Wall clock time and date at job start Mon Mar 8 2021 11:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45202 * 109.47363 * 2 1 4 4 C 1.34227 * 116.99880 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00057 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99901 * 179.97438 * 4 3 2 7 7 H 1.09004 * 112.85216 * 311.20419 * 6 4 3 8 8 C 1.54057 * 113.69566 * 82.46612 * 6 4 3 9 9 C 1.53780 * 86.98551 * 139.99029 * 8 6 4 10 10 F 1.39900 * 113.61532 * 219.98068 * 9 8 6 11 11 C 1.52997 * 113.61426 * 89.16545 * 9 8 6 12 12 N 1.46494 * 109.47301 * 85.85848 * 11 9 8 13 13 S 1.65603 * 120.00312 * 164.72331 * 12 11 9 14 14 O 1.42093 * 106.40695 * 178.81891 * 13 12 11 15 15 O 1.42101 * 106.40006 * 311.74134 * 13 12 11 16 16 C 1.76203 * 107.21338 * 65.27866 * 13 12 11 17 17 C 1.33385 * 122.53695 * 96.15741 * 16 13 12 18 18 C 1.50701 * 125.20349 * 0.02562 * 17 16 13 19 19 S 1.75883 * 109.59484 * 179.90227 * 17 16 13 20 20 C 1.75887 * 90.96886 * 0.29921 * 19 17 16 21 21 C 1.50696 * 125.20477 * 179.79473 * 20 19 17 22 22 C 1.33390 * 109.59308 * 359.83188 * 20 19 17 23 23 C 1.50700 * 122.54082 * 179.97438 * 22 20 19 24 24 O 1.42900 * 109.46544 * 315.34905 * 23 22 20 25 25 Si 1.86296 * 109.47234 * 75.34961 * 23 22 20 26 26 C 1.53777 * 113.61633 * 180.02562 * 6 4 3 27 27 H 1.08994 * 109.47428 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47024 * 300.00006 * 1 2 3 29 29 H 1.09001 * 109.46946 * 60.00376 * 1 2 3 30 30 H 1.08994 * 109.47181 * 239.99769 * 2 1 3 31 31 H 1.09001 * 109.46946 * 119.99624 * 2 1 3 32 32 H 1.09009 * 113.60828 * 25.48883 * 8 6 4 33 33 H 1.08996 * 113.69980 * 254.51305 * 8 6 4 34 34 H 1.09004 * 109.46788 * 325.86385 * 11 9 8 35 35 H 1.08999 * 109.47554 * 205.86456 * 11 9 8 36 36 H 0.97004 * 120.00117 * 345.00801 * 12 11 9 37 37 H 1.08997 * 109.47756 * 83.78031 * 18 17 16 38 38 H 1.09005 * 109.46881 * 203.77847 * 18 17 16 39 39 H 1.09005 * 109.47088 * 323.77485 * 18 17 16 40 40 H 1.09003 * 109.47343 * 267.82545 * 21 20 19 41 41 H 1.08996 * 109.47393 * 27.82309 * 21 20 19 42 42 H 1.08992 * 109.47414 * 147.82454 * 21 20 19 43 43 H 1.08997 * 109.47309 * 195.35310 * 23 22 20 44 44 H 0.96701 * 114.00691 * 293.46695 * 24 23 22 45 45 H 1.48497 * 110.00184 * 65.16792 * 25 23 22 46 46 H 1.48497 * 109.99914 * 186.48998 * 25 23 22 47 47 H 1.09004 * 113.61216 * 105.38956 * 26 6 4 48 48 H 1.09001 * 113.61716 * 334.48756 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.4716 3.5809 -0.7563 8 6 3.9859 3.5809 1.3982 9 6 5.3561 4.1443 0.9859 10 9 6.3097 4.1033 2.0087 11 6 5.2764 5.5109 0.3025 12 7 5.2657 6.5655 1.3193 13 16 5.5641 8.1359 0.8867 14 8 5.4556 8.9071 2.0752 15 8 6.7324 8.1143 0.0782 16 6 4.2433 8.6481 -0.1610 17 6 3.1851 9.3201 0.2949 18 6 2.9679 9.7295 1.7289 19 16 2.0838 9.6585 -1.0341 20 6 3.1497 8.8363 -2.1661 21 6 2.8904 8.6730 -3.6415 22 6 4.2224 8.3786 -1.5186 23 6 5.3276 7.6248 -2.2124 24 8 4.7608 6.6551 -3.0959 25 14 6.3750 8.8169 -3.1883 26 6 5.4583 2.9679 0.0001 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 4.0384 2.8559 2.2105 33 1 3.2297 4.3484 1.5628 34 1 4.3632 5.5681 -0.2899 35 1 6.1406 5.6426 -0.3485 36 1 5.0878 6.3433 2.2467 37 1 3.4955 10.6630 1.9243 38 1 1.9020 9.8700 1.9091 39 1 3.3487 8.9515 2.3905 40 1 2.3739 7.7294 -3.8175 41 1 2.2712 9.4975 -3.9951 42 1 3.8384 8.6741 -4.1794 43 1 5.9463 7.1216 -1.4694 44 1 4.2846 5.9438 -2.6460 45 1 7.0689 9.7538 -2.2686 46 1 7.3702 8.0716 -4.0002 47 1 5.8896 3.2412 -0.9630 48 1 5.9128 2.0757 0.4306 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16501620_15065288.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:43:56 Heat of formation + Delta-G solvation = -177.771146 kcal Electronic energy + Delta-G solvation = -36913.283827 eV Core-core repulsion = 31911.347604 eV Total energy + Delta-G solvation = -5001.936222 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 408.100 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -48.86239 -41.92637 -40.39769 -39.76075 -38.60412 -37.62879 -37.23264 -37.02457 -36.02279 -34.17754 -32.81917 -30.92206 -29.33733 -28.10092 -27.39976 -26.49465 -25.92307 -24.07312 -23.31195 -22.33816 -20.99408 -20.55524 -20.07176 -19.36204 -19.12829 -18.60770 -18.22676 -18.12654 -17.77615 -17.65381 -16.96974 -16.83192 -16.44586 -16.18709 -16.16384 -15.70987 -15.44806 -15.30108 -15.09297 -15.05322 -14.81311 -14.67879 -14.37206 -14.28058 -14.23495 -13.95128 -13.84133 -13.77574 -13.57583 -13.43430 -13.40935 -13.25297 -13.10924 -12.95301 -12.86803 -12.75653 -12.69965 -12.60199 -12.55736 -12.20094 -11.93649 -11.78872 -11.70199 -11.62792 -11.53622 -11.41640 -11.16492 -10.95851 -10.04759 -9.48347 -4.80264 -0.90360 -0.47152 0.33267 0.66698 0.79183 1.00248 1.45711 1.46402 1.79545 1.91365 2.16113 2.53755 2.64104 2.75623 2.85050 3.01325 3.11570 3.26626 3.36790 3.55674 3.66411 3.67929 3.78823 3.84686 3.87180 3.89898 3.95881 3.97905 4.05265 4.09274 4.19997 4.25909 4.27890 4.33238 4.42715 4.44997 4.48609 4.55394 4.60358 4.61836 4.64219 4.71125 4.85994 4.88538 4.92931 4.99742 5.03517 5.20127 5.34067 5.58969 6.35505 6.60403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.061 3.939 3 O -0.355 6.355 4 C 0.474 3.526 5 O -0.499 6.499 6 C -0.109 4.109 7 H 0.134 0.866 8 C -0.137 4.137 9 C 0.091 3.909 10 F -0.184 7.184 11 C 0.112 3.888 12 N -1.113 6.113 13 S 2.705 3.295 14 O -0.945 6.945 15 O -0.948 6.948 16 C -0.690 4.690 17 C -0.048 4.048 18 C -0.112 4.112 19 S 0.159 5.841 20 C -0.160 4.160 21 C -0.078 4.078 22 C -0.085 4.085 23 C -0.079 4.079 24 O -0.527 6.527 25 Si 0.738 3.262 26 C -0.132 4.132 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.425 0.575 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.359 0.641 45 H -0.239 1.239 46 H -0.248 1.248 47 H 0.099 0.901 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.897 -0.365 -1.861 8.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.272 6.272 4 C 0.316 3.684 5 O -0.386 6.386 6 C -0.128 4.128 7 H 0.152 0.848 8 C -0.175 4.175 9 C 0.071 3.929 10 F -0.164 7.164 11 C -0.015 4.015 12 N -0.873 5.873 13 S 2.793 3.207 14 O -0.935 6.935 15 O -0.937 6.937 16 C -0.790 4.790 17 C -0.169 4.169 18 C -0.170 4.170 19 S 0.425 5.575 20 C -0.278 4.278 21 C -0.136 4.136 22 C -0.096 4.096 23 C -0.189 4.189 24 O -0.332 6.332 25 Si 0.634 3.366 26 C -0.170 4.170 27 H 0.101 0.899 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.125 0.875 33 H 0.118 0.882 34 H 0.106 0.894 35 H 0.117 0.883 36 H 0.261 0.739 37 H 0.119 0.881 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.206 0.794 45 H -0.163 1.163 46 H -0.172 1.172 47 H 0.118 0.882 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.288 1.295 -2.523 7.821 hybrid contribution 0.366 -2.307 1.609 2.837 sum -6.922 -1.012 -0.913 7.055 Atomic orbital electron populations 1.21826 0.92213 1.03371 1.03678 1.23120 0.95677 0.79597 1.02886 1.86500 1.24066 1.32999 1.83639 1.23171 0.80863 0.91868 0.72495 1.90713 1.60526 1.42718 1.44685 1.22370 0.97207 0.92126 1.01126 0.84793 1.23698 0.96538 1.01138 0.96080 1.22305 0.88046 0.95006 0.87565 1.92913 1.65754 1.97290 1.60439 1.21757 1.03995 0.85121 0.90633 1.55420 1.90099 1.24086 1.17743 1.01661 0.73691 0.71983 0.73383 1.93620 1.86662 1.67538 1.45695 1.93562 1.44509 1.85625 1.70046 1.29423 1.20443 1.20025 1.09106 1.24575 0.95089 0.96387 1.00833 1.20927 1.03603 1.04801 0.87698 1.84494 1.22152 1.53517 0.97309 1.24413 0.98229 1.04291 1.00867 1.20398 1.03344 1.02720 0.87113 1.18539 0.97690 1.02629 0.90699 1.25635 0.97263 0.96714 0.99253 1.86827 1.74006 1.37914 1.34412 0.93780 0.78814 0.81202 0.82754 1.23692 0.93481 0.98783 1.01059 0.89917 0.91357 0.91310 0.90944 0.91021 0.87476 0.88175 0.89353 0.88257 0.73945 0.88078 0.90061 0.88420 0.89896 0.91214 0.89212 0.89201 0.79408 1.16317 1.17174 0.88233 0.86295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.40 10.29 37.16 0.38 0.78 16 2 C 0.06 -0.05 6.19 37.16 0.23 0.18 16 3 O -0.36 -0.02 10.22 -39.25 -0.40 -0.42 16 4 C 0.47 0.13 7.49 36.00 0.27 0.40 16 5 O -0.50 -1.73 15.65 -18.75 -0.29 -2.03 16 6 C -0.11 0.34 3.91 -90.82 -0.36 -0.01 16 7 H 0.13 -0.81 7.69 -51.93 -0.40 -1.21 16 8 C -0.14 0.46 7.09 -25.77 -0.18 0.28 16 9 C 0.09 -0.21 1.84 -89.79 -0.17 -0.37 16 10 F -0.18 -0.16 16.89 2.25 0.04 -0.12 16 11 C 0.11 -0.33 4.91 -4.05 -0.02 -0.35 16 12 N -1.11 1.91 5.82 -10.62 -0.06 1.85 16 13 S 2.70 3.63 5.34 -107.50 -0.57 3.06 16 14 O -0.94 -3.05 14.84 -57.17 -0.85 -3.90 16 15 O -0.95 -3.93 13.85 -57.17 -0.79 -4.72 16 16 C -0.69 -0.25 5.86 -41.21 -0.24 -0.50 16 17 C -0.05 0.02 6.50 -36.00 -0.23 -0.22 16 18 C -0.11 0.15 8.87 36.01 0.32 0.47 16 19 S 0.16 -0.20 23.31 -107.50 -2.51 -2.71 16 20 C -0.16 0.16 6.16 -36.00 -0.22 -0.06 16 21 C -0.08 0.21 8.95 36.00 0.32 0.53 16 22 C -0.09 0.01 4.22 -106.25 -0.45 -0.44 16 23 C -0.08 -0.02 2.10 36.01 0.08 0.06 16 24 O -0.53 0.94 10.87 -35.23 -0.38 0.56 16 25 Si 0.74 1.27 30.07 -169.99 -5.11 -3.84 16 26 C -0.13 0.32 6.89 -25.90 -0.18 0.14 16 27 H 0.08 -0.30 8.14 -51.93 -0.42 -0.72 16 28 H 0.07 -0.17 8.14 -51.93 -0.42 -0.60 16 29 H 0.07 -0.18 8.14 -51.93 -0.42 -0.60 16 30 H 0.07 -0.05 8.13 -51.93 -0.42 -0.48 16 31 H 0.07 -0.05 8.13 -51.93 -0.42 -0.47 16 32 H 0.11 -0.27 8.10 -51.92 -0.42 -0.69 16 33 H 0.10 -0.51 8.10 -51.93 -0.42 -0.93 16 34 H 0.09 -0.52 7.32 -51.93 -0.38 -0.90 16 35 H 0.10 -0.26 6.33 -51.93 -0.33 -0.59 16 36 H 0.42 -1.25 8.50 -34.47 -0.29 -1.55 16 37 H 0.10 -0.10 8.14 -51.93 -0.42 -0.52 16 38 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 39 H 0.10 -0.14 6.46 -51.93 -0.34 -0.48 16 40 H 0.08 -0.28 8.14 -51.93 -0.42 -0.71 16 41 H 0.07 -0.24 8.14 -51.93 -0.42 -0.67 16 42 H 0.09 -0.25 5.18 -51.93 -0.27 -0.52 16 43 H 0.09 0.02 2.72 -51.93 -0.14 -0.12 16 44 H 0.36 -1.94 9.07 45.56 0.41 -1.53 16 45 H -0.24 -1.11 7.11 56.52 0.40 -0.71 16 46 H -0.25 -0.95 7.11 56.52 0.40 -0.54 16 47 H 0.10 -0.39 8.10 -51.93 -0.42 -0.81 16 48 H 0.12 -0.07 7.44 -51.93 -0.39 -0.45 16 LS Contribution 410.63 15.07 6.19 6.19 Total: 0.00 -10.10 410.63 -11.58 -21.68 By element: Atomic # 1 Polarization: -10.09 SS G_CDS: -6.38 Total: -16.48 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -0.45 Total: 0.88 kcal Atomic # 7 Polarization: 1.91 SS G_CDS: -0.06 Total: 1.85 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: -2.72 Total: -10.51 kcal Atomic # 9 Polarization: -0.16 SS G_CDS: 0.04 Total: -0.12 kcal Atomic # 14 Polarization: 1.27 SS G_CDS: -5.11 Total: -3.84 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -3.08 Total: 0.35 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -10.10 -11.58 -21.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16501620_15065288.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.092 kcal (2) G-P(sol) polarization free energy of solvation -10.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds