Wall clock time and date at job start Mon Mar 8 2021 11:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45202 * 109.47363 * 2 1 4 4 C 1.34227 * 116.99880 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00057 * 0.02562 * 4 3 2 6 6 C 1.50699 * 119.99901 * 179.97438 * 4 3 2 7 7 H 1.09004 * 112.85216 * 311.20419 * 6 4 3 8 8 C 1.54057 * 113.69566 * 82.46612 * 6 4 3 9 9 C 1.53780 * 86.98551 * 139.99029 * 8 6 4 10 10 F 1.39900 * 113.61532 * 219.98068 * 9 8 6 11 11 C 1.52997 * 113.61426 * 89.16545 * 9 8 6 12 12 N 1.46494 * 109.47301 * 85.85848 * 11 9 8 13 13 S 1.65603 * 120.00312 * 164.72331 * 12 11 9 14 14 O 1.42093 * 106.40695 * 178.81891 * 13 12 11 15 15 O 1.42101 * 106.40006 * 311.74134 * 13 12 11 16 16 C 1.76203 * 107.21338 * 65.27866 * 13 12 11 17 17 C 1.33385 * 122.53695 * 96.15741 * 16 13 12 18 18 C 1.50701 * 125.20349 * 0.02562 * 17 16 13 19 19 S 1.75883 * 109.59484 * 179.90227 * 17 16 13 20 20 C 1.75887 * 90.96886 * 0.29921 * 19 17 16 21 21 C 1.50696 * 125.20477 * 179.79473 * 20 19 17 22 22 C 1.33390 * 109.59308 * 359.83188 * 20 19 17 23 23 C 1.50700 * 122.54082 * 179.97438 * 22 20 19 24 24 O 1.42900 * 109.46544 * 315.34905 * 23 22 20 25 25 Si 1.86296 * 109.47234 * 75.34961 * 23 22 20 26 26 C 1.53777 * 113.61633 * 180.02562 * 6 4 3 27 27 H 1.08994 * 109.47428 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47024 * 300.00006 * 1 2 3 29 29 H 1.09001 * 109.46946 * 60.00376 * 1 2 3 30 30 H 1.08994 * 109.47181 * 239.99769 * 2 1 3 31 31 H 1.09001 * 109.46946 * 119.99624 * 2 1 3 32 32 H 1.09009 * 113.60828 * 25.48883 * 8 6 4 33 33 H 1.08996 * 113.69980 * 254.51305 * 8 6 4 34 34 H 1.09004 * 109.46788 * 325.86385 * 11 9 8 35 35 H 1.08999 * 109.47554 * 205.86456 * 11 9 8 36 36 H 0.97004 * 120.00117 * 345.00801 * 12 11 9 37 37 H 1.08997 * 109.47756 * 83.78031 * 18 17 16 38 38 H 1.09005 * 109.46881 * 203.77847 * 18 17 16 39 39 H 1.09005 * 109.47088 * 323.77485 * 18 17 16 40 40 H 1.09003 * 109.47343 * 267.82545 * 21 20 19 41 41 H 1.08996 * 109.47393 * 27.82309 * 21 20 19 42 42 H 1.08992 * 109.47414 * 147.82454 * 21 20 19 43 43 H 1.08997 * 109.47309 * 195.35310 * 23 22 20 44 44 H 0.96701 * 114.00691 * 293.46695 * 24 23 22 45 45 H 1.48497 * 110.00184 * 65.16792 * 25 23 22 46 46 H 1.48497 * 109.99914 * 186.48998 * 25 23 22 47 47 H 1.09004 * 113.61216 * 105.38956 * 26 6 4 48 48 H 1.09001 * 113.61716 * 334.48756 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9373 0.0000 7 1 3.4716 3.5809 -0.7563 8 6 3.9859 3.5809 1.3982 9 6 5.3561 4.1443 0.9859 10 9 6.3097 4.1033 2.0087 11 6 5.2764 5.5109 0.3025 12 7 5.2657 6.5655 1.3193 13 16 5.5641 8.1359 0.8867 14 8 5.4556 8.9071 2.0752 15 8 6.7324 8.1143 0.0782 16 6 4.2433 8.6481 -0.1610 17 6 3.1851 9.3201 0.2949 18 6 2.9679 9.7295 1.7289 19 16 2.0838 9.6585 -1.0341 20 6 3.1497 8.8363 -2.1661 21 6 2.8904 8.6730 -3.6415 22 6 4.2224 8.3786 -1.5186 23 6 5.3276 7.6248 -2.2124 24 8 4.7608 6.6551 -3.0959 25 14 6.3750 8.8169 -3.1883 26 6 5.4583 2.9679 0.0001 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 4.0384 2.8559 2.2105 33 1 3.2297 4.3484 1.5628 34 1 4.3632 5.5681 -0.2899 35 1 6.1406 5.6426 -0.3485 36 1 5.0878 6.3433 2.2467 37 1 3.4955 10.6630 1.9243 38 1 1.9020 9.8700 1.9091 39 1 3.3487 8.9515 2.3905 40 1 2.3739 7.7294 -3.8175 41 1 2.2712 9.4975 -3.9951 42 1 3.8384 8.6741 -4.1794 43 1 5.9463 7.1216 -1.4694 44 1 4.2846 5.9438 -2.6460 45 1 7.0689 9.7538 -2.2686 46 1 7.3702 8.0716 -4.0002 47 1 5.8896 3.2412 -0.9630 48 1 5.9128 2.0757 0.4306 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16501620_15065288.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:43:55 Heat of formation + Delta-G solvation = -178.535212 kcal Electronic energy + Delta-G solvation = -36913.316959 eV Core-core repulsion = 31911.347604 eV Total energy + Delta-G solvation = -5001.969355 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 408.100 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -48.80321 -41.88676 -40.31477 -39.61344 -38.72942 -37.65633 -37.20069 -37.10900 -35.88831 -34.03186 -32.68641 -30.75348 -29.17423 -28.02431 -27.15756 -26.33365 -25.80019 -23.92199 -23.24567 -22.26417 -20.92923 -20.43158 -20.01307 -19.28492 -19.07700 -18.55678 -18.18078 -18.04403 -17.73571 -17.54453 -16.91415 -16.70481 -16.33535 -16.16615 -16.14738 -15.59395 -15.38434 -15.21191 -15.04116 -14.94904 -14.72092 -14.57657 -14.24969 -14.16110 -14.06542 -13.92097 -13.72301 -13.63099 -13.55733 -13.48267 -13.42594 -13.26855 -12.99209 -12.87346 -12.70866 -12.66775 -12.53416 -12.44104 -12.40711 -12.27642 -12.09410 -11.72041 -11.58029 -11.53707 -11.49037 -11.37742 -11.03743 -10.78278 -9.93093 -9.38518 -4.98295 -0.93323 -0.39468 0.44473 0.75903 0.82528 1.02285 1.37808 1.57152 1.69941 1.86632 2.01359 2.51147 2.85963 2.93130 3.05674 3.13380 3.23838 3.44891 3.47848 3.71807 3.79011 3.84091 3.96473 4.00438 4.03318 4.09881 4.13318 4.18840 4.22811 4.25835 4.31699 4.44178 4.51309 4.56983 4.64150 4.65847 4.72105 4.75765 4.79331 4.84914 4.89566 4.92200 4.98908 5.08803 5.13637 5.13836 5.24815 5.41790 5.42185 5.78614 6.62170 6.72979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.355 6.355 4 C 0.472 3.528 5 O -0.540 6.540 6 C -0.100 4.100 7 H 0.174 0.826 8 C -0.132 4.132 9 C 0.088 3.912 10 F -0.206 7.206 11 C 0.103 3.897 12 N -1.104 6.104 13 S 2.711 3.289 14 O -0.971 6.971 15 O -0.983 6.983 16 C -0.693 4.693 17 C -0.056 4.056 18 C -0.118 4.118 19 S 0.186 5.814 20 C -0.155 4.155 21 C -0.082 4.082 22 C -0.097 4.097 23 C -0.068 4.068 24 O -0.527 6.527 25 Si 0.777 3.223 26 C -0.137 4.137 27 H 0.093 0.907 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.096 0.904 36 H 0.431 0.569 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.381 0.619 45 H -0.288 1.288 46 H -0.280 1.280 47 H 0.117 0.883 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.556 -0.227 -2.770 10.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.272 6.272 4 C 0.316 3.684 5 O -0.429 6.429 6 C -0.119 4.119 7 H 0.192 0.808 8 C -0.169 4.169 9 C 0.069 3.931 10 F -0.186 7.186 11 C -0.023 4.023 12 N -0.867 5.867 13 S 2.802 3.198 14 O -0.962 6.962 15 O -0.973 6.973 16 C -0.795 4.795 17 C -0.177 4.177 18 C -0.177 4.177 19 S 0.452 5.548 20 C -0.273 4.273 21 C -0.140 4.140 22 C -0.108 4.108 23 C -0.180 4.180 24 O -0.334 6.334 25 Si 0.681 3.319 26 C -0.175 4.175 27 H 0.112 0.888 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.114 0.886 36 H 0.268 0.732 37 H 0.112 0.888 38 H 0.120 0.880 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.098 0.902 42 H 0.109 0.891 43 H 0.107 0.893 44 H 0.231 0.769 45 H -0.216 1.216 46 H -0.206 1.206 47 H 0.135 0.865 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.958 1.429 -3.423 10.626 hybrid contribution 1.199 -2.363 1.877 3.247 sum -8.759 -0.934 -1.546 8.943 Atomic orbital electron populations 1.21822 0.90643 1.04194 1.03866 1.23246 0.96933 0.79387 1.02410 1.86511 1.24014 1.33333 1.83337 1.23870 0.80620 0.92792 0.71111 1.90699 1.61283 1.44332 1.46630 1.22567 0.96352 0.90602 1.02338 0.80846 1.23698 0.96406 1.01290 0.95552 1.22483 0.88089 0.95420 0.87158 1.92868 1.66805 1.97413 1.61558 1.22047 1.05855 0.83933 0.90429 1.55133 1.89983 1.23184 1.18443 1.01096 0.73563 0.72402 0.72771 1.93580 1.87092 1.68713 1.46774 1.93525 1.46739 1.86319 1.70731 1.29188 1.20146 1.21013 1.09151 1.24735 0.95241 0.96132 1.01617 1.21015 1.04882 1.04419 0.87344 1.84432 1.21214 1.52759 0.96349 1.24677 0.97749 1.03176 1.01729 1.20539 1.03735 1.03928 0.85836 1.18467 0.98053 1.03695 0.90541 1.25232 0.97428 0.96767 0.98575 1.86771 1.74221 1.38248 1.34174 0.93384 0.78425 0.79455 0.80653 1.23691 0.94337 0.97755 1.01745 0.88831 0.91217 0.90969 0.91350 0.91696 0.88790 0.85665 0.85562 0.88630 0.73186 0.88814 0.88036 0.88478 0.88455 0.90165 0.89141 0.89253 0.76942 1.21551 1.20631 0.86473 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.88 10.29 71.98 0.74 1.62 16 2 C 0.05 -0.08 6.19 71.98 0.45 0.37 16 3 O -0.36 0.16 10.22 -51.39 -0.53 -0.36 16 4 C 0.47 0.16 7.49 71.24 0.53 0.70 16 5 O -0.54 -4.36 15.65 21.97 0.34 -4.01 16 6 C -0.10 0.78 3.91 -10.92 -0.04 0.74 16 7 H 0.17 -2.77 7.69 -2.39 -0.02 -2.79 16 8 C -0.13 1.04 7.09 31.21 0.22 1.27 16 9 C 0.09 -0.45 1.84 -10.25 -0.02 -0.47 16 10 F -0.21 -0.53 16.89 44.97 0.76 0.23 16 11 C 0.10 -0.75 4.91 86.38 0.42 -0.33 16 12 N -1.10 4.17 5.82 -187.50 -1.09 3.08 16 13 S 2.71 8.83 5.34 -56.49 -0.30 8.52 16 14 O -0.97 -7.33 14.84 -128.00 -1.90 -9.23 16 15 O -0.98 -9.58 13.85 -128.00 -1.77 -11.35 16 16 C -0.69 -0.08 5.86 21.21 0.12 0.04 16 17 C -0.06 0.10 6.50 24.59 0.16 0.25 16 18 C -0.12 0.38 8.87 71.24 0.63 1.01 16 19 S 0.19 -0.83 23.31 -56.49 -1.32 -2.15 16 20 C -0.16 0.62 6.16 24.59 0.15 0.77 16 21 C -0.08 0.64 8.95 71.23 0.64 1.28 16 22 C -0.10 0.13 4.22 -20.92 -0.09 0.04 16 23 C -0.07 0.03 2.10 71.24 0.15 0.18 16 24 O -0.53 3.10 10.87 -148.98 -1.62 1.48 16 25 Si 0.78 3.58 30.07 68.60 2.06 5.64 16 26 C -0.14 0.70 6.89 31.13 0.21 0.91 16 27 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 28 H 0.07 -0.41 8.14 -2.39 -0.02 -0.43 16 29 H 0.07 -0.46 8.14 -2.39 -0.02 -0.47 16 30 H 0.07 -0.06 8.13 -2.39 -0.02 -0.08 16 31 H 0.06 -0.02 8.13 -2.39 -0.02 -0.04 16 32 H 0.09 -0.46 8.10 -2.38 -0.02 -0.48 16 33 H 0.13 -1.61 8.10 -2.39 -0.02 -1.63 16 34 H 0.13 -1.91 7.32 -2.39 -0.02 -1.93 16 35 H 0.10 -0.58 6.33 -2.39 -0.02 -0.59 16 36 H 0.43 -2.60 8.50 -96.74 -0.82 -3.43 16 37 H 0.09 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H 0.10 -0.79 8.14 -2.38 -0.02 -0.81 16 39 H 0.10 -0.30 6.46 -2.38 -0.02 -0.32 16 40 H 0.10 -0.99 8.14 -2.39 -0.02 -1.01 16 41 H 0.08 -0.77 8.14 -2.39 -0.02 -0.79 16 42 H 0.09 -0.67 5.18 -2.39 -0.01 -0.68 16 43 H 0.09 0.02 2.72 -2.39 -0.01 0.01 16 44 H 0.38 -5.53 9.07 -74.06 -0.67 -6.21 16 45 H -0.29 -3.61 7.11 99.48 0.71 -2.90 16 46 H -0.28 -2.67 7.11 99.48 0.71 -1.97 16 47 H 0.12 -1.05 8.10 -2.39 -0.02 -1.07 16 48 H 0.09 0.04 7.44 -2.39 -0.02 0.02 16 Total: 0.00 -26.80 410.63 -1.49 -28.30 By element: Atomic # 1 Polarization: -28.11 SS G_CDS: -0.42 Total: -28.53 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 4.28 Total: 8.38 kcal Atomic # 7 Polarization: 4.17 SS G_CDS: -1.09 Total: 3.08 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -5.47 Total: -23.48 kcal Atomic # 9 Polarization: -0.53 SS G_CDS: 0.76 Total: 0.23 kcal Atomic # 14 Polarization: 3.58 SS G_CDS: 2.06 Total: 5.64 kcal Atomic # 16 Polarization: 7.99 SS G_CDS: -1.62 Total: 6.37 kcal Total: -26.80 -1.49 -28.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16501620_15065288.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.240 kcal (2) G-P(sol) polarization free energy of solvation -26.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds