Wall clock time and date at job start Mon Mar 8 2021 09:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45204 * 109.47219 * 2 1 4 4 C 1.34231 * 116.99749 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00427 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99568 * 179.97438 * 4 3 2 7 7 H 1.09001 * 112.84969 * 311.19529 * 6 4 3 8 8 C 1.53784 * 113.61229 * 82.50402 * 6 4 3 9 9 C 1.53775 * 87.07963 * 139.97791 * 8 6 4 10 10 F 1.39907 * 113.61176 * 89.11488 * 9 8 6 11 11 C 1.52998 * 113.69022 * 220.00548 * 9 8 6 12 12 S 1.81403 * 109.47075 * 282.53406 * 11 9 8 13 13 O 1.42097 * 110.54792 * 291.62541 * 12 11 9 14 14 O 1.42105 * 110.54269 * 68.37795 * 12 11 9 15 15 O 1.52203 * 104.45114 * 179.97438 * 12 11 9 16 16 C 1.35990 * 113.99466 * 74.12450 * 15 12 11 17 17 C 1.38673 * 120.00355 * 262.75688 * 16 15 12 18 18 C 1.50695 * 119.99904 * 359.97438 * 17 16 15 19 19 O 1.42901 * 109.47410 * 253.42918 * 18 17 16 20 20 Si 1.86305 * 109.47257 * 133.42891 * 18 17 16 21 21 C 1.38146 * 120.00148 * 180.02562 * 17 16 15 22 22 C 1.38678 * 120.00002 * 0.02562 * 21 17 16 23 23 O 1.35986 * 120.00132 * 179.97438 * 22 21 17 24 24 C 1.42899 * 117.00085 * 359.97438 * 23 22 21 25 25 C 1.38720 * 119.99757 * 359.97438 * 22 21 17 26 26 C 1.50704 * 119.99905 * 180.02562 * 25 22 21 27 27 C 1.38111 * 120.00366 * 359.72151 * 25 22 21 28 28 C 1.53777 * 113.61128 * 179.97438 * 6 4 3 29 29 H 1.08997 * 109.46958 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46901 * 300.00134 * 1 2 3 31 31 H 1.09003 * 109.46795 * 60.00377 * 1 2 3 32 32 H 1.09003 * 109.46795 * 119.99623 * 2 1 3 33 33 H 1.08996 * 109.47457 * 239.99427 * 2 1 3 34 34 H 1.09000 * 113.60953 * 254.53030 * 8 6 4 35 35 H 1.08998 * 113.61770 * 25.43038 * 8 6 4 36 36 H 1.08994 * 109.47228 * 42.53623 * 11 9 8 37 37 H 1.09001 * 109.46998 * 162.54217 * 11 9 8 38 38 H 1.09004 * 109.47100 * 13.42893 * 18 17 16 39 39 H 0.96697 * 113.99923 * 66.49277 * 19 18 17 40 40 H 1.48493 * 109.99810 * 300.00147 * 20 18 17 41 41 H 1.48502 * 109.99553 * 61.31910 * 20 18 17 42 42 H 1.08006 * 120.00345 * 180.02562 * 21 17 16 43 43 H 1.09009 * 109.46859 * 59.99833 * 24 23 22 44 44 H 1.08995 * 109.47274 * 179.97438 * 24 23 22 45 45 H 1.09004 * 109.46890 * 300.00188 * 24 23 22 46 46 H 1.08999 * 109.47447 * 89.99262 * 26 25 22 47 47 H 1.08999 * 109.47197 * 210.00031 * 26 25 22 48 48 H 1.09003 * 109.46862 * 329.99558 * 26 25 22 49 49 H 1.07994 * 120.00206 * 180.29481 * 27 25 22 50 50 H 1.09001 * 113.61910 * 334.56475 * 28 6 4 51 51 H 1.09002 * 113.61759 * 105.38691 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 1 3.4716 3.5809 -0.7564 8 6 3.9857 3.5777 1.3967 9 6 5.3560 4.1429 0.9876 10 9 5.2831 5.3935 0.3645 11 6 6.3989 4.0964 2.1061 12 16 6.0858 5.4424 3.2813 13 8 6.3527 6.7018 2.6798 14 8 4.8777 5.2118 3.9931 15 8 7.1753 5.2896 4.3330 16 6 8.4074 5.6844 3.9141 17 6 9.3146 4.7457 3.4462 18 6 8.9352 3.2879 3.4024 19 8 9.6187 2.5863 4.4430 20 14 9.4147 2.5708 1.7511 21 6 10.5664 5.1467 3.0213 22 6 10.9160 6.4881 3.0631 23 8 12.1485 6.8828 2.6453 24 6 13.0321 5.8624 2.1763 25 6 10.0086 7.4271 3.5311 26 6 10.3883 8.8848 3.5760 27 6 8.7549 7.0270 3.9501 28 6 5.4583 2.9680 0.0013 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.8933 -0.5138 0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 3.2285 4.3443 1.5611 35 1 4.0374 2.8516 2.2080 36 1 6.3339 3.1395 2.6239 37 1 7.3952 4.2116 1.6790 38 1 7.8589 3.1882 3.5432 39 1 9.3430 2.8391 5.3346 40 1 8.7105 3.2918 0.6606 41 1 10.8840 2.6719 1.5609 42 1 11.2728 4.4157 2.6565 43 1 12.5817 5.3559 1.3225 44 1 13.9781 6.3117 1.8741 45 1 13.2104 5.1413 2.9740 46 1 10.1167 9.3603 2.6336 47 1 9.8599 9.3729 4.3949 48 1 11.4633 8.9756 3.7321 49 1 8.0468 7.7586 4.3100 50 1 5.9125 2.0753 0.4314 51 1 5.8905 3.2409 -0.9614 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16525070_16464788.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:24:34 Heat of formation + Delta-G solvation = -235.356387 kcal Electronic energy + Delta-G solvation = -41199.603936 eV Core-core repulsion = 35689.617530 eV Total energy + Delta-G solvation = -5509.986406 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 419.132 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -49.25146 -42.78633 -41.84079 -41.00355 -39.40517 -38.69470 -38.62014 -37.61711 -37.53698 -37.48288 -34.35832 -32.86410 -32.21079 -31.17860 -29.49173 -28.63009 -27.32584 -27.01102 -25.73637 -24.37997 -23.96265 -23.18393 -22.35691 -21.42379 -20.90995 -19.77532 -19.39193 -19.20424 -19.03560 -18.75011 -18.48126 -17.86646 -17.63232 -17.46723 -17.21847 -17.03143 -16.64012 -16.35160 -16.28524 -16.07654 -15.96990 -15.72360 -15.41614 -15.10653 -14.76921 -14.66479 -14.63191 -14.54688 -14.41784 -14.23520 -14.07144 -13.98291 -13.71845 -13.66456 -13.60306 -13.50004 -13.21368 -13.12849 -13.10138 -13.02276 -12.93830 -12.90120 -12.63451 -12.53654 -12.48720 -12.23499 -12.08768 -11.91218 -11.54375 -11.50048 -11.48370 -11.40890 -11.36641 -10.31613 -9.53048 -5.02399 -1.43752 -0.36526 -0.20795 0.70176 1.01110 1.06060 1.45239 1.56745 1.76849 1.98826 2.01617 2.16216 2.50014 2.57453 2.68851 2.86081 3.00535 3.08590 3.15593 3.29176 3.41735 3.53840 3.57534 3.65883 3.71023 3.77213 3.94165 4.00409 4.05572 4.06291 4.13384 4.19651 4.20429 4.24257 4.32189 4.35069 4.36815 4.42530 4.44979 4.59691 4.61215 4.64553 4.69631 4.72539 4.73944 4.83340 4.91250 5.00346 5.00660 5.09485 5.14398 5.31161 5.42599 5.99350 6.46282 6.62164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.361 6.361 4 C 0.477 3.523 5 O -0.524 6.524 6 C -0.106 4.106 7 H 0.150 0.850 8 C -0.152 4.152 9 C 0.095 3.905 10 F -0.185 7.185 11 C -0.684 4.684 12 S 2.586 3.414 13 O -0.960 6.960 14 O -0.939 6.939 15 O -0.651 6.651 16 C 0.015 3.985 17 C -0.085 4.085 18 C -0.106 4.106 19 O -0.531 6.531 20 Si 0.778 3.222 21 C -0.189 4.189 22 C 0.149 3.851 23 O -0.312 6.312 24 C 0.010 3.990 25 C -0.103 4.103 26 C -0.110 4.110 27 C -0.063 4.063 28 C -0.119 4.119 29 H 0.096 0.904 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.133 0.867 36 H 0.204 0.796 37 H 0.157 0.843 38 H 0.086 0.914 39 H 0.384 0.616 40 H -0.234 1.234 41 H -0.266 1.266 42 H 0.160 0.840 43 H 0.064 0.936 44 H 0.129 0.871 45 H 0.068 0.932 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.080 0.920 49 H 0.155 0.845 50 H 0.137 0.863 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.407 -4.296 -1.978 5.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.278 6.278 4 C 0.321 3.679 5 O -0.413 6.413 6 C -0.125 4.125 7 H 0.168 0.832 8 C -0.189 4.189 9 C 0.075 3.925 10 F -0.165 7.165 11 C -0.810 4.810 12 S 2.683 3.317 13 O -0.959 6.959 14 O -0.938 6.938 15 O -0.610 6.610 16 C -0.027 4.027 17 C -0.088 4.088 18 C -0.213 4.213 19 O -0.338 6.338 20 Si 0.675 3.325 21 C -0.207 4.207 22 C 0.101 3.899 23 O -0.224 6.224 24 C -0.084 4.084 25 C -0.104 4.104 26 C -0.166 4.166 27 C -0.083 4.083 28 C -0.157 4.157 29 H 0.115 0.885 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.129 0.871 35 H 0.151 0.849 36 H 0.221 0.779 37 H 0.174 0.826 38 H 0.104 0.896 39 H 0.233 0.767 40 H -0.158 1.158 41 H -0.192 1.192 42 H 0.177 0.823 43 H 0.082 0.918 44 H 0.147 0.853 45 H 0.086 0.914 46 H 0.100 0.900 47 H 0.102 0.898 48 H 0.099 0.901 49 H 0.173 0.827 50 H 0.155 0.845 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.955 -4.015 -2.731 5.685 hybrid contribution -0.168 0.649 0.859 1.090 sum 2.787 -3.366 -1.872 4.755 Atomic orbital electron populations 1.21841 0.91086 1.04242 1.03622 1.23289 0.96687 0.79096 1.02872 1.86531 1.24171 1.33777 1.83310 1.23521 0.80710 0.92199 0.71483 1.90672 1.60886 1.43537 1.46194 1.22534 0.97478 0.91167 1.01280 0.83238 1.23951 0.95405 1.02287 0.97261 1.21353 0.95756 0.82111 0.93295 1.92985 1.97076 1.42692 1.83755 1.31748 1.10289 1.24416 1.14567 1.05738 0.74383 0.76645 0.74937 1.93641 1.83418 1.40084 1.78722 1.93639 1.43379 1.86793 1.69950 1.85729 1.28629 1.86400 1.60260 1.17834 0.82569 0.93429 1.08846 1.20383 0.93669 0.96949 0.97832 1.26065 1.01054 0.88726 1.05492 1.86704 1.65919 1.63362 1.17810 0.92892 0.80421 0.89215 0.69938 1.21258 0.97600 0.95603 1.06261 1.19088 0.85819 0.92036 0.92933 1.86141 1.21623 1.37619 1.77065 1.23519 0.93621 0.91683 0.99598 1.19462 0.91678 0.97803 1.01467 1.20767 1.03267 0.88747 1.03844 1.21332 0.96315 0.94257 0.96355 1.23688 0.93613 0.97378 1.01006 0.88505 0.91384 0.91446 0.90852 0.91057 0.87121 0.84918 0.77890 0.82556 0.89575 0.76677 1.15830 1.19155 0.82257 0.91773 0.85329 0.91359 0.89973 0.89754 0.90075 0.82704 0.84484 0.87054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.65 10.29 71.98 0.74 1.39 16 2 C 0.05 -0.04 6.19 71.98 0.45 0.40 16 3 O -0.36 -0.69 10.22 -51.42 -0.53 -1.22 16 4 C 0.48 0.72 7.48 71.24 0.53 1.25 16 5 O -0.52 -2.94 15.65 21.97 0.34 -2.59 16 6 C -0.11 0.30 4.24 -11.01 -0.05 0.26 16 7 H 0.15 -0.82 8.14 -2.39 -0.02 -0.84 16 8 C -0.15 0.38 6.91 31.12 0.21 0.60 16 9 C 0.09 -0.09 1.57 -10.28 -0.02 -0.10 16 10 F -0.18 -0.83 16.51 44.97 0.74 -0.08 16 11 C -0.68 1.41 3.21 71.98 0.23 1.64 16 12 S 2.59 15.45 4.91 -56.49 -0.28 15.17 16 13 O -0.96 -10.87 15.39 -118.57 -1.82 -12.69 16 14 O -0.94 -9.74 17.97 -118.57 -2.13 -11.87 16 15 O -0.65 -3.24 9.06 -62.53 -0.57 -3.81 16 16 C 0.02 0.08 4.89 22.49 0.11 0.19 16 17 C -0.09 -0.18 4.18 -19.78 -0.08 -0.27 16 18 C -0.11 0.24 2.10 71.23 0.15 0.39 16 19 O -0.53 1.06 12.63 -148.98 -1.88 -0.82 16 20 Si 0.78 -3.42 29.26 68.60 2.01 -1.41 16 21 C -0.19 -0.38 7.68 22.35 0.17 -0.21 16 22 C 0.15 0.51 6.66 22.49 0.15 0.66 16 23 O -0.31 -0.52 9.54 -93.39 -0.89 -1.41 16 24 C 0.01 -0.05 9.81 113.37 1.11 1.07 16 25 C -0.10 -0.42 5.89 -19.78 -0.12 -0.54 16 26 C -0.11 -0.04 9.79 71.24 0.70 0.66 16 27 C -0.06 -0.35 8.25 22.36 0.18 -0.17 16 28 C -0.12 0.50 6.86 31.11 0.21 0.72 16 29 H 0.10 -0.70 8.14 -2.39 -0.02 -0.72 16 30 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 31 H 0.07 -0.26 8.14 -2.39 -0.02 -0.28 16 32 H 0.07 -0.09 8.13 -2.39 -0.02 -0.11 16 33 H 0.07 -0.06 8.13 -2.39 -0.02 -0.08 16 34 H 0.11 -0.28 8.14 -2.39 -0.02 -0.30 16 35 H 0.13 -0.75 7.99 -2.39 -0.02 -0.77 16 36 H 0.20 -2.15 6.74 -2.39 -0.02 -2.17 16 37 H 0.16 -0.56 3.91 -2.39 -0.01 -0.56 16 38 H 0.09 -0.54 4.02 -2.38 -0.01 -0.55 16 39 H 0.38 -2.47 9.12 -74.06 -0.68 -3.15 16 40 H -0.23 1.00 6.27 99.48 0.62 1.63 16 41 H -0.27 0.17 6.61 99.48 0.66 0.83 16 42 H 0.16 -0.14 4.65 -2.91 -0.01 -0.15 16 43 H 0.06 -0.37 7.66 -2.38 -0.02 -0.39 16 44 H 0.13 -1.12 8.14 -2.39 -0.02 -1.14 16 45 H 0.07 -0.40 7.66 -2.38 -0.02 -0.42 16 46 H 0.08 -0.02 8.14 -2.39 -0.02 -0.03 16 47 H 0.08 -0.16 8.09 -2.39 -0.02 -0.18 16 48 H 0.08 -0.02 7.53 -2.39 -0.02 -0.04 16 49 H 0.16 0.66 7.92 -2.91 -0.02 0.63 16 50 H 0.14 -0.93 7.39 -2.39 -0.02 -0.95 16 51 H 0.11 -0.65 8.14 -2.39 -0.02 -0.67 16 Total: 0.00 -23.41 424.10 -0.08 -23.50 By element: Atomic # 1 Polarization: -10.91 SS G_CDS: 0.23 Total: -10.68 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: 4.69 Total: 7.92 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -7.48 Total: -34.41 kcal Atomic # 9 Polarization: -0.83 SS G_CDS: 0.74 Total: -0.08 kcal Atomic # 14 Polarization: -3.42 SS G_CDS: 2.01 Total: -1.41 kcal Atomic # 16 Polarization: 15.45 SS G_CDS: -0.28 Total: 15.17 kcal Total: -23.41 -0.08 -23.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16525070_16464788.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -211.861 kcal (2) G-P(sol) polarization free energy of solvation -23.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds