Wall clock time and date at job start Mon Mar 8 2021 11:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45197 * 109.47390 * 2 1 4 4 C 1.34228 * 117.00422 * 179.97438 * 3 2 1 5 5 O 1.20832 * 119.99661 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00193 * 179.97438 * 4 3 2 7 7 H 1.09002 * 112.84782 * 50.33763 * 6 4 3 8 8 C 1.53786 * 113.61519 * 181.53173 * 6 4 3 9 9 C 1.53783 * 87.08050 * 140.06465 * 8 6 4 10 10 F 1.39895 * 113.61426 * 220.01656 * 9 8 6 11 11 C 1.53005 * 113.61139 * 89.20025 * 9 8 6 12 12 N 1.46497 * 109.46839 * 179.97438 * 11 9 8 13 13 S 1.65598 * 119.99528 * 165.00125 * 12 11 9 14 14 O 1.42104 * 106.40088 * 178.53921 * 13 12 11 15 15 O 1.42096 * 106.40491 * 311.46183 * 13 12 11 16 16 C 1.76200 * 107.22126 * 65.00233 * 13 12 11 17 17 C 1.33383 * 125.20587 * 179.71472 * 16 13 12 18 18 C 1.50701 * 122.54239 * 0.02562 * 17 16 13 19 19 O 1.42897 * 109.46963 * 74.99665 * 18 17 16 20 20 Si 1.86298 * 109.47334 * 194.99677 * 18 17 16 21 21 C 1.38427 * 114.92072 * 179.85767 * 17 16 13 22 22 C 1.33393 * 114.92037 * 0.43504 * 21 17 16 23 23 S 1.75879 * 109.59265 * 359.76974 * 22 21 17 24 24 C 1.53781 * 113.61630 * 279.14121 * 6 4 3 25 25 H 1.09000 * 109.46631 * 59.99825 * 1 2 3 26 26 H 1.08996 * 109.46994 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46790 * 300.00068 * 1 2 3 28 28 H 1.08997 * 109.47217 * 239.99615 * 2 1 3 29 29 H 1.09007 * 109.47021 * 119.99381 * 2 1 3 30 30 H 1.08992 * 113.61675 * 254.61723 * 8 6 4 31 31 H 1.09000 * 113.60973 * 25.52011 * 8 6 4 32 32 H 1.08994 * 109.46944 * 300.00084 * 11 9 8 33 33 H 1.09008 * 109.46845 * 59.99940 * 11 9 8 34 34 H 0.96996 * 120.00078 * 345.00061 * 12 11 9 35 35 H 1.08999 * 109.46416 * 314.99653 * 18 17 16 36 36 H 0.96702 * 114.00524 * 60.00068 * 19 18 17 37 37 H 1.48498 * 109.99827 * 58.67905 * 20 18 17 38 38 H 1.48494 * 109.99929 * 179.97438 * 20 18 17 39 39 H 1.08003 * 122.53983 * 180.20165 * 21 17 16 40 40 H 1.08006 * 125.20250 * 179.78808 * 22 21 17 41 41 H 1.08999 * 113.61567 * 334.48200 * 24 6 4 42 42 H 1.08998 * 113.61196 * 105.38554 * 24 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.4898 3.5740 0.7727 8 6 5.4579 2.9682 -0.0370 9 6 5.3324 4.1535 -1.0087 10 9 6.2602 4.1208 -2.0552 11 6 5.2711 5.5139 -0.3113 12 7 5.1533 6.5731 -1.3165 13 16 4.6973 8.0988 -0.8620 14 8 4.7102 8.8898 -2.0425 15 8 3.5474 7.9462 -0.0413 16 6 5.9695 8.7356 0.1775 17 6 5.9691 9.9447 0.7406 18 6 4.8458 10.9300 0.5446 19 8 3.7168 10.5259 1.3218 20 14 5.4017 12.6223 1.0901 21 6 7.0771 10.2246 1.5218 22 6 7.9815 9.2462 1.5857 23 16 7.4379 7.8770 0.6250 24 6 3.9501 3.5914 -1.3915 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 5.9124 3.2326 0.9178 31 1 5.9017 2.0800 -0.4867 32 1 4.4063 5.5437 0.3515 33 1 6.1803 5.6652 0.2706 34 1 5.3424 6.3807 -2.2482 35 1 4.5693 10.9606 -0.5093 36 1 3.8905 10.4767 2.2718 37 1 6.5948 13.0406 0.3112 38 1 4.3030 13.6032 0.9012 39 1 7.2017 11.1655 2.0374 40 1 8.9061 9.2883 2.1424 41 1 3.9825 2.8733 -2.2109 42 1 3.1882 4.3585 -1.5295 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16501620_13652106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:43:42 Heat of formation + Delta-G solvation = -172.651756 kcal Electronic energy + Delta-G solvation = -31188.822624 eV Core-core repulsion = 26498.183633 eV Total energy + Delta-G solvation = -4690.638991 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.069 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -48.80643 -41.88908 -40.04940 -39.62976 -38.44234 -37.65777 -37.18217 -37.03503 -35.95162 -32.69354 -31.43617 -29.19324 -28.08482 -27.13136 -26.32670 -24.32104 -23.93274 -22.30439 -21.72135 -20.45498 -20.05081 -19.73837 -19.19076 -18.65210 -18.21404 -18.01474 -17.72573 -17.43375 -16.82164 -16.67604 -16.43906 -16.32963 -16.02204 -15.86153 -15.48438 -15.36858 -15.13048 -14.96289 -14.62114 -14.26669 -14.07018 -13.95500 -13.79518 -13.67951 -13.63691 -13.57948 -13.38376 -13.27030 -13.00391 -12.74933 -12.71268 -12.55079 -12.50335 -12.43061 -12.31669 -12.12877 -11.79155 -11.58678 -11.48904 -11.44033 -10.88056 -10.60837 -10.39987 -9.61741 -5.09321 -0.89307 -0.66349 0.20837 0.66470 1.01148 1.15132 1.29646 1.57199 1.63174 1.74144 1.93951 2.42845 2.86565 2.94135 3.05601 3.24586 3.31991 3.44168 3.44764 3.51840 3.80836 3.95830 3.99574 4.02233 4.06762 4.14477 4.17199 4.25138 4.28533 4.30629 4.41706 4.51135 4.65922 4.72020 4.74291 4.80097 4.83785 4.88151 4.90714 5.09331 5.11309 5.13130 5.40712 5.70696 6.60857 6.68315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.360 6.360 4 C 0.474 3.526 5 O -0.535 6.535 6 C -0.108 4.108 7 H 0.164 0.836 8 C -0.127 4.127 9 C 0.093 3.907 10 F -0.199 7.199 11 C 0.104 3.896 12 N -1.111 6.111 13 S 2.727 3.273 14 O -0.989 6.989 15 O -0.950 6.950 16 C -0.799 4.799 17 C 0.000 4.000 18 C -0.124 4.124 19 O -0.539 6.539 20 Si 0.820 3.180 21 C -0.168 4.168 22 C -0.147 4.147 23 S 0.222 5.778 24 C -0.140 4.140 25 H 0.067 0.933 26 H 0.096 0.904 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.124 0.876 31 H 0.101 0.899 32 H 0.124 0.876 33 H 0.101 0.899 34 H 0.431 0.569 35 H 0.095 0.905 36 H 0.400 0.600 37 H -0.276 1.276 38 H -0.292 1.292 39 H 0.188 0.812 40 H 0.215 0.785 41 H 0.098 0.902 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.623 -0.275 7.417 8.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.020 4.020 3 O -0.276 6.276 4 C 0.318 3.682 5 O -0.425 6.425 6 C -0.127 4.127 7 H 0.182 0.818 8 C -0.165 4.165 9 C 0.073 3.927 10 F -0.180 7.180 11 C -0.022 4.022 12 N -0.875 5.875 13 S 2.815 3.185 14 O -0.979 6.979 15 O -0.940 6.940 16 C -1.002 5.002 17 C -0.019 4.019 18 C -0.234 4.234 19 O -0.348 6.348 20 Si 0.722 3.278 21 C -0.197 4.197 22 C -0.284 4.284 23 S 0.488 5.512 24 C -0.178 4.178 25 H 0.086 0.914 26 H 0.114 0.886 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.142 0.858 31 H 0.120 0.880 32 H 0.142 0.858 33 H 0.119 0.881 34 H 0.268 0.732 35 H 0.112 0.888 36 H 0.251 0.749 37 H -0.202 1.202 38 H -0.219 1.219 39 H 0.205 0.795 40 H 0.232 0.768 41 H 0.117 0.883 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 3.529 -0.820 6.202 7.183 hybrid contribution 0.019 0.384 -0.823 0.908 sum 3.548 -0.436 5.379 6.458 Atomic orbital electron populations 1.21833 0.90816 1.04252 1.03741 1.23265 0.96857 0.79269 1.02577 1.86528 1.24199 1.33550 1.83329 1.23792 0.80597 0.92676 0.71148 1.90683 1.61123 1.44082 1.46603 1.22541 0.97344 0.90628 1.02175 0.81829 1.23640 0.93475 0.97493 1.01893 1.22392 0.88262 0.95379 0.86623 1.92866 1.67992 1.97383 1.59718 1.22026 1.05989 0.83790 0.90382 1.55259 1.88148 1.25456 1.18662 1.00786 0.73212 0.71897 0.72617 1.93579 1.87232 1.68860 1.48266 1.93615 1.45130 1.85241 1.69972 1.35425 1.23777 1.11640 1.29311 1.19263 0.96668 0.92513 0.93418 1.25760 0.88140 1.09866 0.99621 1.86639 1.32505 1.91387 1.24235 0.93664 0.76838 0.69172 0.88128 1.20455 0.93293 1.03072 1.02881 1.26672 1.04494 0.95741 1.01541 1.84009 1.07932 1.16103 1.43129 1.23720 0.97025 1.01144 0.95925 0.91398 0.88559 0.91160 0.91461 0.91116 0.85788 0.88045 0.85759 0.88116 0.73187 0.88771 0.74899 1.20231 1.21930 0.79517 0.76849 0.88310 0.87129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.51 10.29 71.98 0.74 1.25 16 2 C 0.05 0.04 6.19 71.98 0.45 0.48 16 3 O -0.36 -1.04 10.22 -51.40 -0.53 -1.57 16 4 C 0.47 1.40 7.48 71.24 0.53 1.93 16 5 O -0.54 -4.86 15.66 21.95 0.34 -4.52 16 6 C -0.11 0.45 3.90 -11.01 -0.04 0.40 16 7 H 0.16 -1.58 7.66 -2.39 -0.02 -1.59 16 8 C -0.13 0.62 6.88 31.12 0.21 0.83 16 9 C 0.09 -0.37 1.90 -10.17 -0.02 -0.39 16 10 F -0.20 -0.17 16.66 44.97 0.75 0.58 16 11 C 0.10 -0.57 5.55 86.38 0.48 -0.09 16 12 N -1.11 1.19 5.77 -187.49 -1.08 0.11 16 13 S 2.73 16.43 5.07 -56.49 -0.29 16.15 16 14 O -0.99 -13.32 17.48 -128.00 -2.24 -15.56 16 15 O -0.95 -9.60 16.93 -125.86 -2.13 -11.73 16 16 C -0.80 -1.72 6.46 66.72 0.43 -1.29 16 17 C 0.00 0.00 5.13 -20.92 -0.11 -0.11 16 18 C -0.12 -0.39 2.33 71.24 0.17 -0.22 16 19 O -0.54 -1.93 12.32 -148.36 -1.83 -3.76 16 20 Si 0.82 -2.10 30.25 68.60 2.08 -0.03 16 21 C -0.17 0.99 8.74 21.22 0.19 1.17 16 22 C -0.15 1.19 11.23 66.72 0.75 1.94 16 23 S 0.22 -1.03 21.09 -56.49 -1.19 -2.23 16 24 C -0.14 0.52 7.11 31.21 0.22 0.74 16 25 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 26 H 0.10 -0.61 8.14 -2.39 -0.02 -0.63 16 27 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 28 H 0.07 0.08 8.13 -2.39 -0.02 0.06 16 29 H 0.07 0.05 8.13 -2.38 -0.02 0.03 16 30 H 0.12 -1.25 8.10 -2.39 -0.02 -1.27 16 31 H 0.10 -0.07 7.46 -2.39 -0.02 -0.09 16 32 H 0.12 -1.03 6.96 -2.39 -0.02 -1.05 16 33 H 0.10 -0.92 6.25 -2.38 -0.01 -0.93 16 34 H 0.43 -1.02 8.19 -96.75 -0.79 -1.82 16 35 H 0.09 0.77 7.23 -2.39 -0.02 0.75 16 36 H 0.40 -2.71 8.70 -74.06 -0.64 -3.35 16 37 H -0.28 -0.40 7.11 99.48 0.71 0.31 16 38 H -0.29 -1.40 7.11 99.48 0.71 -0.69 16 39 H 0.19 -2.33 5.73 -2.91 -0.02 -2.35 16 40 H 0.21 -3.25 8.06 -2.91 -0.02 -3.28 16 41 H 0.10 -0.20 8.09 -2.39 -0.02 -0.22 16 42 H 0.11 -0.59 8.11 -2.39 -0.02 -0.61 16 Total: 0.00 -30.69 380.08 -2.42 -33.11 By element: Atomic # 1 Polarization: -16.91 SS G_CDS: -0.30 Total: -17.21 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 4.00 Total: 6.65 kcal Atomic # 7 Polarization: 1.19 SS G_CDS: -1.08 Total: 0.11 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -6.38 Total: -37.13 kcal Atomic # 9 Polarization: -0.17 SS G_CDS: 0.75 Total: 0.58 kcal Atomic # 14 Polarization: -2.10 SS G_CDS: 2.08 Total: -0.03 kcal Atomic # 16 Polarization: 15.40 SS G_CDS: -1.48 Total: 13.92 kcal Total: -30.69 -2.42 -33.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16501620_13652106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.539 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds