Wall clock time and date at job start Mon Mar 8 2021 11:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45203 * 109.46924 * 2 1 4 4 C 1.34229 * 116.99688 * 180.02562 * 3 2 1 5 5 O 1.20820 * 119.99913 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99548 * 180.02562 * 4 3 2 7 7 H 1.09002 * 112.85271 * 309.66689 * 6 4 3 8 8 C 1.53788 * 113.61404 * 80.86063 * 6 4 3 9 9 C 1.54055 * 86.98135 * 89.16112 * 8 6 4 10 10 F 1.39904 * 113.61305 * 270.88195 * 9 8 6 11 11 C 1.52997 * 113.69509 * 139.98969 * 9 8 6 12 12 N 1.46502 * 109.47131 * 87.46213 * 11 9 8 13 13 S 1.65597 * 120.00104 * 163.96867 * 12 11 9 14 14 O 1.42100 * 106.40556 * 178.48910 * 13 12 11 15 15 O 1.42100 * 106.40322 * 311.40589 * 13 12 11 16 16 C 1.76205 * 107.21777 * 64.94752 * 13 12 11 17 17 C 1.33382 * 122.53755 * 66.79571 * 16 13 12 18 18 C 1.50699 * 125.20665 * 0.03070 * 17 16 13 19 19 O 1.42900 * 109.46951 * 312.94451 * 18 17 16 20 20 Si 1.86294 * 109.47194 * 192.94124 * 18 17 16 21 21 S 1.75891 * 109.59104 * 179.90431 * 17 16 13 22 22 C 1.75880 * 90.96970 * 0.30535 * 21 17 16 23 23 C 1.33391 * 109.59819 * 359.82795 * 22 21 17 24 24 C 1.53783 * 87.08095 * 25.43046 * 9 8 6 25 25 H 1.09005 * 109.46831 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46973 * 299.99720 * 1 2 3 27 27 H 1.08994 * 109.46860 * 60.00103 * 1 2 3 28 28 H 1.08994 * 109.46860 * 119.99897 * 2 1 3 29 29 H 1.08999 * 109.46973 * 240.00280 * 2 1 3 30 30 H 1.08997 * 113.61497 * 203.66224 * 8 6 4 31 31 H 1.08993 * 113.61507 * 334.56750 * 8 6 4 32 32 H 1.08997 * 109.47187 * 207.46477 * 11 9 8 33 33 H 1.09004 * 109.47311 * 327.46938 * 11 9 8 34 34 H 0.97002 * 120.00349 * 343.97332 * 12 11 9 35 35 H 1.08999 * 109.47027 * 72.94168 * 18 17 16 36 36 H 0.96698 * 113.99755 * 300.57901 * 19 18 17 37 37 H 1.48497 * 110.00101 * 58.68068 * 20 18 17 38 38 H 1.48503 * 109.99984 * 180.02562 * 20 18 17 39 39 H 1.08005 * 125.20220 * 179.79124 * 22 21 17 40 40 H 1.08000 * 122.54745 * 180.02562 * 23 22 21 41 41 H 1.08999 * 113.61099 * 220.02190 * 24 9 8 42 42 H 1.08994 * 113.68977 * 89.12916 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.4896 3.5742 -0.7726 8 6 3.9500 3.5915 1.3916 9 6 5.3428 2.9579 1.5704 10 9 5.3071 1.6722 2.1210 11 6 6.3504 3.8746 2.2668 12 7 6.2425 3.7058 3.7181 13 16 7.4516 4.2544 4.7077 14 8 7.0377 3.9773 6.0386 15 8 8.6701 3.7738 4.1568 16 6 7.4946 6.0093 4.5552 17 6 6.5017 6.7910 4.9821 18 6 5.2349 6.3060 5.6387 19 8 4.6938 5.2192 4.8849 20 14 3.9963 7.6961 5.7011 21 16 6.8988 8.4749 4.6649 22 6 8.4321 8.0080 3.9408 23 6 8.5587 6.6806 3.9779 24 6 5.4578 2.9684 0.0369 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.9665 4.6809 1.3618 31 1 3.1983 3.1971 2.0753 32 1 7.3593 3.6165 1.9451 33 1 6.1397 4.9116 2.0051 34 1 5.4628 3.2727 4.0994 35 1 5.4562 5.9708 6.6519 36 1 4.4812 5.4434 3.9687 37 1 3.7101 8.1835 4.3279 38 1 2.7427 7.2307 6.3469 39 1 9.1597 8.6915 3.5285 40 1 9.4257 6.1685 3.5875 41 1 5.9225 2.0713 -0.3722 42 1 5.8857 3.8871 -0.3639 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16501620_14772022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:43:46 Heat of formation + Delta-G solvation = -162.357936 kcal Electronic energy + Delta-G solvation = -32284.041225 eV Core-core repulsion = 27593.848608 eV Total energy + Delta-G solvation = -4690.192617 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.069 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -48.78395 -41.80897 -39.70378 -39.25193 -38.44326 -37.66669 -37.45648 -36.98158 -35.74339 -32.71971 -31.79043 -29.33711 -27.48041 -27.03937 -25.90045 -24.36659 -23.77310 -22.38960 -21.78776 -20.62503 -20.06755 -19.35935 -18.93492 -18.62016 -18.30340 -17.76136 -17.45550 -17.29916 -17.03719 -16.87073 -16.53862 -16.22035 -16.16356 -15.51730 -15.29700 -15.15344 -15.08919 -14.68097 -14.60143 -14.17858 -13.99743 -13.97236 -13.84520 -13.74983 -13.43004 -13.35208 -13.30135 -13.18362 -13.02583 -12.87787 -12.82031 -12.62567 -12.51293 -12.47842 -12.23402 -11.62181 -11.59910 -11.52835 -11.43843 -11.29715 -11.02091 -10.48271 -10.10834 -9.70898 -5.05666 -0.73115 -0.47818 0.40774 0.67489 1.06537 1.11172 1.15670 1.55767 1.56618 1.89248 2.04158 2.68734 2.98572 3.09956 3.18305 3.22362 3.33739 3.38108 3.45513 3.56348 3.84594 3.91058 3.99306 4.12758 4.25270 4.26971 4.29318 4.37325 4.48661 4.51315 4.61356 4.63372 4.71856 4.73963 4.78812 4.84058 4.89182 4.93210 4.98856 5.08572 5.16293 5.19872 5.41275 6.03356 6.35193 6.64826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.055 3.945 3 O -0.359 6.359 4 C 0.465 3.535 5 O -0.532 6.532 6 C -0.115 4.115 7 H 0.157 0.843 8 C -0.125 4.125 9 C 0.068 3.932 10 F -0.205 7.205 11 C 0.105 3.895 12 N -1.097 6.097 13 S 2.725 3.275 14 O -0.984 6.984 15 O -0.997 6.997 16 C -0.671 4.671 17 C -0.104 4.104 18 C -0.083 4.083 19 O -0.528 6.528 20 Si 0.740 3.260 21 S 0.205 5.795 22 C -0.208 4.208 23 C -0.097 4.097 24 C -0.132 4.132 25 H 0.094 0.906 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.165 0.835 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.130 0.870 34 H 0.428 0.572 35 H 0.141 0.859 36 H 0.392 0.608 37 H -0.239 1.239 38 H -0.271 1.271 39 H 0.198 0.802 40 H 0.155 0.845 41 H 0.073 0.927 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.685 11.202 -4.296 12.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.019 4.019 3 O -0.276 6.276 4 C 0.309 3.691 5 O -0.421 6.421 6 C -0.134 4.134 7 H 0.175 0.825 8 C -0.162 4.162 9 C 0.048 3.952 10 F -0.186 7.186 11 C -0.022 4.022 12 N -0.861 5.861 13 S 2.815 3.185 14 O -0.974 6.974 15 O -0.987 6.987 16 C -0.774 4.774 17 C -0.226 4.226 18 C -0.193 4.193 19 O -0.338 6.338 20 Si 0.638 3.362 21 S 0.469 5.531 22 C -0.343 4.343 23 C -0.124 4.124 24 C -0.170 4.170 25 H 0.113 0.887 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.183 0.817 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.148 0.852 34 H 0.267 0.733 35 H 0.158 0.842 36 H 0.244 0.756 37 H -0.163 1.163 38 H -0.196 1.196 39 H 0.215 0.785 40 H 0.173 0.827 41 H 0.091 0.909 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -5.199 11.794 -3.295 13.303 hybrid contribution 0.517 -2.697 -1.019 2.929 sum -4.682 9.097 -4.314 11.103 Atomic orbital electron populations 1.21816 0.90452 1.04248 1.03837 1.23210 0.97026 0.79483 1.02139 1.86485 1.24209 1.33223 1.83686 1.23881 0.80623 0.93123 0.71479 1.90700 1.61132 1.44362 1.45885 1.22167 0.97710 0.89852 1.03680 0.82496 1.23844 0.94486 1.04422 0.93413 1.22534 0.98663 0.79247 0.94777 1.92881 1.97375 1.41238 1.87073 1.22048 1.00445 1.01317 0.78348 1.55187 1.39570 1.75274 1.16104 1.00633 0.72068 0.73533 0.72264 1.93544 1.82596 1.84705 1.36602 1.93537 1.45566 1.79568 1.79990 1.29530 1.02872 1.26729 1.18293 1.25180 0.99128 0.98654 0.99634 1.25255 0.95489 1.00045 0.98479 1.86679 1.83191 1.34846 1.29042 0.94050 0.78639 0.79637 0.83854 1.84154 1.13400 1.02498 1.53071 1.26272 1.02248 0.99014 1.06794 1.19828 0.98360 0.94115 1.00134 1.23734 0.93458 1.06812 0.93000 0.88703 0.91252 0.90925 0.92122 0.91508 0.81727 0.89791 0.89613 0.85209 0.73271 0.84198 0.75631 1.16330 1.19578 0.78507 0.82738 0.90865 0.82160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.39 10.29 71.98 0.74 1.13 16 2 C 0.05 0.15 6.19 71.98 0.45 0.60 16 3 O -0.36 -1.47 10.22 -51.41 -0.53 -2.00 16 4 C 0.47 2.29 6.89 71.24 0.49 2.78 16 5 O -0.53 -6.89 14.55 21.98 0.32 -6.57 16 6 C -0.12 0.62 4.45 -11.01 -0.05 0.57 16 7 H 0.16 -1.84 8.14 -2.39 -0.02 -1.86 16 8 C -0.12 1.15 7.13 31.22 0.22 1.38 16 9 C 0.07 -0.21 1.69 -10.17 -0.02 -0.22 16 10 F -0.21 -1.71 15.19 44.97 0.68 -1.03 16 11 C 0.10 -0.61 5.99 86.38 0.52 -0.09 16 12 N -1.10 0.77 3.78 -187.49 -0.71 0.06 16 13 S 2.73 15.92 4.94 -56.49 -0.28 15.64 16 14 O -0.98 -12.43 16.66 -124.83 -2.08 -14.51 16 15 O -1.00 -12.34 16.80 -128.00 -2.15 -14.49 16 16 C -0.67 -0.13 5.77 21.22 0.12 0.00 16 17 C -0.10 0.33 5.74 24.59 0.14 0.48 16 18 C -0.08 0.31 2.07 71.24 0.15 0.45 16 19 O -0.53 2.35 8.66 -146.14 -1.27 1.09 16 20 Si 0.74 -5.17 31.06 68.60 2.13 -3.04 16 21 S 0.20 -1.45 20.69 -56.49 -1.17 -2.62 16 22 C -0.21 1.17 11.23 66.72 0.75 1.92 16 23 C -0.10 0.13 9.70 21.22 0.21 0.34 16 24 C -0.13 0.75 6.93 31.12 0.22 0.96 16 25 H 0.09 -0.49 8.14 -2.38 -0.02 -0.51 16 26 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 27 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 28 H 0.06 0.28 8.13 -2.39 -0.02 0.26 16 29 H 0.07 0.21 8.13 -2.39 -0.02 0.19 16 30 H 0.17 -3.09 7.91 -2.39 -0.02 -3.11 16 31 H 0.08 -0.54 8.09 -2.39 -0.02 -0.56 16 32 H 0.09 -0.30 7.73 -2.39 -0.02 -0.31 16 33 H 0.13 -1.98 7.85 -2.38 -0.02 -2.00 16 34 H 0.43 -0.30 7.41 -96.75 -0.72 -1.02 16 35 H 0.14 -0.20 7.71 -2.39 -0.02 -0.22 16 36 H 0.39 -4.99 8.41 -74.06 -0.62 -5.61 16 37 H -0.24 1.62 7.11 99.48 0.71 2.33 16 38 H -0.27 0.02 7.11 99.48 0.71 0.72 16 39 H 0.20 -2.09 8.06 -2.91 -0.02 -2.12 16 40 H 0.16 -0.18 7.74 -2.91 -0.02 -0.21 16 41 H 0.07 0.09 7.42 -2.39 -0.02 0.07 16 42 H 0.16 -2.32 8.10 -2.39 -0.02 -2.34 16 Total: 0.00 -32.60 376.10 -1.33 -33.93 By element: Atomic # 1 Polarization: -16.54 SS G_CDS: -0.22 Total: -16.76 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: 3.93 Total: 10.29 kcal Atomic # 7 Polarization: 0.77 SS G_CDS: -0.71 Total: 0.06 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -5.70 Total: -36.48 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.68 Total: -1.03 kcal Atomic # 14 Polarization: -5.17 SS G_CDS: 2.13 Total: -3.04 kcal Atomic # 16 Polarization: 14.48 SS G_CDS: -1.45 Total: 13.03 kcal Total: -32.60 -1.33 -33.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16501620_14772022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.429 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds