.33 16 50 H 0.21 -2.27 8.06 -2.91 -0.02 -2.30 16 51 H 0.18 -1.44 4.84 -2.91 -0.01 -1.45 16 52 H 0.12 -1.22 7.96 -2.39 -0.02 -1.24 16 53 H 0.07 -0.19 8.10 -2.39 -0.02 -0.21 16 Total: 0.00 -29.85 444.03 -4.14 -33.99 By element: Atomic # 1 Polarization: -12.37 SS G_CDS: -1.20 Total: -13.57 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 5.57 Total: 10.34 kcal Atomic # 7 Polarization: 1.00 SS G_CDS: -4.30 Total: -3.30 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -5.59 Total: -44.97 kcal Atomic # 9 Polarization: -0.34 SS G_CDS: 0.68 Total: 0.34 kcal Atomic # 14 Polarization: -0.99 SS G_CDS: 2.13 Total: 1.14 kcal Atomic # 16 Polarization: 17.45 SS G_CDS: -1.42 Total: 16.04 kcal Total: -29.85 -4.14 -33.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16500042_14772022.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.649 kcal (2) G-P(sol) polarization free energy of solvation -29.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds