Wall clock time and date at job start Mon Mar 8 2021 09:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45204 * 109.47219 * 2 1 4 4 C 1.34231 * 116.99749 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00427 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99568 * 179.97438 * 4 3 2 7 7 H 1.09001 * 112.84969 * 311.19529 * 6 4 3 8 8 C 1.53784 * 113.61229 * 82.50402 * 6 4 3 9 9 C 1.53775 * 87.07963 * 139.97791 * 8 6 4 10 10 F 1.39907 * 113.61176 * 89.11488 * 9 8 6 11 11 C 1.52998 * 113.69022 * 220.00548 * 9 8 6 12 12 S 1.81403 * 109.47075 * 282.53406 * 11 9 8 13 13 O 1.42097 * 110.54792 * 291.62541 * 12 11 9 14 14 O 1.42105 * 110.54269 * 68.37795 * 12 11 9 15 15 O 1.52203 * 104.45114 * 179.97438 * 12 11 9 16 16 C 1.35990 * 113.99466 * 74.12450 * 15 12 11 17 17 C 1.38673 * 120.00355 * 262.75688 * 16 15 12 18 18 C 1.50695 * 119.99904 * 359.97438 * 17 16 15 19 19 O 1.42901 * 109.47410 * 253.42918 * 18 17 16 20 20 Si 1.86305 * 109.47257 * 133.42891 * 18 17 16 21 21 C 1.38146 * 120.00148 * 180.02562 * 17 16 15 22 22 C 1.38678 * 120.00002 * 0.02562 * 21 17 16 23 23 O 1.35986 * 120.00132 * 179.97438 * 22 21 17 24 24 C 1.42899 * 117.00085 * 359.97438 * 23 22 21 25 25 C 1.38720 * 119.99757 * 359.97438 * 22 21 17 26 26 C 1.50704 * 119.99905 * 180.02562 * 25 22 21 27 27 C 1.38111 * 120.00366 * 359.72151 * 25 22 21 28 28 C 1.53777 * 113.61128 * 179.97438 * 6 4 3 29 29 H 1.08997 * 109.46958 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46901 * 300.00134 * 1 2 3 31 31 H 1.09003 * 109.46795 * 60.00377 * 1 2 3 32 32 H 1.09003 * 109.46795 * 119.99623 * 2 1 3 33 33 H 1.08996 * 109.47457 * 239.99427 * 2 1 3 34 34 H 1.09000 * 113.60953 * 254.53030 * 8 6 4 35 35 H 1.08998 * 113.61770 * 25.43038 * 8 6 4 36 36 H 1.08994 * 109.47228 * 42.53623 * 11 9 8 37 37 H 1.09001 * 109.46998 * 162.54217 * 11 9 8 38 38 H 1.09004 * 109.47100 * 13.42893 * 18 17 16 39 39 H 0.96697 * 113.99923 * 66.49277 * 19 18 17 40 40 H 1.48493 * 109.99810 * 300.00147 * 20 18 17 41 41 H 1.48502 * 109.99553 * 61.31910 * 20 18 17 42 42 H 1.08006 * 120.00345 * 180.02562 * 21 17 16 43 43 H 1.09009 * 109.46859 * 59.99833 * 24 23 22 44 44 H 1.08995 * 109.47274 * 179.97438 * 24 23 22 45 45 H 1.09004 * 109.46890 * 300.00188 * 24 23 22 46 46 H 1.08999 * 109.47447 * 89.99262 * 26 25 22 47 47 H 1.08999 * 109.47197 * 210.00031 * 26 25 22 48 48 H 1.09003 * 109.46862 * 329.99558 * 26 25 22 49 49 H 1.07994 * 120.00206 * 180.29481 * 27 25 22 50 50 H 1.09001 * 113.61910 * 334.56475 * 28 6 4 51 51 H 1.09002 * 113.61759 * 105.38691 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.4716 3.5809 -0.7564 8 6 3.9857 3.5777 1.3967 9 6 5.3560 4.1429 0.9876 10 9 5.2831 5.3935 0.3645 11 6 6.3989 4.0964 2.1061 12 16 6.0858 5.4424 3.2813 13 8 6.3527 6.7018 2.6798 14 8 4.8777 5.2118 3.9931 15 8 7.1753 5.2896 4.3330 16 6 8.4074 5.6844 3.9141 17 6 9.3146 4.7457 3.4462 18 6 8.9352 3.2879 3.4024 19 8 9.6187 2.5863 4.4430 20 14 9.4147 2.5708 1.7511 21 6 10.5664 5.1467 3.0213 22 6 10.9160 6.4881 3.0631 23 8 12.1485 6.8828 2.6453 24 6 13.0321 5.8624 2.1763 25 6 10.0086 7.4271 3.5311 26 6 10.3883 8.8848 3.5760 27 6 8.7549 7.0270 3.9501 28 6 5.4583 2.9680 0.0013 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5138 0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 3.2285 4.3443 1.5611 35 1 4.0374 2.8516 2.2080 36 1 6.3339 3.1395 2.6239 37 1 7.3952 4.2116 1.6790 38 1 7.8589 3.1882 3.5432 39 1 9.3430 2.8391 5.3346 40 1 8.7105 3.2918 0.6606 41 1 10.8840 2.6719 1.5609 42 1 11.2728 4.4157 2.6565 43 1 12.5817 5.3559 1.3225 44 1 13.9781 6.3117 1.8741 45 1 13.2104 5.1413 2.9740 46 1 10.1167 9.3603 2.6336 47 1 9.8599 9.3729 4.3949 48 1 11.4633 8.9756 3.7321 49 1 8.0468 7.7586 4.3100 50 1 5.9125 2.0753 0.4314 51 1 5.8905 3.2409 -0.9614 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16525070_16464788.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:24:36 Heat of formation + Delta-G solvation = -235.730564 kcal Electronic energy + Delta-G solvation = -41199.620161 eV Core-core repulsion = 35689.617530 eV Total energy + Delta-G solvation = -5510.002632 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 419.132 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -49.20696 -42.70745 -41.81690 -40.96356 -39.45007 -38.68963 -38.40504 -37.62648 -37.46508 -37.26478 -34.35343 -32.92412 -32.25924 -31.12899 -29.51442 -28.75007 -27.45178 -27.03712 -25.73760 -24.33919 -24.03333 -23.14054 -22.33992 -21.33671 -20.96722 -19.65997 -19.35501 -19.21878 -18.95228 -18.68404 -18.45462 -17.84722 -17.64236 -17.47794 -17.20725 -17.07055 -16.56936 -16.33380 -16.25698 -16.06228 -16.01182 -15.71201 -15.43101 -15.10876 -14.77668 -14.68210 -14.64639 -14.50235 -14.44880 -14.17535 -14.12890 -13.89244 -13.80886 -13.79748 -13.35752 -13.27420 -13.23149 -13.16447 -13.12306 -13.03914 -13.00710 -12.92838 -12.70720 -12.60541 -12.55121 -12.25982 -12.17190 -11.96056 -11.56736 -11.56306 -11.52017 -11.41724 -11.39865 -10.25280 -9.47975 -5.17160 -1.29930 -0.30548 -0.11757 0.82969 0.95249 1.04721 1.31050 1.52473 1.63882 1.93968 2.08060 2.25910 2.49825 2.56229 2.64115 2.88841 2.98180 3.02753 3.05611 3.31088 3.39816 3.48674 3.53550 3.64481 3.70314 3.72177 3.84993 3.89336 3.92821 3.96350 3.98919 4.08683 4.14554 4.19751 4.21312 4.25775 4.26608 4.35959 4.39947 4.47109 4.49372 4.55500 4.66733 4.68407 4.68492 4.77983 4.78167 4.88107 4.99820 5.02417 5.10869 5.33567 5.39601 5.97732 6.26232 6.65396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.061 3.939 3 O -0.353 6.353 4 C 0.476 3.524 5 O -0.501 6.501 6 C -0.108 4.108 7 H 0.138 0.862 8 C -0.146 4.146 9 C 0.105 3.895 10 F -0.169 7.169 11 C -0.692 4.692 12 S 2.589 3.411 13 O -0.929 6.929 14 O -0.910 6.910 15 O -0.652 6.652 16 C 0.031 3.969 17 C -0.085 4.085 18 C -0.093 4.093 19 O -0.524 6.524 20 Si 0.737 3.263 21 C -0.183 4.183 22 C 0.154 3.846 23 O -0.302 6.302 24 C 0.019 3.981 25 C -0.092 4.092 26 C -0.110 4.110 27 C -0.047 4.047 28 C -0.123 4.123 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.166 0.834 37 H 0.147 0.853 38 H 0.070 0.930 39 H 0.374 0.626 40 H -0.233 1.233 41 H -0.243 1.243 42 H 0.149 0.851 43 H 0.058 0.942 44 H 0.110 0.890 45 H 0.062 0.938 46 H 0.080 0.920 47 H 0.074 0.926 48 H 0.078 0.922 49 H 0.155 0.845 50 H 0.124 0.876 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.021 -3.003 -1.461 3.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.013 4.013 3 O -0.270 6.270 4 C 0.318 3.682 5 O -0.388 6.388 6 C -0.127 4.127 7 H 0.156 0.844 8 C -0.184 4.184 9 C 0.085 3.915 10 F -0.149 7.149 11 C -0.815 4.815 12 S 2.682 3.318 13 O -0.927 6.927 14 O -0.909 6.909 15 O -0.611 6.611 16 C -0.011 4.011 17 C -0.088 4.088 18 C -0.201 4.201 19 O -0.329 6.329 20 Si 0.633 3.367 21 C -0.202 4.202 22 C 0.107 3.893 23 O -0.214 6.214 24 C -0.075 4.075 25 C -0.093 4.093 26 C -0.167 4.167 27 C -0.067 4.067 28 C -0.161 4.161 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.129 0.871 35 H 0.137 0.863 36 H 0.184 0.816 37 H 0.165 0.835 38 H 0.088 0.912 39 H 0.222 0.778 40 H -0.157 1.157 41 H -0.167 1.167 42 H 0.167 0.833 43 H 0.077 0.923 44 H 0.128 0.872 45 H 0.080 0.920 46 H 0.099 0.901 47 H 0.093 0.907 48 H 0.097 0.903 49 H 0.172 0.828 50 H 0.142 0.858 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.594 -2.760 -2.255 4.408 hybrid contribution -0.118 0.286 0.709 0.774 sum 2.476 -2.474 -1.546 3.826 Atomic orbital electron populations 1.21831 0.92238 1.03327 1.03767 1.23128 0.95713 0.79590 1.02859 1.86522 1.24006 1.32987 1.83489 1.23181 0.80916 0.91764 0.72353 1.90688 1.60509 1.42650 1.44980 1.22461 0.97092 0.92188 1.00940 0.84380 1.23819 0.95840 1.01988 0.96717 1.21138 0.95186 0.82334 0.92806 1.93015 1.96981 1.41477 1.83422 1.31760 1.09802 1.24430 1.15545 1.05868 0.74855 0.76260 0.74808 1.93683 1.83157 1.37617 1.78256 1.93679 1.42001 1.86276 1.68897 1.85765 1.28617 1.86433 1.60275 1.17658 0.82435 0.93062 1.07943 1.20169 0.93968 0.96121 0.98570 1.25789 0.99881 0.89835 1.04629 1.86739 1.65638 1.63438 1.17109 0.93242 0.82096 0.90214 0.71112 1.21073 0.97342 0.95492 1.06248 1.18949 0.85474 0.91803 0.93121 1.86153 1.21716 1.36374 1.77147 1.23257 0.93372 0.91697 0.99207 1.19256 0.91731 0.96896 1.01399 1.20730 1.03057 0.89525 1.03365 1.21166 0.95863 0.93853 0.95829 1.23612 0.93877 0.97778 1.00867 0.89934 0.91263 0.91333 0.90930 0.90972 0.87096 0.86307 0.81647 0.83479 0.91233 0.77775 1.15742 1.16739 0.83334 0.92337 0.87161 0.91970 0.90139 0.90682 0.90273 0.82757 0.85783 0.87970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.30 10.29 37.16 0.38 0.68 16 2 C 0.06 -0.02 6.19 37.16 0.23 0.21 16 3 O -0.35 -0.37 10.22 -39.26 -0.40 -0.77 16 4 C 0.48 0.49 7.48 36.01 0.27 0.76 16 5 O -0.50 -1.56 15.65 -18.75 -0.29 -1.86 16 6 C -0.11 0.11 4.24 -90.96 -0.39 -0.27 16 7 H 0.14 -0.34 8.14 -51.93 -0.42 -0.76 16 8 C -0.15 0.14 6.91 -25.92 -0.18 -0.03 16 9 C 0.11 -0.01 1.57 -89.83 -0.14 -0.16 16 10 F -0.17 -0.35 16.51 2.25 0.04 -0.31 16 11 C -0.69 0.44 3.21 37.16 0.12 0.56 16 12 S 2.59 6.75 4.91 -107.50 -0.53 6.22 16 13 O -0.93 -4.49 15.39 -67.03 -1.03 -5.52 16 14 O -0.91 -4.25 17.97 -67.04 -1.20 -5.45 16 15 O -0.65 -1.37 9.06 -52.03 -0.47 -1.84 16 16 C 0.03 0.07 4.89 -39.24 -0.19 -0.12 16 17 C -0.09 -0.09 4.18 -104.50 -0.44 -0.53 16 18 C -0.09 0.06 2.10 36.00 0.08 0.14 16 19 O -0.52 0.30 12.63 -35.23 -0.44 -0.15 16 20 Si 0.74 -1.17 29.26 -169.99 -4.97 -6.14 16 21 C -0.18 -0.17 7.68 -39.45 -0.30 -0.48 16 22 C 0.15 0.22 6.66 -39.24 -0.26 -0.04 16 23 O -0.30 -0.22 9.54 -19.70 -0.19 -0.41 16 24 C 0.02 -0.04 9.81 101.05 0.99 0.95 16 25 C -0.09 -0.14 5.89 -104.49 -0.62 -0.75 16 26 C -0.11 0.03 9.79 36.01 0.35 0.38 16 27 C -0.05 -0.10 8.25 -39.45 -0.33 -0.42 16 28 C -0.12 0.18 6.86 -25.94 -0.18 0.00 16 29 H 0.08 -0.26 8.14 -51.93 -0.42 -0.69 16 30 H 0.07 -0.12 8.14 -51.93 -0.42 -0.55 16 31 H 0.07 -0.12 8.14 -51.93 -0.42 -0.55 16 32 H 0.07 -0.04 8.13 -51.93 -0.42 -0.46 16 33 H 0.07 -0.03 8.13 -51.93 -0.42 -0.45 16 34 H 0.11 -0.15 8.14 -51.93 -0.42 -0.57 16 35 H 0.12 -0.28 7.99 -51.93 -0.42 -0.69 16 36 H 0.17 -0.71 6.74 -51.93 -0.35 -1.06 16 37 H 0.15 -0.19 3.91 -51.92 -0.20 -0.39 16 38 H 0.07 -0.17 4.02 -51.93 -0.21 -0.38 16 39 H 0.37 -1.10 9.12 45.56 0.42 -0.69 16 40 H -0.23 0.30 6.27 56.52 0.35 0.66 16 41 H -0.24 0.01 6.61 56.52 0.37 0.38 16 42 H 0.15 -0.05 4.65 -52.48 -0.24 -0.29 16 43 H 0.06 -0.16 7.66 -51.92 -0.40 -0.55 16 44 H 0.11 -0.44 8.14 -51.93 -0.42 -0.86 16 45 H 0.06 -0.17 7.66 -51.93 -0.40 -0.57 16 46 H 0.08 -0.05 8.14 -51.93 -0.42 -0.47 16 47 H 0.07 -0.11 8.09 -51.93 -0.42 -0.53 16 48 H 0.08 -0.04 7.53 -51.93 -0.39 -0.43 16 49 H 0.15 0.16 7.92 -52.49 -0.42 -0.26 16 50 H 0.12 -0.29 7.39 -51.93 -0.38 -0.68 16 51 H 0.10 -0.22 8.14 -51.93 -0.42 -0.64 16 LS Contribution 424.10 15.07 6.39 6.39 Total: 0.00 -9.83 424.10 -10.62 -20.45 By element: Atomic # 1 Polarization: -4.56 SS G_CDS: -6.91 Total: -11.47 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -0.60 Total: 0.86 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -4.03 Total: -16.00 kcal Atomic # 9 Polarization: -0.35 SS G_CDS: 0.04 Total: -0.31 kcal Atomic # 14 Polarization: -1.17 SS G_CDS: -4.97 Total: -6.14 kcal Atomic # 16 Polarization: 6.75 SS G_CDS: -0.53 Total: 6.22 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -9.83 -10.62 -20.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16525070_16464788.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -215.282 kcal (2) G-P(sol) polarization free energy of solvation -9.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds