Wall clock time and date at job start Mon Mar 8 2021 11:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47210 * 2 1 4 4 C 1.53005 * 109.46880 * 240.00090 * 2 1 3 5 5 O 1.45198 * 109.47178 * 119.99907 * 2 1 3 6 6 C 1.34641 * 116.99863 * 60.00210 * 5 2 1 7 7 O 1.21510 * 119.99963 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99995 * 179.97438 * 6 5 2 9 9 C 1.46500 * 119.99833 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.46967 * 180.02562 * 9 8 6 11 11 F 1.39897 * 112.85168 * 48.79999 * 10 9 8 12 12 C 1.53782 * 113.61668 * 180.02562 * 10 9 8 13 13 C 1.53781 * 87.08224 * 89.19809 * 12 10 9 14 14 H 1.09006 * 113.61315 * 270.80477 * 13 12 10 15 15 C 1.52997 * 113.61559 * 139.98357 * 13 12 10 16 16 N 1.46505 * 109.47212 * 174.99892 * 15 13 12 17 17 S 1.65596 * 119.99941 * 164.99768 * 16 15 13 18 18 O 1.42098 * 106.40050 * 178.54251 * 17 16 15 19 19 O 1.42101 * 106.40475 * 311.46396 * 17 16 15 20 20 C 1.76206 * 107.21689 * 65.00216 * 17 16 15 21 21 C 1.33391 * 122.53672 * 269.70922 * 20 17 16 22 22 S 1.75888 * 109.59083 * 179.90370 * 21 20 17 23 23 C 1.75884 * 90.97050 * 0.30440 * 22 21 20 24 24 C 1.50696 * 125.20686 * 179.86880 * 23 22 21 25 25 O 1.42904 * 109.47219 * 244.95730 * 24 23 22 26 26 Si 1.86304 * 109.46872 * 4.95420 * 24 23 22 27 27 C 1.33396 * 109.59107 * 359.82526 * 23 22 21 28 28 C 1.53782 * 113.68852 * 277.53815 * 10 9 8 29 29 H 1.09001 * 109.47108 * 300.00154 * 1 2 3 30 30 H 1.09000 * 109.47255 * 59.99309 * 1 2 3 31 31 H 1.08996 * 109.46959 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47098 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.46907 * 300.00468 * 3 2 1 34 34 H 1.09001 * 109.47210 * 59.99909 * 3 2 1 35 35 H 1.08996 * 109.47156 * 299.99673 * 4 2 1 36 36 H 1.09000 * 109.46686 * 60.00252 * 4 2 1 37 37 H 1.09004 * 109.46705 * 179.97438 * 4 2 1 38 38 H 0.96999 * 119.99350 * 0.02562 * 8 6 5 39 39 H 1.08998 * 109.46656 * 60.00206 * 9 8 6 40 40 H 1.08998 * 109.47289 * 300.00272 * 9 8 6 41 41 H 1.09003 * 113.61213 * 334.65215 * 12 10 9 42 42 H 1.08992 * 113.69083 * 203.75797 * 12 10 9 43 43 H 1.09002 * 109.47153 * 54.99884 * 15 13 12 44 44 H 1.09001 * 109.46832 * 295.00075 * 15 13 12 45 45 H 0.96997 * 119.99914 * 345.00649 * 16 15 13 46 46 H 1.07997 * 125.20512 * 0.02742 * 21 20 17 47 47 H 1.09000 * 109.47834 * 124.95509 * 24 23 22 48 48 H 0.96701 * 113.99904 * 59.99508 * 25 24 23 49 49 H 1.48503 * 109.99954 * 180.02562 * 26 24 23 50 50 H 1.48506 * 109.99800 * 301.32067 * 26 24 23 51 51 H 1.08005 * 122.53300 * 180.02562 * 27 23 22 52 52 H 1.08998 * 113.61542 * 156.32432 * 28 10 9 53 53 H 1.08998 * 113.61766 * 25.42142 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3383 7 8 0.9509 -2.5094 0.5040 8 7 2.0681 -2.6657 2.4166 9 6 1.6740 -4.0669 2.5831 10 6 2.2742 -4.6149 3.8793 11 9 2.0555 -3.7753 4.9768 12 6 1.9189 -6.0867 4.1488 13 6 3.1795 -6.4556 3.3489 14 1 3.0002 -6.5701 2.2798 15 6 3.9656 -7.6234 3.9481 16 7 5.0739 -7.9745 3.0566 17 16 6.3046 -8.9373 3.6050 18 8 7.1911 -9.1184 2.5094 19 8 6.7126 -8.3948 4.8535 20 6 5.6131 -10.5203 3.9526 21 6 5.1213 -10.8411 5.1503 22 16 4.5198 -12.4936 5.1175 23 6 4.9920 -12.6637 3.4318 24 6 4.8011 -13.9037 2.5970 25 8 6.0771 -14.4357 2.2354 26 14 3.8544 -15.1732 3.5782 27 6 5.5443 -11.5269 3.0051 28 6 3.7345 -5.0757 3.7376 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6766 -0.2073 -2.1392 37 1 3.1300 -0.7209 -1.2495 38 1 2.6276 -2.2368 3.0828 39 1 2.0397 -4.6500 1.7379 40 1 0.5871 -4.1357 2.6288 41 1 0.9913 -6.4060 3.6736 42 1 1.9728 -6.3646 5.2013 43 1 3.3063 -8.4836 4.0643 44 1 4.3604 -7.3339 4.9220 45 1 5.0869 -7.6429 2.1451 46 1 5.0947 -10.1858 6.0083 47 1 4.2435 -13.6521 1.6948 48 1 6.6287 -14.6822 2.9904 49 1 3.6599 -16.4013 2.7662 50 1 4.5888 -15.5013 4.8266 51 1 5.9097 -11.4015 1.9965 52 1 4.2855 -5.0759 4.6781 53 1 4.2728 -4.5787 2.9306 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16500042_15065232.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:38:21 Heat of formation + Delta-G solvation = -176.049443 kcal Electronic energy + Delta-G solvation = -38529.101506 eV Core-core repulsion = 33150.738794 eV Total energy + Delta-G solvation = -5378.362713 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 437.127 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -48.68328 -41.85128 -40.20585 -39.50258 -38.45676 -38.33943 -37.67292 -37.01564 -36.20959 -35.44028 -34.69041 -31.84384 -29.67199 -28.37693 -28.31698 -27.23269 -27.10872 -26.80190 -24.91069 -23.45443 -22.89380 -21.48789 -21.26779 -20.48084 -19.90933 -19.20097 -19.14413 -18.51669 -18.08552 -17.88315 -17.70094 -17.47999 -17.29644 -16.77114 -16.65127 -16.47868 -16.40050 -15.87971 -15.79131 -15.59155 -15.45770 -15.21712 -15.11425 -14.95373 -14.54168 -14.44741 -14.23607 -14.15843 -13.99105 -13.84952 -13.69670 -13.38416 -13.37095 -13.33722 -13.21282 -13.10426 -12.95110 -12.93090 -12.88810 -12.88568 -12.52751 -12.50669 -12.37143 -12.34660 -12.12868 -12.01136 -11.56963 -11.52867 -11.41997 -11.24800 -11.15671 -10.82399 -10.43360 -10.34491 -10.21709 -9.80957 -5.10078 -0.76301 -0.46172 0.36489 0.60959 0.97357 1.06883 1.19405 1.49664 1.68762 1.85680 2.07941 2.69441 2.96918 3.13969 3.19924 3.23558 3.30069 3.36150 3.51790 3.59918 3.67978 3.72567 3.78088 3.92533 3.92948 4.06302 4.22512 4.30304 4.39858 4.42691 4.46973 4.55836 4.60539 4.63874 4.64778 4.69892 4.74875 4.75575 4.76130 4.81969 4.84975 4.86351 4.86527 4.92054 4.99691 5.04627 5.06068 5.13352 5.20228 5.26054 5.31936 5.42332 5.52670 6.06550 6.25677 6.34145 7.24269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.139 4.139 4 C -0.179 4.179 5 O -0.371 6.371 6 C 0.647 3.353 7 O -0.589 6.589 8 N -0.703 5.703 9 C 0.137 3.863 10 C 0.073 3.927 11 F -0.210 7.210 12 C -0.131 4.131 13 C -0.106 4.106 14 H 0.123 0.877 15 C 0.118 3.882 16 N -1.103 6.103 17 S 2.727 3.273 18 O -0.991 6.991 19 O -0.981 6.981 20 C -0.692 4.692 21 C -0.086 4.086 22 S 0.188 5.812 23 C -0.233 4.233 24 C -0.044 4.044 25 O -0.543 6.543 26 Si 0.726 3.274 27 C -0.055 4.055 28 C -0.155 4.155 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.415 0.585 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.104 0.896 42 H 0.114 0.886 43 H 0.095 0.905 44 H 0.086 0.914 45 H 0.429 0.571 46 H 0.207 0.793 47 H 0.140 0.860 48 H 0.388 0.612 49 H -0.275 1.275 50 H -0.260 1.260 51 H 0.150 0.850 52 H 0.101 0.899 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.622 -0.352 2.109 6.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.090 3.910 3 C -0.196 4.196 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.400 3.600 7 O -0.480 6.480 8 N -0.364 5.364 9 C 0.014 3.986 10 C 0.055 3.945 11 F -0.190 7.190 12 C -0.170 4.170 13 C -0.126 4.126 14 H 0.141 0.859 15 C -0.007 4.007 16 N -0.867 5.867 17 S 2.815 3.185 18 O -0.981 6.981 19 O -0.971 6.971 20 C -0.793 4.793 21 C -0.225 4.225 22 S 0.452 5.548 23 C -0.351 4.351 24 C -0.155 4.155 25 O -0.351 6.351 26 Si 0.627 3.373 27 C -0.084 4.084 28 C -0.192 4.192 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.251 0.749 39 H 0.122 0.878 40 H 0.099 0.901 41 H 0.123 0.877 42 H 0.132 0.868 43 H 0.113 0.887 44 H 0.104 0.896 45 H 0.266 0.734 46 H 0.224 0.776 47 H 0.157 0.843 48 H 0.237 0.763 49 H -0.200 1.200 50 H -0.186 1.186 51 H 0.167 0.833 52 H 0.120 0.880 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.027 -2.028 2.786 6.942 hybrid contribution 1.689 0.739 -0.980 2.088 sum -4.338 -1.288 1.805 4.872 Atomic orbital electron populations 1.22479 0.93962 1.03788 1.03519 1.22383 0.94526 0.92558 0.81492 1.21901 1.02461 0.90971 1.04238 1.22473 1.01651 1.02334 0.97200 1.86320 1.71535 1.23238 1.47416 1.18217 0.78675 0.80835 0.82241 1.90912 1.41980 1.70960 1.44150 1.44533 1.55568 1.12728 1.23533 1.21717 1.00938 0.79396 0.96546 1.22735 0.99191 0.89884 0.82731 1.92856 1.95953 1.74352 1.55885 1.23620 0.99546 0.90268 1.03545 1.22605 0.95317 0.92744 1.01885 0.85929 1.21566 0.87583 0.98668 0.92918 1.55211 1.40565 1.65777 1.25105 1.00732 0.72508 0.72829 0.72393 1.93567 1.62883 1.86725 1.54971 1.93571 1.80454 1.77638 1.45442 1.29819 1.23217 1.24658 1.01622 1.26271 0.95667 1.00552 0.99976 1.84380 1.55741 1.08159 1.06534 1.25090 1.10068 1.01165 0.98777 1.24669 0.90366 0.95825 1.04640 1.86621 1.27895 1.83241 1.37350 0.94500 0.86407 0.79059 0.77305 1.19663 0.97739 0.90712 1.00323 1.23849 0.94338 0.96750 1.04304 0.92091 0.89356 0.91608 0.91206 0.88217 0.91305 0.91523 0.89430 0.91933 0.74887 0.87827 0.90051 0.87737 0.86793 0.88668 0.89609 0.73352 0.77602 0.84291 0.76278 1.20028 1.18553 0.83255 0.88033 0.89595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.50 8.37 71.98 0.60 0.10 16 2 C 0.13 0.33 1.13 -10.79 -0.01 0.32 16 3 C -0.14 0.28 8.85 71.98 0.64 0.92 16 4 C -0.18 -0.42 8.37 71.98 0.60 0.18 16 5 O -0.37 -2.04 9.94 -55.51 -0.55 -2.59 16 6 C 0.65 3.85 8.06 129.79 1.05 4.89 16 7 O -0.59 -6.00 11.88 19.81 0.24 -5.77 16 8 N -0.70 -0.18 5.47 -590.85 -3.23 -3.42 16 9 C 0.14 -0.52 5.25 86.38 0.45 -0.07 16 10 C 0.07 -0.45 1.83 -10.27 -0.02 -0.47 16 11 F -0.21 0.01 16.82 44.97 0.76 0.76 16 12 C -0.13 1.43 7.13 31.12 0.22 1.66 16 13 C -0.11 1.21 3.44 -10.29 -0.04 1.18 16 14 H 0.12 -1.69 7.64 -2.38 -0.02 -1.71 16 15 C 0.12 -1.25 6.06 86.38 0.52 -0.73 16 16 N -1.10 7.97 6.00 -187.48 -1.12 6.85 16 17 S 2.73 1.30 5.80 -56.49 -0.33 0.97 16 18 O -0.99 -8.28 17.63 -128.00 -2.26 -10.54 16 19 O -0.98 -5.52 17.11 -128.00 -2.19 -7.71 16 20 C -0.69 1.08 5.86 21.21 0.12 1.21 16 21 C -0.09 0.41 10.70 66.72 0.71 1.13 16 22 S 0.19 -0.98 20.60 -56.49 -1.16 -2.14 16 23 C -0.23 0.50 5.70 24.59 0.14 0.64 16 24 C -0.04 0.11 2.96 71.23 0.21 0.32 16 25 O -0.54 -0.82 12.88 -148.98 -1.92 -2.74 16 26 Si 0.73 -2.90 30.98 68.60 2.13 -0.77 16 27 C -0.06 0.00 9.59 21.22 0.20 0.21 16 28 C -0.15 1.21 7.09 31.10 0.22 1.43 16 29 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.09 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.06 0.50 5.88 -2.39 -0.01 0.49 16 32 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 33 H 0.10 -0.54 8.14 -2.38 -0.02 -0.56 16 34 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 35 H 0.07 0.47 5.88 -2.39 -0.01 0.45 16 36 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16 37 H 0.06 0.11 8.14 -2.38 -0.02 0.09 16 38 H 0.41 -0.70 8.30 -92.71 -0.77 -1.47 16 39 H 0.10 -0.60 7.35 -2.39 -0.02 -0.62 16 40 H 0.08 -0.21 8.14 -2.39 -0.02 -0.22 16 41 H 0.10 -1.36 8.10 -2.39 -0.02 -1.38 16 42 H 0.11 -1.34 8.10 -2.39 -0.02 -1.36 16 43 H 0.10 -1.38 8.14 -2.39 -0.02 -1.40 16 44 H 0.09 -0.85 7.45 -2.39 -0.02 -0.87 16 45 H 0.43 -4.28 8.64 -96.75 -0.84 -5.12 16 46 H 0.21 -1.98 8.00 -2.91 -0.02 -2.01 16 47 H 0.14 -0.69 7.96 -2.39 -0.02 -0.71 16 48 H 0.39 -1.52 8.70 -74.06 -0.64 -2.17 16 49 H -0.27 -0.80 7.11 99.48 0.71 -0.09 16 50 H -0.26 0.18 7.11 99.48 0.71 0.89 16 51 H 0.15 0.13 7.97 -2.91 -0.02 0.11 16 52 H 0.10 -0.68 7.89 -2.39 -0.02 -0.70 16 53 H 0.09 -0.65 8.10 -2.39 -0.02 -0.67 16 Total: 0.00 -28.35 458.94 -5.25 -33.60 By element: Atomic # 1 Polarization: -18.18 SS G_CDS: -1.23 Total: -19.41 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: 5.63 Total: 12.91 kcal Atomic # 7 Polarization: 7.79 SS G_CDS: -4.36 Total: 3.43 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -6.68 Total: -29.35 kcal Atomic # 9 Polarization: 0.01 SS G_CDS: 0.76 Total: 0.76 kcal Atomic # 14 Polarization: -2.90 SS G_CDS: 2.13 Total: -0.77 kcal Atomic # 16 Polarization: 0.32 SS G_CDS: -1.49 Total: -1.17 kcal Total: -28.35 -5.25 -33.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16500042_15065232.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.449 kcal (2) G-P(sol) polarization free energy of solvation -28.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds