Wall clock time and date at job start Mon Mar 8 2021 11:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45203 * 109.46924 * 2 1 4 4 C 1.34229 * 116.99688 * 180.02562 * 3 2 1 5 5 O 1.20820 * 119.99913 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99548 * 180.02562 * 4 3 2 7 7 H 1.09002 * 112.85271 * 309.66689 * 6 4 3 8 8 C 1.53788 * 113.61404 * 80.86063 * 6 4 3 9 9 C 1.54055 * 86.98135 * 89.16112 * 8 6 4 10 10 F 1.39904 * 113.61305 * 270.88195 * 9 8 6 11 11 C 1.52997 * 113.69509 * 139.98969 * 9 8 6 12 12 N 1.46502 * 109.47131 * 87.46213 * 11 9 8 13 13 S 1.65597 * 120.00104 * 163.96867 * 12 11 9 14 14 O 1.42100 * 106.40556 * 178.48910 * 13 12 11 15 15 O 1.42100 * 106.40322 * 311.40589 * 13 12 11 16 16 C 1.76205 * 107.21777 * 64.94752 * 13 12 11 17 17 C 1.33382 * 122.53755 * 66.79571 * 16 13 12 18 18 C 1.50699 * 125.20665 * 0.03070 * 17 16 13 19 19 O 1.42900 * 109.46951 * 312.94451 * 18 17 16 20 20 Si 1.86294 * 109.47194 * 192.94124 * 18 17 16 21 21 S 1.75891 * 109.59104 * 179.90431 * 17 16 13 22 22 C 1.75880 * 90.96970 * 0.30535 * 21 17 16 23 23 C 1.33391 * 109.59819 * 359.82795 * 22 21 17 24 24 C 1.53783 * 87.08095 * 25.43046 * 9 8 6 25 25 H 1.09005 * 109.46831 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46973 * 299.99720 * 1 2 3 27 27 H 1.08994 * 109.46860 * 60.00103 * 1 2 3 28 28 H 1.08994 * 109.46860 * 119.99897 * 2 1 3 29 29 H 1.08999 * 109.46973 * 240.00280 * 2 1 3 30 30 H 1.08997 * 113.61497 * 203.66224 * 8 6 4 31 31 H 1.08993 * 113.61507 * 334.56750 * 8 6 4 32 32 H 1.08997 * 109.47187 * 207.46477 * 11 9 8 33 33 H 1.09004 * 109.47311 * 327.46938 * 11 9 8 34 34 H 0.97002 * 120.00349 * 343.97332 * 12 11 9 35 35 H 1.08999 * 109.47027 * 72.94168 * 18 17 16 36 36 H 0.96698 * 113.99755 * 300.57901 * 19 18 17 37 37 H 1.48497 * 110.00101 * 58.68068 * 20 18 17 38 38 H 1.48503 * 109.99984 * 180.02562 * 20 18 17 39 39 H 1.08005 * 125.20220 * 179.79124 * 22 21 17 40 40 H 1.08000 * 122.54745 * 180.02562 * 23 22 21 41 41 H 1.08999 * 113.61099 * 220.02190 * 24 9 8 42 42 H 1.08994 * 113.68977 * 89.12916 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.4896 3.5742 -0.7726 8 6 3.9500 3.5915 1.3916 9 6 5.3428 2.9579 1.5704 10 9 5.3071 1.6722 2.1210 11 6 6.3504 3.8746 2.2668 12 7 6.2425 3.7058 3.7181 13 16 7.4516 4.2544 4.7077 14 8 7.0377 3.9773 6.0386 15 8 8.6701 3.7738 4.1568 16 6 7.4946 6.0093 4.5552 17 6 6.5017 6.7910 4.9821 18 6 5.2349 6.3060 5.6387 19 8 4.6938 5.2192 4.8849 20 14 3.9963 7.6961 5.7011 21 16 6.8988 8.4749 4.6649 22 6 8.4321 8.0080 3.9408 23 6 8.5587 6.6806 3.9779 24 6 5.4578 2.9684 0.0369 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.9665 4.6809 1.3618 31 1 3.1983 3.1971 2.0753 32 1 7.3593 3.6165 1.9451 33 1 6.1397 4.9116 2.0051 34 1 5.4628 3.2727 4.0994 35 1 5.4562 5.9708 6.6519 36 1 4.4812 5.4434 3.9687 37 1 3.7101 8.1835 4.3279 38 1 2.7427 7.2307 6.3469 39 1 9.1597 8.6915 3.5285 40 1 9.4257 6.1685 3.5875 41 1 5.9225 2.0713 -0.3722 42 1 5.8857 3.8871 -0.3639 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16501620_14772022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:43:47 Heat of formation + Delta-G solvation = -159.174439 kcal Electronic energy + Delta-G solvation = -32283.903178 eV Core-core repulsion = 27593.848608 eV Total energy + Delta-G solvation = -4690.054571 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.069 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -48.76525 -41.73854 -39.83229 -39.35459 -38.28522 -37.67444 -37.37858 -36.71827 -35.82209 -32.72745 -31.93483 -29.44813 -27.59663 -27.30873 -25.96543 -24.49048 -23.81939 -22.42145 -21.82766 -20.68881 -20.05153 -19.48562 -18.90782 -18.62023 -18.29039 -17.68029 -17.52626 -17.31301 -17.13307 -16.94486 -16.68601 -16.22316 -16.10695 -15.63039 -15.40527 -15.17833 -15.10588 -14.73380 -14.60508 -14.30038 -14.12851 -14.10955 -13.98206 -13.84618 -13.59310 -13.33303 -13.05760 -13.03241 -12.92940 -12.89463 -12.86344 -12.70334 -12.63698 -12.52431 -12.31383 -11.69205 -11.60647 -11.52366 -11.48928 -11.38764 -11.20056 -10.60472 -10.24437 -9.87893 -5.30149 -0.70142 -0.52737 0.25797 0.52690 0.92980 1.05516 1.15502 1.34833 1.54199 1.68712 2.02655 2.73580 2.77103 2.88971 2.97738 3.08391 3.15360 3.19000 3.35610 3.52882 3.73966 3.94045 3.96441 3.98508 4.03526 4.09888 4.15960 4.21039 4.28342 4.28729 4.34324 4.42263 4.44711 4.54974 4.66795 4.72351 4.76484 4.78557 4.84071 4.98876 5.00465 5.05153 5.46109 5.92412 5.99748 6.75151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.357 6.357 4 C 0.474 3.526 5 O -0.488 6.488 6 C -0.113 4.113 7 H 0.125 0.875 8 C -0.140 4.140 9 C 0.088 3.912 10 F -0.171 7.171 11 C 0.108 3.892 12 N -1.103 6.103 13 S 2.718 3.282 14 O -0.944 6.944 15 O -0.957 6.957 16 C -0.667 4.667 17 C -0.100 4.100 18 C -0.069 4.069 19 O -0.516 6.516 20 Si 0.672 3.328 21 S 0.158 5.842 22 C -0.210 4.210 23 C -0.077 4.077 24 C -0.137 4.137 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.118 0.882 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.427 0.573 35 H 0.153 0.847 36 H 0.377 0.623 37 H -0.240 1.240 38 H -0.228 1.228 39 H 0.176 0.824 40 H 0.159 0.841 41 H 0.103 0.897 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.835 7.806 -3.240 9.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.274 6.274 4 C 0.315 3.685 5 O -0.374 6.374 6 C -0.132 4.132 7 H 0.143 0.857 8 C -0.178 4.178 9 C 0.068 3.932 10 F -0.151 7.151 11 C -0.019 4.019 12 N -0.866 5.866 13 S 2.803 3.197 14 O -0.934 6.934 15 O -0.947 6.947 16 C -0.767 4.767 17 C -0.221 4.221 18 C -0.181 4.181 19 O -0.323 6.323 20 Si 0.569 3.431 21 S 0.422 5.578 22 C -0.346 4.346 23 C -0.105 4.105 24 C -0.175 4.175 25 H 0.101 0.899 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.136 0.864 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.102 0.898 34 H 0.266 0.734 35 H 0.170 0.830 36 H 0.226 0.774 37 H -0.163 1.163 38 H -0.151 1.151 39 H 0.193 0.807 40 H 0.176 0.824 41 H 0.122 0.878 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.358 8.432 -2.224 9.748 hybrid contribution 0.285 -1.646 -1.343 2.144 sum -4.072 6.786 -3.567 8.681 Atomic orbital electron populations 1.21823 0.92298 1.03311 1.03602 1.23096 0.95550 0.79639 1.02876 1.86469 1.24047 1.32926 1.83939 1.22884 0.80925 0.91674 0.72992 1.90721 1.60363 1.42536 1.43782 1.21979 0.97654 0.91993 1.01551 0.85692 1.23726 0.96759 1.02125 0.95202 1.22080 0.96598 0.80476 0.94092 1.92953 1.97118 1.38542 1.86459 1.21765 1.01089 0.99103 0.79929 1.55451 1.40462 1.75285 1.15382 1.01382 0.72554 0.72715 0.73019 1.93602 1.82122 1.83481 1.34205 1.93591 1.43423 1.78080 1.79614 1.29980 1.01714 1.28557 1.16431 1.25026 0.99368 0.97535 1.00184 1.25017 0.94974 0.99238 0.98838 1.86699 1.83266 1.34537 1.27824 0.94877 0.81712 0.81078 0.85458 1.84284 1.14407 1.04641 1.54452 1.25943 1.01555 0.99295 1.07766 1.19787 0.98330 0.93343 0.99037 1.23611 0.93669 1.06232 0.93964 0.89946 0.91385 0.91389 0.90987 0.91048 0.86391 0.88793 0.88533 0.89783 0.73431 0.82974 0.77403 1.16343 1.15106 0.80678 0.82367 0.87829 0.86274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.23 10.29 37.16 0.38 0.61 16 2 C 0.06 0.04 6.19 37.16 0.23 0.27 16 3 O -0.36 -0.57 10.22 -39.26 -0.40 -0.97 16 4 C 0.47 0.89 6.89 36.01 0.25 1.14 16 5 O -0.49 -2.50 14.55 -18.75 -0.27 -2.77 16 6 C -0.11 0.24 4.45 -90.95 -0.40 -0.17 16 7 H 0.13 -0.55 8.14 -51.93 -0.42 -0.97 16 8 C -0.14 0.52 7.13 -25.77 -0.18 0.34 16 9 C 0.09 -0.13 1.69 -89.66 -0.15 -0.28 16 10 F -0.17 -0.51 15.19 2.25 0.03 -0.48 16 11 C 0.11 -0.28 5.99 -4.04 -0.02 -0.31 16 12 N -1.10 0.81 3.78 -10.61 -0.04 0.77 16 13 S 2.72 5.82 4.94 -107.50 -0.53 5.29 16 14 O -0.94 -4.85 16.66 -60.49 -1.01 -5.86 16 15 O -0.96 -4.82 16.80 -57.17 -0.96 -5.79 16 16 C -0.67 -0.11 5.77 -41.21 -0.24 -0.35 16 17 C -0.10 0.11 5.74 -36.01 -0.21 -0.10 16 18 C -0.07 0.12 2.07 36.00 0.07 0.19 16 19 O -0.52 1.07 8.66 -38.20 -0.33 0.74 16 20 Si 0.67 -1.91 31.06 -169.99 -5.28 -7.19 16 21 S 0.16 -0.37 20.69 -107.50 -2.22 -2.59 16 22 C -0.21 0.38 11.23 29.04 0.33 0.71 16 23 C -0.08 0.03 9.70 -41.20 -0.40 -0.37 16 24 C -0.14 0.34 6.93 -25.92 -0.18 0.16 16 25 H 0.08 -0.22 8.14 -51.93 -0.42 -0.64 16 26 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 27 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 28 H 0.07 0.07 8.13 -51.93 -0.42 -0.35 16 29 H 0.07 0.04 8.13 -51.93 -0.42 -0.38 16 30 H 0.12 -0.83 7.91 -51.93 -0.41 -1.24 16 31 H 0.09 -0.27 8.09 -51.93 -0.42 -0.69 16 32 H 0.10 -0.19 7.73 -51.93 -0.40 -0.60 16 33 H 0.08 -0.51 7.85 -51.93 -0.41 -0.92 16 34 H 0.43 -0.42 7.41 -34.46 -0.26 -0.68 16 35 H 0.15 -0.18 7.71 -51.93 -0.40 -0.58 16 36 H 0.38 -2.06 8.41 45.56 0.38 -1.68 16 37 H -0.24 0.45 7.11 56.52 0.40 0.85 16 38 H -0.23 0.04 7.11 56.52 0.40 0.44 16 39 H 0.18 -0.70 8.06 -52.48 -0.42 -1.12 16 40 H 0.16 -0.14 7.74 -52.49 -0.41 -0.54 16 41 H 0.10 -0.02 7.42 -51.93 -0.39 -0.41 16 42 H 0.12 -0.68 8.10 -51.93 -0.42 -1.10 16 LS Contribution 376.10 15.07 5.67 5.67 Total: 0.00 -11.85 376.10 -11.16 -23.00 By element: Atomic # 1 Polarization: -6.37 SS G_CDS: -5.28 Total: -11.66 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -0.53 Total: 1.84 kcal Atomic # 7 Polarization: 0.81 SS G_CDS: -0.04 Total: 0.77 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -2.97 Total: -14.65 kcal Atomic # 9 Polarization: -0.51 SS G_CDS: 0.03 Total: -0.48 kcal Atomic # 14 Polarization: -1.91 SS G_CDS: -5.28 Total: -7.19 kcal Atomic # 16 Polarization: 5.45 SS G_CDS: -2.76 Total: 2.70 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -11.85 -11.16 -23.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16501620_14772022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.174 kcal (2) G-P(sol) polarization free energy of solvation -11.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds