Wall clock time and date at job start Mon Mar 8 2021 11:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45205 * 109.46958 * 2 1 4 4 C 1.34229 * 116.99776 * 179.97438 * 3 2 1 5 5 O 1.20821 * 120.00381 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99975 * 179.97438 * 4 3 2 7 7 H 1.09003 * 112.90977 * 48.75445 * 6 4 3 8 8 C 1.53779 * 113.61683 * 180.02562 * 6 4 3 9 9 C 1.53773 * 87.08302 * 89.11729 * 8 6 4 10 10 F 1.39906 * 113.61544 * 270.80019 * 9 8 6 11 11 C 1.53001 * 113.61606 * 139.98395 * 9 8 6 12 12 N 1.46497 * 109.47112 * 180.02562 * 11 9 8 13 13 S 1.65608 * 119.99763 * 165.00151 * 12 11 9 14 14 O 1.42097 * 106.40045 * 311.45123 * 13 12 11 15 15 O 1.42101 * 106.40075 * 178.53800 * 13 12 11 16 16 C 1.76191 * 107.22096 * 64.99798 * 13 12 11 17 17 C 1.33390 * 122.53634 * 270.02224 * 16 13 12 18 18 S 1.75890 * 109.59395 * 179.97438 * 17 16 13 19 19 C 1.75889 * 90.96802 * 359.97438 * 18 17 16 20 20 C 1.50703 * 125.19988 * 180.02562 * 19 18 17 21 21 O 1.42900 * 109.47169 * 119.97790 * 20 19 18 22 22 Si 1.86300 * 109.47380 * 359.97335 * 20 19 18 23 23 C 1.33383 * 109.59330 * 0.02562 * 19 18 17 24 24 C 1.53776 * 87.08274 * 25.43348 * 9 8 6 25 25 H 1.08999 * 109.47053 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47212 * 299.99586 * 1 2 3 27 27 H 1.08997 * 109.47435 * 59.99798 * 1 2 3 28 28 H 1.08995 * 109.47428 * 239.99963 * 2 1 3 29 29 H 1.09000 * 109.47461 * 119.99688 * 2 1 3 30 30 H 1.09002 * 113.61412 * 334.56489 * 8 6 4 31 31 H 1.09000 * 113.61231 * 203.66431 * 8 6 4 32 32 H 1.08999 * 109.47344 * 59.99974 * 11 9 8 33 33 H 1.09004 * 109.47070 * 299.99484 * 11 9 8 34 34 H 0.96994 * 120.00412 * 344.99789 * 12 11 9 35 35 H 1.07998 * 125.20728 * 0.02562 * 17 16 13 36 36 H 1.09001 * 109.46459 * 239.97663 * 20 19 18 37 37 H 0.96693 * 113.99983 * 180.02562 * 21 20 19 38 38 H 1.48501 * 109.99604 * 60.00199 * 22 20 19 39 39 H 1.48494 * 110.00140 * 181.32040 * 22 20 19 40 40 H 1.08006 * 122.53740 * 180.02562 * 23 19 18 41 41 H 1.09006 * 113.61554 * 89.11605 * 24 9 8 42 42 H 1.09001 * 113.62072 * 220.01906 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5868 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.4708 3.5830 0.7543 8 6 5.4582 2.9682 0.0001 9 6 5.3805 2.9423 -1.5355 10 9 5.3599 1.6512 -2.0739 11 6 6.4036 3.8537 -2.2164 12 7 6.2498 3.7599 -3.6702 13 16 6.9529 4.8932 -4.6520 14 8 6.6079 6.1615 -4.1119 15 8 6.6528 4.5093 -5.9869 16 6 8.6978 4.7321 -4.4683 17 6 9.3880 5.4094 -3.5496 18 16 11.0927 4.9918 -3.6660 19 6 10.7621 3.8876 -4.9945 20 6 11.7963 3.0624 -5.7161 21 8 11.4811 1.6756 -5.5768 22 14 13.4769 3.3939 -4.9837 23 6 9.4561 3.8923 -5.2656 24 6 3.9864 3.5764 -1.3973 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 5.9127 2.0753 0.4294 31 1 5.8764 3.8916 0.4006 32 1 7.4101 3.5430 -1.9364 33 1 6.2400 4.8838 -1.8998 34 1 5.7362 3.0341 -4.0578 35 1 8.9649 6.1069 -2.8419 36 1 11.8013 3.3295 -6.7729 37 1 12.1064 1.0840 -6.0172 38 1 13.4830 3.0339 -3.5430 39 1 14.5099 2.6103 -5.7075 40 1 9.0229 3.2861 -6.0476 41 1 4.0022 4.6662 -1.3788 42 1 3.2526 3.1746 -2.0961 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16501620_15065232.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:43:50 Heat of formation + Delta-G solvation = -171.043978 kcal Electronic energy + Delta-G solvation = -30856.932227 eV Core-core repulsion = 26166.362954 eV Total energy + Delta-G solvation = -4690.569273 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 380.069 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -48.82439 -41.80598 -39.43137 -39.28692 -38.41369 -37.70614 -37.55890 -37.04533 -35.87268 -32.70847 -31.99314 -29.38451 -27.22537 -27.02896 -25.91676 -24.86357 -23.78000 -22.40780 -21.28138 -20.67298 -20.12627 -19.04246 -19.00110 -18.60792 -18.52374 -17.86400 -17.79271 -17.55687 -17.36172 -16.86306 -16.44662 -16.23976 -16.11008 -15.73079 -15.31916 -15.09650 -14.77721 -14.62718 -14.42298 -14.25272 -14.14744 -13.98604 -13.95903 -13.69973 -13.49165 -13.37786 -13.33057 -13.22710 -13.02338 -12.88927 -12.87475 -12.72102 -12.61205 -12.49031 -12.45582 -11.68966 -11.60845 -11.51893 -11.47693 -11.37907 -10.72168 -10.59902 -10.16307 -9.80007 -5.12691 -0.81366 -0.46453 0.31425 0.58738 0.96139 1.06271 1.15348 1.49324 1.57567 1.81237 1.97552 2.63539 3.00157 3.05743 3.15569 3.24531 3.34925 3.39088 3.54078 3.67740 3.81656 3.92270 3.92518 4.00478 4.16785 4.24503 4.27307 4.34609 4.37129 4.50906 4.57252 4.63774 4.66398 4.73285 4.75778 4.85428 4.89499 4.90643 4.91660 5.03894 5.09904 5.20521 5.41939 5.82073 6.46648 6.65140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.055 3.945 3 O -0.360 6.360 4 C 0.467 3.533 5 O -0.530 6.530 6 C -0.117 4.117 7 H 0.157 0.843 8 C -0.126 4.126 9 C 0.068 3.932 10 F -0.202 7.202 11 C 0.102 3.898 12 N -1.111 6.111 13 S 2.734 3.266 14 O -0.965 6.965 15 O -0.988 6.988 16 C -0.697 4.697 17 C -0.083 4.083 18 S 0.194 5.806 19 C -0.201 4.201 20 C -0.050 4.050 21 O -0.554 6.554 22 Si 0.722 3.278 23 C -0.062 4.062 24 C -0.131 4.131 25 H 0.095 0.905 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.162 0.838 32 H 0.091 0.909 33 H 0.134 0.866 34 H 0.424 0.576 35 H 0.217 0.783 36 H 0.106 0.894 37 H 0.399 0.601 38 H -0.273 1.273 39 H -0.255 1.255 40 H 0.145 0.855 41 H 0.156 0.844 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.799 4.573 3.973 6.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.018 4.018 3 O -0.277 6.277 4 C 0.311 3.689 5 O -0.418 6.418 6 C -0.136 4.136 7 H 0.174 0.826 8 C -0.164 4.164 9 C 0.048 3.952 10 F -0.183 7.183 11 C -0.024 4.024 12 N -0.872 5.872 13 S 2.822 3.178 14 O -0.955 6.955 15 O -0.979 6.979 16 C -0.798 4.798 17 C -0.222 4.222 18 S 0.458 5.542 19 C -0.318 4.318 20 C -0.161 4.161 21 O -0.365 6.365 22 Si 0.622 3.378 23 C -0.091 4.091 24 C -0.168 4.168 25 H 0.114 0.886 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.180 0.820 32 H 0.109 0.891 33 H 0.152 0.848 34 H 0.260 0.740 35 H 0.234 0.766 36 H 0.123 0.877 37 H 0.251 0.749 38 H -0.199 1.199 39 H -0.180 1.180 40 H 0.163 0.837 41 H 0.174 0.826 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.208 5.281 4.997 7.947 hybrid contribution -0.989 -3.213 -1.373 3.632 sum 2.219 2.068 3.624 4.726 Atomic orbital electron populations 1.21820 0.90515 1.04267 1.03823 1.23219 0.97005 0.79405 1.02210 1.86495 1.24238 1.33336 1.83650 1.23808 0.80636 0.92997 0.71506 1.90690 1.61052 1.44228 1.45880 1.22185 0.98149 0.90038 1.03179 0.82579 1.23704 0.93056 1.07066 0.92596 1.22425 0.98362 0.79012 0.95399 1.92879 1.97412 1.40517 1.87468 1.22091 0.99917 1.02341 0.78081 1.55273 1.68061 1.47177 1.16723 1.00660 0.72667 0.72666 0.71842 1.93574 1.82391 1.39676 1.79901 1.93566 1.84196 1.83626 1.36485 1.29813 1.27620 1.12790 1.09541 1.26348 0.97400 0.99376 0.99091 1.84229 1.06135 1.35648 1.28179 1.24086 0.98105 1.05874 1.03750 1.24346 1.05547 0.82416 1.03748 1.86554 1.55013 1.15549 1.79374 0.94524 0.73280 0.91511 0.78446 1.19638 0.92551 0.97424 0.99482 1.23769 0.94850 1.04345 0.93830 0.88616 0.90970 0.91303 0.92011 0.91404 0.90291 0.82023 0.89054 0.84816 0.73981 0.76577 0.87680 0.74949 1.19875 1.17963 0.83722 0.82585 0.90276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.35 10.29 71.98 0.74 1.09 16 2 C 0.06 0.15 6.19 71.98 0.45 0.60 16 3 O -0.36 -1.69 10.22 -51.41 -0.53 -2.22 16 4 C 0.47 2.45 6.93 71.24 0.49 2.95 16 5 O -0.53 -6.55 14.47 21.98 0.32 -6.23 16 6 C -0.12 0.48 4.46 -11.01 -0.05 0.43 16 7 H 0.16 -1.59 8.14 -2.39 -0.02 -1.61 16 8 C -0.13 0.74 6.93 31.12 0.22 0.96 16 9 C 0.07 -0.18 1.72 -10.27 -0.02 -0.19 16 10 F -0.20 -1.41 14.96 44.97 0.67 -0.73 16 11 C 0.10 -0.62 5.91 86.38 0.51 -0.11 16 12 N -1.11 1.92 5.96 -187.49 -1.12 0.80 16 13 S 2.73 6.71 5.80 -56.49 -0.33 6.38 16 14 O -0.97 -4.41 17.11 -128.00 -2.19 -6.60 16 15 O -0.99 -10.33 17.63 -128.00 -2.26 -12.59 16 16 C -0.70 -0.93 5.86 21.22 0.12 -0.81 16 17 C -0.08 0.26 10.70 66.72 0.71 0.97 16 18 S 0.19 -0.45 20.58 -56.49 -1.16 -1.61 16 19 C -0.20 -0.44 5.76 24.59 0.14 -0.30 16 20 C -0.05 0.02 2.95 71.24 0.21 0.24 16 21 O -0.55 -1.20 12.83 -148.98 -1.91 -3.11 16 22 Si 0.72 -1.94 30.97 68.60 2.12 0.18 16 23 C -0.06 -0.26 9.56 21.21 0.20 -0.06 16 24 C -0.13 0.76 7.11 31.12 0.22 0.99 16 25 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 26 H 0.07 -0.21 8.14 -2.38 -0.02 -0.23 16 27 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 28 H 0.06 0.26 8.13 -2.39 -0.02 0.24 16 29 H 0.07 0.20 8.13 -2.39 -0.02 0.18 16 30 H 0.08 -0.03 7.44 -2.39 -0.02 -0.05 16 31 H 0.16 -2.38 8.10 -2.39 -0.02 -2.40 16 32 H 0.09 -0.75 8.14 -2.39 -0.02 -0.77 16 33 H 0.13 -1.62 7.55 -2.39 -0.02 -1.64 16 34 H 0.42 -0.46 8.19 -96.75 -0.79 -1.25 16 35 H 0.22 -2.16 8.00 -2.91 -0.02 -2.19 16 36 H 0.11 -0.44 7.96 -2.39 -0.02 -0.46 16 37 H 0.40 -2.49 8.74 -74.06 -0.65 -3.14 16 38 H -0.27 -0.93 7.11 99.48 0.71 -0.22 16 39 H -0.26 -0.05 7.11 99.48 0.71 0.65 16 40 H 0.15 0.79 7.97 -2.91 -0.02 0.77 16 41 H 0.16 -1.95 7.96 -2.38 -0.02 -1.97 16 42 H 0.08 -0.22 8.09 -2.39 -0.02 -0.24 16 Total: 0.00 -31.24 386.10 -2.74 -33.99 By element: Atomic # 1 Polarization: -14.68 SS G_CDS: -0.32 Total: -15.00 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: 3.95 Total: 6.75 kcal Atomic # 7 Polarization: 1.92 SS G_CDS: -1.12 Total: 0.80 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -6.57 Total: -30.75 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.67 Total: -0.73 kcal Atomic # 14 Polarization: -1.94 SS G_CDS: 2.12 Total: 0.18 kcal Atomic # 16 Polarization: 6.26 SS G_CDS: -1.49 Total: 4.77 kcal Total: -31.24 -2.74 -33.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16501620_15065232.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.056 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds