Wall clock time and date at job start Mon Mar 8 2021 11:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45205 * 109.46958 * 2 1 4 4 C 1.34229 * 116.99776 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00381 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99975 * 179.97438 * 4 3 2 7 7 H 1.09003 * 112.90977 * 48.75445 * 6 4 3 8 8 C 1.53779 * 113.61683 * 180.02562 * 6 4 3 9 9 C 1.53773 * 87.08302 * 89.11729 * 8 6 4 10 10 F 1.39906 * 113.61544 * 270.80019 * 9 8 6 11 11 C 1.53001 * 113.61606 * 139.98395 * 9 8 6 12 12 N 1.46497 * 109.47112 * 180.02562 * 11 9 8 13 13 S 1.65608 * 119.99763 * 165.00151 * 12 11 9 14 14 O 1.42097 * 106.40045 * 311.45123 * 13 12 11 15 15 O 1.42101 * 106.40075 * 178.53800 * 13 12 11 16 16 C 1.76191 * 107.22096 * 64.99798 * 13 12 11 17 17 C 1.33390 * 122.53634 * 270.02224 * 16 13 12 18 18 S 1.75890 * 109.59395 * 179.97438 * 17 16 13 19 19 C 1.75889 * 90.96802 * 359.97438 * 18 17 16 20 20 C 1.50703 * 125.19988 * 180.02562 * 19 18 17 21 21 O 1.42900 * 109.47169 * 119.97790 * 20 19 18 22 22 Si 1.86300 * 109.47380 * 359.97335 * 20 19 18 23 23 C 1.33383 * 109.59330 * 0.02562 * 19 18 17 24 24 C 1.53776 * 87.08274 * 25.43348 * 9 8 6 25 25 H 1.08999 * 109.47053 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47212 * 299.99586 * 1 2 3 27 27 H 1.08997 * 109.47435 * 59.99798 * 1 2 3 28 28 H 1.08995 * 109.47428 * 239.99963 * 2 1 3 29 29 H 1.09000 * 109.47461 * 119.99688 * 2 1 3 30 30 H 1.09002 * 113.61412 * 334.56489 * 8 6 4 31 31 H 1.09000 * 113.61231 * 203.66431 * 8 6 4 32 32 H 1.08999 * 109.47344 * 59.99974 * 11 9 8 33 33 H 1.09004 * 109.47070 * 299.99484 * 11 9 8 34 34 H 0.96994 * 120.00412 * 344.99789 * 12 11 9 35 35 H 1.07998 * 125.20728 * 0.02562 * 17 16 13 36 36 H 1.09001 * 109.46459 * 239.97663 * 20 19 18 37 37 H 0.96693 * 113.99983 * 180.02562 * 21 20 19 38 38 H 1.48501 * 109.99604 * 60.00199 * 22 20 19 39 39 H 1.48494 * 110.00140 * 181.32040 * 22 20 19 40 40 H 1.08006 * 122.53740 * 180.02562 * 23 19 18 41 41 H 1.09006 * 113.61554 * 89.11605 * 24 9 8 42 42 H 1.09001 * 113.62072 * 220.01906 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.4708 3.5830 0.7543 8 6 5.4582 2.9682 0.0001 9 6 5.3805 2.9423 -1.5355 10 9 5.3599 1.6512 -2.0739 11 6 6.4036 3.8537 -2.2164 12 7 6.2498 3.7599 -3.6702 13 16 6.9529 4.8932 -4.6520 14 8 6.6079 6.1615 -4.1119 15 8 6.6528 4.5093 -5.9869 16 6 8.6978 4.7321 -4.4683 17 6 9.3880 5.4094 -3.5496 18 16 11.0927 4.9918 -3.6660 19 6 10.7621 3.8876 -4.9945 20 6 11.7963 3.0624 -5.7161 21 8 11.4811 1.6756 -5.5768 22 14 13.4769 3.3939 -4.9837 23 6 9.4561 3.8923 -5.2656 24 6 3.9864 3.5764 -1.3973 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 5.9127 2.0753 0.4294 31 1 5.8764 3.8916 0.4006 32 1 7.4101 3.5430 -1.9364 33 1 6.2400 4.8838 -1.8998 34 1 5.7362 3.0341 -4.0578 35 1 8.9649 6.1069 -2.8419 36 1 11.8013 3.3295 -6.7729 37 1 12.1064 1.0840 -6.0172 38 1 13.4830 3.0339 -3.5430 39 1 14.5099 2.6103 -5.7075 40 1 9.0229 3.2861 -6.0476 41 1 4.0022 4.6662 -1.3788 42 1 3.2526 3.1746 -2.0961 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16501620_15065232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:43:51 Heat of formation + Delta-G solvation = -166.437075 kcal Electronic energy + Delta-G solvation = -30856.732456 eV Core-core repulsion = 26166.362954 eV Total energy + Delta-G solvation = -4690.369502 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.069 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -48.81335 -41.71981 -39.44815 -39.36297 -38.25116 -37.71753 -37.41488 -36.87427 -35.96086 -32.70846 -32.01260 -29.49364 -27.25397 -27.24858 -25.97414 -24.87299 -23.81741 -22.42428 -21.26871 -20.70799 -20.13520 -19.06953 -18.97932 -18.62176 -18.45298 -17.84246 -17.74976 -17.53100 -17.38893 -16.90694 -16.49949 -16.26652 -16.06022 -15.72482 -15.34046 -15.08002 -14.83500 -14.62109 -14.42364 -14.29583 -14.15862 -14.08228 -13.98932 -13.76973 -13.57234 -13.40811 -13.14737 -13.06527 -13.04046 -12.90568 -12.89220 -12.68701 -12.64663 -12.51076 -12.44607 -11.70385 -11.60228 -11.54314 -11.50051 -11.38089 -10.78332 -10.70688 -10.19636 -9.82890 -5.21675 -0.78153 -0.48629 0.26735 0.55986 0.98286 1.10939 1.17454 1.42752 1.56918 1.76302 1.94927 2.67404 2.82330 2.89891 3.05644 3.10749 3.20594 3.35083 3.39476 3.62915 3.73830 3.80191 3.95781 3.99686 4.01789 4.10201 4.14798 4.26765 4.28979 4.30021 4.31097 4.41111 4.51639 4.58543 4.65761 4.72111 4.75786 4.80695 4.91199 5.01137 5.03132 5.07229 5.48057 5.75702 6.25276 6.77144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.062 3.938 3 O -0.356 6.356 4 C 0.475 3.525 5 O -0.490 6.490 6 C -0.114 4.114 7 H 0.127 0.873 8 C -0.135 4.135 9 C 0.085 3.915 10 F -0.173 7.173 11 C 0.108 3.892 12 N -1.113 6.113 13 S 2.713 3.287 14 O -0.951 6.951 15 O -0.948 6.948 16 C -0.685 4.685 17 C -0.091 4.091 18 S 0.169 5.831 19 C -0.182 4.182 20 C -0.037 4.037 21 O -0.531 6.531 22 Si 0.649 3.351 23 C -0.043 4.043 24 C -0.137 4.137 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.120 0.880 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.424 0.576 35 H 0.187 0.813 36 H 0.090 0.910 37 H 0.384 0.616 38 H -0.235 1.235 39 H -0.236 1.236 40 H 0.156 0.844 41 H 0.123 0.877 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.490 2.627 2.868 4.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.012 4.012 3 O -0.273 6.273 4 C 0.316 3.684 5 O -0.376 6.376 6 C -0.133 4.133 7 H 0.145 0.855 8 C -0.173 4.173 9 C 0.065 3.935 10 F -0.153 7.153 11 C -0.019 4.019 12 N -0.874 5.874 13 S 2.799 3.201 14 O -0.941 6.941 15 O -0.938 6.938 16 C -0.785 4.785 17 C -0.230 4.230 18 S 0.433 5.567 19 C -0.300 4.300 20 C -0.148 4.148 21 O -0.339 6.339 22 Si 0.547 3.453 23 C -0.072 4.072 24 C -0.175 4.175 25 H 0.100 0.900 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.121 0.879 31 H 0.138 0.862 32 H 0.099 0.901 33 H 0.123 0.877 34 H 0.260 0.740 35 H 0.204 0.796 36 H 0.108 0.892 37 H 0.233 0.767 38 H -0.159 1.159 39 H -0.160 1.160 40 H 0.174 0.826 41 H 0.142 0.858 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.930 3.327 3.914 5.914 hybrid contribution -0.917 -2.540 -1.076 2.907 sum 2.013 0.788 2.838 3.567 Atomic orbital electron populations 1.21822 0.92276 1.03290 1.03668 1.23091 0.95585 0.79664 1.02812 1.86479 1.24036 1.32881 1.83886 1.22903 0.80918 0.91678 0.72886 1.90712 1.60375 1.42586 1.43965 1.22004 0.97551 0.92039 1.01732 0.85533 1.23591 0.93731 1.06136 0.93819 1.22043 0.97021 0.80066 0.94395 1.92939 1.97224 1.38253 1.86923 1.21797 0.99627 1.01000 0.79430 1.55434 1.68374 1.47644 1.15988 1.01529 0.72759 0.73040 0.72760 1.93605 1.81907 1.38709 1.79844 1.93623 1.83347 1.83010 1.33810 1.29987 1.28129 1.11833 1.08583 1.25924 0.97515 1.00012 0.99560 1.84329 1.06245 1.36680 1.29408 1.23784 0.97961 1.05255 1.02965 1.24048 1.05254 0.82941 1.02596 1.86599 1.53793 1.14683 1.78834 0.95330 0.75336 0.92684 0.81930 1.19572 0.91879 0.96707 0.98998 1.23664 0.96171 1.02732 0.94929 0.89972 0.91357 0.91337 0.91038 0.91081 0.87943 0.86160 0.90089 0.87730 0.73961 0.79553 0.89246 0.76681 1.15895 1.15951 0.82624 0.85836 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.21 10.29 37.16 0.38 0.59 16 2 C 0.06 0.04 6.19 37.16 0.23 0.27 16 3 O -0.36 -0.65 10.22 -39.25 -0.40 -1.06 16 4 C 0.47 0.99 6.93 36.00 0.25 1.24 16 5 O -0.49 -2.50 14.47 -18.75 -0.27 -2.77 16 6 C -0.11 0.18 4.46 -90.96 -0.41 -0.22 16 7 H 0.13 -0.49 8.14 -51.93 -0.42 -0.92 16 8 C -0.13 0.32 6.93 -25.92 -0.18 0.14 16 9 C 0.08 -0.10 1.72 -89.81 -0.15 -0.25 16 10 F -0.17 -0.46 14.96 2.25 0.03 -0.42 16 11 C 0.11 -0.27 5.91 -4.04 -0.02 -0.29 16 12 N -1.11 1.04 5.96 -10.61 -0.06 0.98 16 13 S 2.71 2.95 5.80 -107.50 -0.62 2.33 16 14 O -0.95 -2.58 17.11 -57.17 -0.98 -3.56 16 15 O -0.95 -4.20 17.63 -57.17 -1.01 -5.21 16 16 C -0.69 -0.47 5.86 -41.21 -0.24 -0.71 16 17 C -0.09 0.08 10.70 29.04 0.31 0.39 16 18 S 0.17 -0.12 20.58 -107.50 -2.21 -2.34 16 19 C -0.18 -0.18 5.76 -36.00 -0.21 -0.38 16 20 C -0.04 0.01 2.95 36.01 0.11 0.12 16 21 O -0.53 -0.37 12.83 -35.23 -0.45 -0.82 16 22 Si 0.65 -0.85 30.97 -169.99 -5.26 -6.11 16 23 C -0.04 -0.07 9.56 -41.21 -0.39 -0.47 16 24 C -0.14 0.33 7.11 -25.92 -0.18 0.14 16 25 H 0.08 -0.21 8.14 -51.93 -0.42 -0.63 16 26 H 0.07 -0.10 8.14 -51.93 -0.42 -0.52 16 27 H 0.07 -0.09 8.14 -51.93 -0.42 -0.51 16 28 H 0.07 0.07 8.13 -51.93 -0.42 -0.35 16 29 H 0.07 0.04 8.13 -51.93 -0.42 -0.38 16 30 H 0.10 -0.05 7.44 -51.93 -0.39 -0.43 16 31 H 0.12 -0.68 8.10 -51.93 -0.42 -1.10 16 32 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 33 H 0.10 -0.47 7.55 -51.93 -0.39 -0.87 16 34 H 0.42 -0.49 8.19 -34.47 -0.28 -0.78 16 35 H 0.19 -0.68 8.00 -52.49 -0.42 -1.10 16 36 H 0.09 -0.19 7.96 -51.93 -0.41 -0.60 16 37 H 0.38 -1.32 8.74 45.56 0.40 -0.93 16 38 H -0.24 -0.34 7.11 56.52 0.40 0.06 16 39 H -0.24 -0.03 7.11 56.52 0.40 0.37 16 40 H 0.16 0.25 7.97 -52.48 -0.42 -0.17 16 41 H 0.12 -0.58 7.96 -51.93 -0.41 -1.00 16 42 H 0.09 -0.14 8.09 -51.93 -0.42 -0.56 16 LS Contribution 386.10 15.07 5.82 5.82 Total: 0.00 -12.43 386.10 -11.26 -23.69 By element: Atomic # 1 Polarization: -5.80 SS G_CDS: -5.32 Total: -11.12 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -0.51 Total: 0.59 kcal Atomic # 7 Polarization: 1.04 SS G_CDS: -0.06 Total: 0.98 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -3.11 Total: -13.42 kcal Atomic # 9 Polarization: -0.46 SS G_CDS: 0.03 Total: -0.42 kcal Atomic # 14 Polarization: -0.85 SS G_CDS: -5.26 Total: -6.11 kcal Atomic # 16 Polarization: 2.83 SS G_CDS: -2.84 Total: -0.01 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -12.43 -11.26 -23.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16501620_15065232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.745 kcal (2) G-P(sol) polarization free energy of solvation -12.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds