Wall clock time and date at job start Mon Mar 8 2021 11:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45193 * 109.47272 * 2 1 4 4 C 1.34235 * 117.00254 * 180.02562 * 3 2 1 5 5 O 1.20830 * 119.99329 * 359.97438 * 4 3 2 6 6 C 1.50692 * 120.00215 * 179.97438 * 4 3 2 7 7 H 1.09004 * 112.90785 * 311.24594 * 6 4 3 8 8 C 1.53784 * 113.61665 * 82.49987 * 6 4 3 9 9 C 1.53779 * 87.08045 * 89.11607 * 8 6 4 10 10 F 1.39897 * 113.61581 * 270.88458 * 9 8 6 11 11 C 1.53003 * 113.69268 * 139.99100 * 9 8 6 12 12 N 1.46503 * 109.46622 * 87.46383 * 11 9 8 13 13 S 1.65601 * 119.99720 * 165.00265 * 12 11 9 14 14 O 1.42102 * 106.40459 * 178.53794 * 13 12 11 15 15 O 1.42094 * 106.40406 * 311.45780 * 13 12 11 16 16 C 1.76204 * 107.21856 * 64.99752 * 13 12 11 17 17 C 1.38229 * 120.00050 * 269.72849 * 16 13 12 18 18 C 1.38242 * 119.99683 * 179.78799 * 17 16 13 19 19 C 1.38232 * 120.00150 * 0.46321 * 18 17 16 20 20 C 1.50699 * 119.99868 * 179.78959 * 19 18 17 21 21 O 1.42899 * 109.47143 * 244.97615 * 20 19 18 22 22 Si 1.86300 * 109.47312 * 4.97815 * 20 19 18 23 23 C 1.38239 * 119.99792 * 359.76528 * 19 18 17 24 24 C 1.38229 * 119.99940 * 0.02696 * 23 19 18 25 25 C 1.53779 * 87.08402 * 25.43458 * 9 8 6 26 26 H 1.09004 * 109.47146 * 300.00334 * 1 2 3 27 27 H 1.09002 * 109.46649 * 59.99804 * 1 2 3 28 28 H 1.08991 * 109.47117 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47323 * 239.99608 * 2 1 3 30 30 H 1.09007 * 109.46549 * 119.99745 * 2 1 3 31 31 H 1.09002 * 113.61478 * 203.66571 * 8 6 4 32 32 H 1.09004 * 113.61162 * 334.56749 * 8 6 4 33 33 H 1.08996 * 109.47332 * 207.46465 * 11 9 8 34 34 H 1.08996 * 109.47070 * 327.47082 * 11 9 8 35 35 H 0.96999 * 120.00135 * 344.99770 * 12 11 9 36 36 H 1.07997 * 120.00090 * 359.97438 * 17 16 13 37 37 H 1.07999 * 119.99879 * 180.25056 * 18 17 16 38 38 H 1.09004 * 109.46585 * 124.97921 * 20 19 18 39 39 H 0.96696 * 114.00070 * 60.00046 * 21 20 19 40 40 H 1.48493 * 109.99815 * 58.67944 * 22 20 19 41 41 H 1.48496 * 109.99731 * 179.97438 * 22 20 19 42 42 H 1.08003 * 119.99594 * 179.97438 * 23 19 18 43 43 H 1.08003 * 119.99449 * 179.97438 * 24 23 19 44 44 H 1.08997 * 113.61646 * 220.02209 * 25 9 8 45 45 H 1.08998 * 113.69354 * 89.12517 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9208 2.9373 -0.0012 7 1 3.4710 3.5822 -0.7561 8 6 3.9869 3.5773 1.3956 9 6 5.3810 2.9432 1.5340 10 9 5.3587 1.6526 2.0733 11 6 6.4057 3.8535 2.2140 12 7 6.3333 3.6712 3.6658 13 16 7.5545 4.2334 4.6328 14 8 7.1761 3.9372 5.9701 15 8 8.7687 3.7801 4.0501 16 6 7.5620 5.9900 4.4952 17 6 8.3321 6.6041 3.5254 18 6 8.3345 7.9821 3.4147 19 6 7.5743 8.7463 4.2801 20 6 7.5807 10.2487 4.1625 21 8 8.1601 10.8161 5.3391 22 14 8.5813 10.7508 2.6734 23 6 6.8079 8.1324 5.2531 24 6 6.8021 6.7543 5.3609 25 6 5.4584 2.9680 -0.0016 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 4.0028 4.6670 1.3763 32 1 3.2533 3.1760 2.0949 33 1 7.4063 3.5984 1.8651 34 1 6.1888 4.8928 1.9671 35 1 5.5701 3.2212 4.0606 36 1 8.9294 6.0072 2.8522 37 1 8.9330 8.4617 2.6544 38 1 6.5579 10.6087 4.0512 39 1 9.0721 10.5388 5.5014 40 1 8.0076 10.1411 1.4469 41 1 8.5948 12.2302 2.5459 42 1 6.2143 8.7295 5.9295 43 1 6.2036 6.2747 6.1214 44 1 5.9127 2.0748 -0.4304 45 1 5.8766 3.8905 -0.4043 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16501620_13421422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:43:40 Heat of formation + Delta-G solvation = -175.493733 kcal Electronic energy + Delta-G solvation = -32349.599011 eV Core-core repulsion = 27569.684537 eV Total energy + Delta-G solvation = -4779.914475 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.112 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -48.81285 -41.75222 -40.81788 -39.40717 -38.30065 -37.84049 -37.44766 -36.90030 -36.01224 -33.13110 -32.73649 -32.33537 -29.53348 -27.35270 -27.31766 -26.01550 -24.23039 -23.83907 -23.11155 -22.44407 -20.88483 -20.49914 -19.37218 -19.00239 -18.59208 -18.29356 -17.86781 -17.61790 -17.43531 -17.03900 -16.94573 -16.65361 -16.29286 -16.19963 -15.94347 -15.74172 -15.29908 -15.21697 -14.93618 -14.82272 -14.64480 -14.50027 -14.22615 -14.11676 -13.91938 -13.83641 -13.60027 -13.44697 -13.14166 -13.10064 -13.07384 -12.92319 -12.74716 -12.72098 -12.53771 -12.49108 -12.07813 -11.90966 -11.65655 -11.53807 -11.52155 -11.40528 -10.82583 -10.74065 -10.48027 -10.27995 -5.20636 -0.80184 -0.45869 0.05579 1.06496 1.14031 1.44602 1.53302 1.76593 1.80415 2.22384 2.66394 2.75726 2.86173 3.02455 3.14760 3.18177 3.21830 3.34325 3.37361 3.62489 3.66663 3.72718 3.93303 3.96867 3.98415 4.02652 4.05220 4.17699 4.22420 4.23444 4.25367 4.27641 4.39220 4.42247 4.46069 4.53652 4.68393 4.69892 4.71798 4.77894 4.81300 4.85720 4.96702 4.99379 5.11592 5.45106 5.56008 5.71430 6.34355 6.74042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.356 6.356 4 C 0.474 3.526 5 O -0.488 6.488 6 C -0.113 4.113 7 H 0.126 0.874 8 C -0.138 4.138 9 C 0.086 3.914 10 F -0.171 7.171 11 C 0.108 3.892 12 N -1.114 6.114 13 S 2.697 3.303 14 O -0.951 6.951 15 O -0.949 6.949 16 C -0.675 4.675 17 C -0.017 4.017 18 C -0.137 4.137 19 C -0.063 4.063 20 C -0.078 4.078 21 O -0.535 6.535 22 Si 0.689 3.311 23 C -0.113 4.113 24 C -0.016 4.016 25 C -0.136 4.136 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.120 0.880 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.423 0.577 36 H 0.146 0.854 37 H 0.138 0.862 38 H 0.119 0.881 39 H 0.382 0.618 40 H -0.255 1.255 41 H -0.251 1.251 42 H 0.137 0.863 43 H 0.144 0.856 44 H 0.103 0.897 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.234 4.423 -4.045 6.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.274 6.274 4 C 0.315 3.685 5 O -0.374 6.374 6 C -0.133 4.133 7 H 0.144 0.856 8 C -0.176 4.176 9 C 0.065 3.935 10 F -0.151 7.151 11 C -0.019 4.019 12 N -0.874 5.874 13 S 2.786 3.214 14 O -0.941 6.941 15 O -0.939 6.939 16 C -0.762 4.762 17 C -0.036 4.036 18 C -0.155 4.155 19 C -0.064 4.064 20 C -0.189 4.189 21 O -0.341 6.341 22 Si 0.590 3.410 23 C -0.132 4.132 24 C -0.035 4.035 25 C -0.174 4.174 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.138 0.862 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.259 0.741 36 H 0.164 0.836 37 H 0.155 0.845 38 H 0.136 0.864 39 H 0.229 0.771 40 H -0.179 1.179 41 H -0.176 1.176 42 H 0.155 0.845 43 H 0.162 0.838 44 H 0.122 0.878 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.905 4.342 -4.344 6.430 hybrid contribution -1.237 0.068 0.212 1.256 sum -3.142 4.410 -4.132 6.811 Atomic orbital electron populations 1.21823 0.92285 1.03316 1.03623 1.23096 0.95564 0.79633 1.02868 1.86472 1.24036 1.32930 1.83919 1.22889 0.80932 0.91667 0.72997 1.90724 1.60365 1.42527 1.43799 1.21987 0.97649 0.92066 1.01552 0.85638 1.23673 0.96337 1.02425 0.95172 1.22041 0.96677 0.80281 0.94457 1.92951 1.97178 1.38092 1.86876 1.21819 1.01107 0.99550 0.79416 1.55409 1.41607 1.74292 1.16140 1.01917 0.73096 0.73535 0.72881 1.93629 1.82982 1.83641 1.33833 1.93615 1.42881 1.79052 1.78329 1.31011 1.10697 1.26980 1.07505 1.20933 0.93405 0.95071 0.94189 1.21150 1.00265 0.94159 0.99976 1.20765 0.94581 0.96515 0.94495 1.25232 1.04454 0.90156 0.99010 1.86540 1.32856 1.70879 1.43792 0.94629 0.89410 0.81409 0.75524 1.21206 0.99328 0.94400 0.98293 1.21017 0.93552 0.94137 0.94775 1.23605 0.93616 1.06240 0.93904 0.91380 0.91373 0.89939 0.91041 0.91001 0.86158 0.88971 0.88378 0.89333 0.74129 0.83587 0.84500 0.86362 0.77073 1.17932 1.17570 0.84510 0.83839 0.87798 0.86216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.26 10.29 37.16 0.38 0.64 16 2 C 0.06 0.02 6.19 37.16 0.23 0.25 16 3 O -0.36 -0.50 10.22 -39.27 -0.40 -0.90 16 4 C 0.47 0.79 6.92 36.00 0.25 1.04 16 5 O -0.49 -2.35 14.47 -18.75 -0.27 -2.63 16 6 C -0.11 0.25 4.46 -90.96 -0.41 -0.16 16 7 H 0.13 -0.56 8.14 -51.93 -0.42 -0.98 16 8 C -0.14 0.48 7.11 -25.92 -0.18 0.30 16 9 C 0.09 -0.14 1.69 -89.81 -0.15 -0.29 16 10 F -0.17 -0.43 15.11 2.25 0.03 -0.40 16 11 C 0.11 -0.33 5.98 -4.04 -0.02 -0.35 16 12 N -1.11 1.82 5.81 -10.61 -0.06 1.76 16 13 S 2.70 1.86 5.74 -107.50 -0.62 1.24 16 14 O -0.95 -3.64 17.28 -57.17 -0.99 -4.63 16 15 O -0.95 -3.26 16.75 -57.17 -0.96 -4.21 16 16 C -0.68 0.45 5.95 -39.59 -0.24 0.22 16 17 C -0.02 0.03 9.52 -39.58 -0.38 -0.35 16 18 C -0.14 0.32 8.67 -39.58 -0.34 -0.03 16 19 C -0.06 0.10 5.35 -104.62 -0.56 -0.46 16 20 C -0.08 0.15 2.80 36.00 0.10 0.25 16 21 O -0.54 0.59 12.83 -35.23 -0.45 0.14 16 22 Si 0.69 -1.88 29.80 -169.99 -5.07 -6.94 16 23 C -0.11 0.11 9.69 -39.58 -0.38 -0.27 16 24 C -0.02 0.01 9.52 -39.59 -0.38 -0.37 16 25 C -0.14 0.38 6.92 -25.92 -0.18 0.20 16 26 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 27 H 0.07 -0.12 8.14 -51.93 -0.42 -0.54 16 28 H 0.08 -0.23 8.14 -51.93 -0.42 -0.66 16 29 H 0.07 0.02 8.13 -51.93 -0.42 -0.40 16 30 H 0.07 0.05 8.14 -51.92 -0.42 -0.37 16 31 H 0.12 -0.75 7.90 -51.93 -0.41 -1.16 16 32 H 0.09 -0.25 8.09 -51.93 -0.42 -0.67 16 33 H 0.10 -0.30 7.75 -51.93 -0.40 -0.71 16 34 H 0.09 -0.54 7.85 -51.93 -0.41 -0.95 16 35 H 0.42 -0.97 8.46 -34.47 -0.29 -1.27 16 36 H 0.15 -0.49 7.61 -52.49 -0.40 -0.89 16 37 H 0.14 -0.63 4.91 -52.49 -0.26 -0.88 16 38 H 0.12 -0.22 7.96 -51.93 -0.41 -0.63 16 39 H 0.38 -1.83 8.70 45.56 0.40 -1.44 16 40 H -0.25 0.22 7.11 56.52 0.40 0.62 16 41 H -0.25 -0.20 7.11 56.52 0.40 0.21 16 42 H 0.14 -0.24 8.06 -52.48 -0.42 -0.66 16 43 H 0.14 -0.24 7.62 -52.48 -0.40 -0.64 16 44 H 0.10 -0.07 7.43 -51.93 -0.39 -0.45 16 45 H 0.12 -0.73 8.10 -51.93 -0.42 -1.15 16 LS Contribution 392.58 15.07 5.92 5.92 Total: 0.00 -13.09 392.58 -11.09 -24.18 By element: Atomic # 1 Polarization: -8.19 SS G_CDS: -5.97 Total: -14.16 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: -2.26 Total: 0.63 kcal Atomic # 7 Polarization: 1.82 SS G_CDS: -0.06 Total: 1.76 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -3.07 Total: -12.23 kcal Atomic # 9 Polarization: -0.43 SS G_CDS: 0.03 Total: -0.40 kcal Atomic # 14 Polarization: -1.88 SS G_CDS: -5.07 Total: -6.94 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -0.62 Total: 1.24 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -13.09 -11.09 -24.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16501620_13421422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.309 kcal (2) G-P(sol) polarization free energy of solvation -13.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds