Wall clock time and date at job start Mon Mar 8 2021 11:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 O 1.45200 * 109.47113 * 2 1 4 4 C 1.34226 * 116.99601 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00248 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99748 * 179.97438 * 4 3 2 7 7 H 1.09004 * 112.90427 * 48.75608 * 6 4 3 8 8 C 1.53783 * 113.61208 * 180.02562 * 6 4 3 9 9 C 1.53777 * 87.17408 * 89.16266 * 8 6 4 10 10 F 1.39897 * 113.61351 * 270.84444 * 9 8 6 11 11 C 1.52995 * 113.61645 * 140.01932 * 9 8 6 12 12 N 1.46497 * 109.47245 * 179.97438 * 11 9 8 13 13 S 1.65601 * 120.00113 * 164.04717 * 12 11 9 14 14 O 1.42096 * 106.40428 * 177.81849 * 13 12 11 15 15 O 1.42104 * 106.40045 * 310.72998 * 13 12 11 16 16 C 1.76192 * 107.21907 * 64.27186 * 13 12 11 17 17 C 1.38218 * 120.00106 * 64.19798 * 16 13 12 18 18 C 1.50699 * 119.99676 * 359.97438 * 17 16 13 19 19 O 1.42900 * 109.47024 * 284.12162 * 18 17 16 20 20 Si 1.86295 * 109.46977 * 164.12188 * 18 17 16 21 21 C 1.38258 * 120.00160 * 179.74178 * 17 16 13 22 22 C 1.38211 * 119.99524 * 0.55352 * 21 17 16 23 23 C 1.38262 * 120.00580 * 359.69622 * 22 21 17 24 24 C 1.38213 * 119.99683 * 0.02731 * 23 22 21 25 25 C 1.53785 * 87.08245 * 25.38718 * 9 8 6 26 26 H 1.09000 * 109.46857 * 300.00189 * 1 2 3 27 27 H 1.09004 * 109.46663 * 59.99649 * 1 2 3 28 28 H 1.09001 * 109.47218 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46684 * 240.00337 * 2 1 3 30 30 H 1.08995 * 109.46665 * 120.00146 * 2 1 3 31 31 H 1.08997 * 113.61585 * 334.57005 * 8 6 4 32 32 H 1.09008 * 113.61027 * 203.75286 * 8 6 4 33 33 H 1.09001 * 109.47245 * 300.00351 * 11 9 8 34 34 H 1.09008 * 109.46957 * 59.99984 * 11 9 8 35 35 H 0.97004 * 120.00190 * 344.04653 * 12 11 9 36 36 H 1.09000 * 109.47611 * 44.11906 * 18 17 16 37 37 H 0.96699 * 114.00488 * 180.02562 * 19 18 17 38 38 H 1.48498 * 110.00248 * 298.67916 * 20 18 17 39 39 H 1.48499 * 110.00050 * 60.00001 * 20 18 17 40 40 H 1.07993 * 120.00171 * 180.27686 * 21 17 16 41 41 H 1.08006 * 119.99884 * 179.72683 * 22 21 17 42 42 H 1.08001 * 120.00229 * 179.97438 * 23 22 21 43 43 H 1.07993 * 120.00018 * 179.97438 * 24 23 22 44 44 H 1.09006 * 113.61291 * 89.11327 * 25 9 8 45 45 H 1.08992 * 113.61854 * 220.01854 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9209 2.9373 0.0000 7 1 3.4710 3.5828 0.7544 8 6 5.4584 2.9679 0.0001 9 6 5.3831 2.9433 -1.5357 10 9 5.3623 1.6527 -2.0751 11 6 6.4079 3.8545 -2.2142 12 7 6.2572 3.7611 -3.6684 13 16 6.9428 4.9075 -4.6472 14 8 6.6649 4.5123 -5.9836 15 8 6.5625 6.1690 -4.1149 16 6 8.6891 4.7884 -4.4460 17 6 9.3524 3.6388 -4.8319 18 6 8.5819 2.4871 -5.4242 19 8 7.8878 1.7938 -4.3851 20 14 9.7622 1.3194 -6.2690 21 6 10.7235 3.5474 -4.6789 22 6 11.4292 4.6011 -4.1295 23 6 10.7650 5.7491 -3.7387 24 6 9.3952 5.8427 -3.8969 25 6 3.9883 3.5763 -1.3991 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.9129 2.0750 0.4293 32 1 5.8767 3.8908 0.4020 33 1 6.2446 4.8845 -1.8970 34 1 7.4138 3.5428 -1.9328 35 1 5.7557 3.0278 -4.0580 36 1 7.8633 2.8661 -6.1509 37 1 7.3697 1.0382 -4.6944 38 1 10.4672 2.0198 -7.3724 39 1 10.7471 0.7955 -5.2888 40 1 11.2423 2.6509 -4.9845 41 1 12.4997 4.5280 -4.0059 42 1 11.3165 6.5723 -3.3090 43 1 8.8763 6.7391 -3.5913 44 1 4.0033 4.6661 -1.3796 45 1 3.2560 3.1746 -2.0993 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16501620_2726874.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 11:44:00 Heat of formation + Delta-G solvation = -167.772392 kcal Electronic energy + Delta-G solvation = -33814.846485 eV Core-core repulsion = 29035.266833 eV Total energy + Delta-G solvation = -4779.579652 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.112 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -48.68544 -41.67311 -40.71724 -39.28683 -38.44426 -37.58929 -37.33132 -36.87145 -35.76947 -33.03956 -32.68882 -32.50126 -29.38028 -27.17658 -26.96833 -25.89750 -24.50448 -23.77921 -22.75366 -22.33460 -20.80884 -20.37557 -19.19164 -18.81820 -18.49803 -18.37800 -17.81051 -17.57983 -17.37680 -17.16594 -16.79732 -16.76386 -16.39667 -16.03971 -15.82565 -15.32673 -15.25684 -15.04472 -14.91791 -14.72528 -14.55134 -14.15592 -14.05398 -13.91795 -13.69063 -13.59931 -13.52196 -13.33903 -13.30094 -13.08315 -13.01750 -12.99692 -12.85737 -12.62124 -12.47697 -12.19859 -12.12938 -11.72210 -11.52374 -11.48453 -11.44542 -11.33858 -10.60098 -10.48870 -10.36421 -10.14324 -5.04322 -0.64968 -0.33429 0.03183 1.16212 1.20960 1.57967 1.60171 1.85946 1.87986 2.26370 2.67454 2.90533 2.98675 3.10950 3.19561 3.26998 3.40923 3.46501 3.65386 3.70804 3.80329 3.81790 3.97266 4.01997 4.03270 4.08707 4.17730 4.23611 4.31254 4.37609 4.38376 4.40833 4.47732 4.55513 4.57361 4.65501 4.70302 4.77905 4.81598 4.82118 4.91237 5.03107 5.03800 5.12644 5.15711 5.50605 5.61047 5.95673 6.47650 6.80554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.062 3.938 3 O -0.356 6.356 4 C 0.475 3.525 5 O -0.490 6.490 6 C -0.115 4.115 7 H 0.125 0.875 8 C -0.136 4.136 9 C 0.092 3.908 10 F -0.171 7.171 11 C 0.117 3.883 12 N -1.095 6.095 13 S 2.702 3.298 14 O -0.955 6.955 15 O -0.958 6.958 16 C -0.661 4.661 17 C 0.037 3.963 18 C -0.133 4.133 19 O -0.533 6.533 20 Si 0.702 3.298 21 C -0.145 4.145 22 C -0.056 4.056 23 C -0.135 4.135 24 C -0.021 4.021 25 C -0.138 4.138 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.118 0.882 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.423 0.577 36 H 0.111 0.889 37 H 0.387 0.613 38 H -0.253 1.253 39 H -0.249 1.249 40 H 0.130 0.870 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.148 0.852 44 H 0.121 0.879 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.690 -0.801 2.142 2.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.273 6.273 4 C 0.317 3.683 5 O -0.376 6.376 6 C -0.134 4.134 7 H 0.143 0.857 8 C -0.174 4.174 9 C 0.072 3.928 10 F -0.151 7.151 11 C -0.010 4.010 12 N -0.856 5.856 13 S 2.791 3.209 14 O -0.945 6.945 15 O -0.947 6.947 16 C -0.747 4.747 17 C 0.036 3.964 18 C -0.243 4.243 19 O -0.340 6.340 20 Si 0.603 3.397 21 C -0.164 4.164 22 C -0.074 4.074 23 C -0.154 4.154 24 C -0.040 4.040 25 C -0.176 4.176 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.100 0.900 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.136 0.864 33 H 0.116 0.884 34 H 0.099 0.901 35 H 0.260 0.740 36 H 0.128 0.872 37 H 0.236 0.764 38 H -0.178 1.178 39 H -0.174 1.174 40 H 0.148 0.852 41 H 0.153 0.847 42 H 0.156 0.844 43 H 0.166 0.834 44 H 0.140 0.860 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.297 -0.146 1.813 1.843 hybrid contribution 0.520 -0.404 0.335 0.739 sum 0.818 -0.550 2.148 2.363 Atomic orbital electron populations 1.21826 0.92332 1.03258 1.03653 1.23083 0.95541 0.79716 1.02791 1.86481 1.24107 1.32831 1.83920 1.22903 0.80863 0.91681 0.72859 1.90709 1.60358 1.42556 1.43964 1.22043 0.97616 0.91992 1.01738 0.85696 1.23582 0.93549 1.06000 0.94237 1.21952 0.96641 0.80153 0.94101 1.92921 1.97193 1.38155 1.86848 1.21665 0.99618 1.00296 0.79427 1.55084 1.68973 1.45929 1.15651 1.01678 0.73297 0.72898 0.73032 1.93566 1.84038 1.82739 1.34168 1.93587 1.81198 1.39886 1.80079 1.30795 1.27158 1.01662 1.15128 1.18878 0.93494 0.91941 0.92119 1.25339 1.04625 0.98518 0.95807 1.86520 1.67036 1.47668 1.32796 0.94677 0.79608 0.85599 0.79862 1.21189 0.93861 0.99759 1.01557 1.21474 1.00530 0.92376 0.93059 1.21396 0.94543 0.98541 1.00875 1.21087 0.94773 0.96570 0.91550 1.23699 0.96428 1.02672 0.94793 0.91383 0.91354 0.89995 0.91026 0.91114 0.88037 0.86394 0.88433 0.90138 0.74018 0.87180 0.76415 1.17769 1.17385 0.85224 0.84658 0.84380 0.83395 0.86045 0.89036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.24 10.29 37.16 0.38 0.62 16 2 C 0.06 0.03 6.19 37.16 0.23 0.26 16 3 O -0.36 -0.61 10.22 -39.25 -0.40 -1.01 16 4 C 0.48 0.95 6.93 36.01 0.25 1.20 16 5 O -0.49 -2.36 14.48 -18.75 -0.27 -2.63 16 6 C -0.11 0.16 4.46 -90.86 -0.41 -0.25 16 7 H 0.13 -0.44 8.14 -51.93 -0.42 -0.86 16 8 C -0.14 0.26 6.92 -25.92 -0.18 0.08 16 9 C 0.09 -0.09 1.73 -89.81 -0.16 -0.24 16 10 F -0.17 -0.32 14.96 2.25 0.03 -0.29 16 11 C 0.12 -0.18 5.91 -4.05 -0.02 -0.20 16 12 N -1.09 0.56 4.20 -10.61 -0.04 0.52 16 13 S 2.70 5.51 5.06 -107.50 -0.54 4.97 16 14 O -0.96 -4.07 15.54 -57.18 -0.89 -4.96 16 15 O -0.96 -3.75 16.45 -57.18 -0.94 -4.69 16 16 C -0.66 -1.36 5.86 -39.58 -0.23 -1.59 16 17 C 0.04 0.08 5.28 -104.62 -0.55 -0.47 16 18 C -0.13 -0.05 2.02 36.01 0.07 0.02 16 19 O -0.53 0.54 10.59 -35.23 -0.37 0.16 16 20 Si 0.70 -0.50 30.22 -169.99 -5.14 -5.63 16 21 C -0.15 -0.26 8.66 -39.58 -0.34 -0.60 16 22 C -0.06 -0.02 10.05 -39.58 -0.40 -0.42 16 23 C -0.13 0.00 10.05 -39.58 -0.40 -0.40 16 24 C -0.02 -0.02 9.55 -39.58 -0.38 -0.40 16 25 C -0.14 0.29 7.11 -25.83 -0.18 0.11 16 26 H 0.07 -0.11 8.14 -51.93 -0.42 -0.53 16 27 H 0.07 -0.10 8.14 -51.93 -0.42 -0.53 16 28 H 0.08 -0.23 8.14 -51.93 -0.42 -0.65 16 29 H 0.07 0.04 8.13 -51.93 -0.42 -0.38 16 30 H 0.07 0.03 8.13 -51.93 -0.42 -0.39 16 31 H 0.10 0.00 7.43 -51.93 -0.39 -0.39 16 32 H 0.12 -0.56 8.10 -51.92 -0.42 -0.98 16 33 H 0.10 -0.29 7.56 -51.93 -0.39 -0.69 16 34 H 0.08 -0.12 8.14 -51.92 -0.42 -0.55 16 35 H 0.42 -0.62 7.72 -34.47 -0.27 -0.89 16 36 H 0.11 0.06 5.37 -51.93 -0.28 -0.22 16 37 H 0.39 -1.92 8.74 45.56 0.40 -1.52 16 38 H -0.25 -0.51 7.11 56.52 0.40 -0.11 16 39 H -0.25 -0.36 6.73 56.52 0.38 0.02 16 40 H 0.13 0.14 4.91 -52.49 -0.26 -0.12 16 41 H 0.14 -0.29 8.06 -52.48 -0.42 -0.71 16 42 H 0.14 -0.35 8.06 -52.49 -0.42 -0.78 16 43 H 0.15 -0.05 7.34 -52.49 -0.39 -0.44 16 44 H 0.12 -0.50 7.97 -51.93 -0.41 -0.91 16 45 H 0.09 -0.14 8.10 -51.93 -0.42 -0.56 16 LS Contribution 382.91 15.07 5.77 5.77 Total: 0.00 -11.29 382.91 -10.96 -22.25 By element: Atomic # 1 Polarization: -6.32 SS G_CDS: -5.85 Total: -12.17 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -2.31 Total: -2.28 kcal Atomic # 7 Polarization: 0.56 SS G_CDS: -0.04 Total: 0.52 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: -2.87 Total: -13.13 kcal Atomic # 9 Polarization: -0.32 SS G_CDS: 0.03 Total: -0.29 kcal Atomic # 14 Polarization: -0.50 SS G_CDS: -5.14 Total: -5.63 kcal Atomic # 16 Polarization: 5.51 SS G_CDS: -0.54 Total: 4.97 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -11.29 -10.96 -22.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16501620_2726874.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.526 kcal (2) G-P(sol) polarization free energy of solvation -11.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds