Wall clock time and date at job start Mon Mar 8 2021 10:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35983 * 117.00085 * 2 1 4 4 C 1.38676 * 119.99956 * 180.02562 * 3 2 1 5 5 C 1.50698 * 119.99811 * 0.02562 * 4 3 2 6 6 C 1.38146 * 119.99910 * 179.72419 * 4 3 2 7 7 C 1.38682 * 120.00245 * 0.25703 * 6 4 3 8 8 O 1.35987 * 119.99877 * 180.02562 * 7 6 4 9 9 S 1.52208 * 113.99749 * 275.63868 * 8 7 6 10 10 O 1.42096 * 104.27392 * 192.05761 * 9 8 7 11 11 O 1.42099 * 104.27909 * 319.91880 * 9 8 7 12 12 C 1.81401 * 104.44544 * 75.98990 * 9 8 7 13 13 C 1.53005 * 109.46925 * 183.57519 * 12 9 8 14 14 H 1.08996 * 112.84890 * 316.41245 * 13 12 9 15 15 C 1.53784 * 113.61019 * 87.60883 * 13 12 9 16 16 C 1.54056 * 86.98239 * 89.16213 * 15 13 12 17 17 O 1.42891 * 113.68839 * 270.86749 * 16 15 13 18 18 C 1.42904 * 114.00278 * 162.68712 * 17 16 15 19 19 C 1.53003 * 113.61515 * 139.97895 * 16 15 13 20 20 F 1.39903 * 109.47194 * 327.51280 * 19 16 15 21 21 F 1.39895 * 109.47191 * 87.51693 * 19 16 15 22 22 F 1.39894 * 109.46638 * 207.51778 * 19 16 15 23 23 C 1.53775 * 87.07894 * 25.43137 * 16 15 13 24 24 C 1.38712 * 119.99776 * 359.97438 * 7 6 4 25 25 C 1.50696 * 119.99999 * 179.97438 * 24 7 6 26 26 O 1.42896 * 109.47044 * 74.90791 * 25 24 7 27 27 Si 1.86302 * 109.47238 * 194.90806 * 25 24 7 28 28 C 1.38115 * 120.00055 * 359.97438 * 24 7 6 29 29 H 1.08990 * 109.47326 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47098 * 300.00221 * 1 2 3 31 31 H 1.09002 * 109.47211 * 59.99646 * 1 2 3 32 32 H 1.08998 * 109.47266 * 269.72135 * 5 4 3 33 33 H 1.09000 * 109.47405 * 29.72579 * 5 4 3 34 34 H 1.09007 * 109.46938 * 149.72568 * 5 4 3 35 35 H 1.08002 * 120.00131 * 180.23133 * 6 4 3 36 36 H 1.08999 * 109.47395 * 303.57682 * 12 9 8 37 37 H 1.09000 * 109.47203 * 63.57719 * 12 9 8 38 38 H 1.09003 * 113.60934 * 203.66678 * 15 13 12 39 39 H 1.08999 * 113.61325 * 334.56427 * 15 13 12 40 40 H 1.08996 * 109.46751 * 305.42977 * 18 17 16 41 41 H 1.08995 * 109.46727 * 65.42235 * 18 17 16 42 42 H 1.08995 * 109.47486 * 185.42944 * 18 17 16 43 43 H 1.09000 * 113.61336 * 220.02571 * 23 16 15 44 44 H 1.08993 * 113.69489 * 89.12806 * 23 16 15 45 45 H 1.08998 * 109.47413 * 314.90596 * 25 24 7 46 46 H 0.96699 * 114.00121 * 65.17334 * 26 25 24 47 47 H 1.48503 * 109.99953 * 180.02562 * 27 25 24 48 48 H 1.48502 * 109.99696 * 301.31691 * 27 25 24 49 49 H 1.08002 * 119.99683 * 180.02562 * 28 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2116 0.0000 4 6 3.4313 1.2842 -0.0005 5 6 4.2519 0.0203 -0.0017 6 6 4.0584 2.5150 -0.0063 7 6 3.3032 3.6782 -0.0062 8 8 3.9206 4.8897 -0.0123 9 16 4.3297 5.3831 1.3682 10 8 4.6771 6.7458 1.1645 11 8 3.2405 5.0221 2.2064 12 6 5.8013 4.4058 1.7804 13 6 6.2614 4.7501 3.1984 14 1 6.2444 5.8210 3.4006 15 6 5.5803 3.9063 4.2889 16 6 6.7261 2.8929 4.1059 17 8 6.4644 1.9047 3.1074 18 6 7.6305 1.2152 2.6524 19 6 7.2278 2.2911 5.4201 20 9 7.1103 3.2393 6.4421 21 9 6.4627 1.1642 5.7392 22 9 8.5694 1.9198 5.2807 23 6 7.5796 4.0681 3.6009 24 6 1.9180 3.6056 -0.0008 25 6 1.0972 4.8695 0.0000 26 8 1.1271 5.4575 -1.3020 27 14 -0.6628 4.4668 0.4593 28 6 1.2909 2.3750 0.0039 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 4.4544 -0.2824 1.0256 33 1 3.7012 -0.7702 -0.5115 34 1 5.1940 0.1992 -0.5201 35 1 5.1370 2.5716 -0.0105 36 1 5.5599 3.3443 1.7244 37 1 6.5991 4.6347 1.0739 38 1 5.5720 4.3838 5.2687 39 1 4.6036 3.5210 3.9964 40 1 8.3699 1.9390 2.3097 41 1 8.0482 0.6287 3.4706 42 1 7.3627 0.5522 1.8297 43 1 8.2158 3.8131 2.7534 44 1 8.1176 4.5904 4.3920 45 1 1.5105 5.5707 0.7249 46 1 0.7023 4.9214 -1.9856 47 1 -1.4827 5.7049 0.4630 48 1 -1.2274 3.4871 -0.5034 49 1 0.2124 2.3186 0.0077 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16525070_17541816.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:12:58 Heat of formation + Delta-G solvation = -293.783625 kcal Electronic energy + Delta-G solvation = -44066.495352 eV Core-core repulsion = 38061.975732 eV Total energy + Delta-G solvation = -6004.519620 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 427.113 amu Computer time = 9.42 seconds Orbital eigenvalues (eV) -51.22267 -48.76124 -48.68954 -42.53713 -41.42626 -40.79412 -38.65402 -38.39963 -37.65518 -37.36485 -37.20813 -34.24559 -31.88886 -30.95067 -29.37401 -28.45805 -28.32552 -27.80927 -26.76597 -25.62839 -24.30308 -23.50990 -23.02436 -21.47682 -20.61748 -19.94720 -19.56927 -19.46855 -19.28978 -19.26217 -18.76758 -18.61684 -17.62084 -17.48705 -17.17917 -16.83415 -16.62709 -16.43479 -16.23472 -16.13078 -15.82385 -15.63863 -15.56498 -15.47580 -15.24520 -15.11243 -15.09883 -14.92309 -14.84566 -14.76879 -14.58060 -14.39749 -14.25862 -14.11895 -14.02674 -13.84355 -13.45517 -13.31027 -13.22868 -13.14258 -12.98112 -12.94773 -12.92479 -12.77971 -12.70981 -12.32436 -12.18210 -12.14043 -11.97685 -11.89856 -11.87396 -11.39751 -10.80659 -10.78368 -10.15354 -9.29586 -5.03796 -1.13990 -0.12195 -0.03973 0.98160 1.10604 1.39281 1.55477 1.80707 2.10594 2.18370 2.19840 2.43649 2.57398 2.63461 2.82558 2.86516 3.15788 3.19501 3.22316 3.29087 3.33646 3.49915 3.52926 3.64321 3.77602 3.91195 4.02499 4.22484 4.25616 4.27864 4.31732 4.36574 4.39770 4.40197 4.45632 4.49288 4.53426 4.56983 4.61752 4.69854 4.76519 4.79581 4.82028 4.87522 4.89105 4.90357 4.96032 5.18750 5.26657 5.49421 5.74813 6.18801 6.37627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.312 6.312 3 C 0.149 3.851 4 C -0.090 4.090 5 C -0.108 4.108 6 C -0.094 4.094 7 C 0.032 3.968 8 O -0.662 6.662 9 S 2.579 3.421 10 O -0.972 6.972 11 O -0.961 6.961 12 C -0.625 4.625 13 C -0.098 4.098 14 H 0.116 0.884 15 C -0.133 4.133 16 C 0.041 3.959 17 O -0.338 6.338 18 C -0.001 4.001 19 C 0.433 3.567 20 F -0.178 7.178 21 F -0.186 7.186 22 F -0.184 7.184 23 C -0.130 4.130 24 C -0.064 4.064 25 C -0.117 4.117 26 O -0.541 6.541 27 Si 0.771 3.229 28 C -0.194 4.194 29 H 0.124 0.876 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.176 0.824 36 H 0.166 0.834 37 H 0.176 0.824 38 H 0.132 0.868 39 H 0.103 0.897 40 H 0.071 0.929 41 H 0.042 0.958 42 H 0.122 0.878 43 H 0.116 0.884 44 H 0.123 0.877 45 H 0.100 0.900 46 H 0.388 0.612 47 H -0.290 1.290 48 H -0.239 1.239 49 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.055 -7.622 -0.804 7.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.224 6.224 3 C 0.101 3.899 4 C -0.091 4.091 5 C -0.165 4.165 6 C -0.114 4.114 7 C -0.009 4.009 8 O -0.622 6.622 9 S 2.679 3.321 10 O -0.970 6.970 11 O -0.960 6.960 12 C -0.754 4.754 13 C -0.118 4.118 14 H 0.134 0.866 15 C -0.170 4.170 16 C -0.001 4.001 17 O -0.256 6.256 18 C -0.096 4.096 19 C 0.378 3.622 20 F -0.159 7.159 21 F -0.167 7.167 22 F -0.165 7.165 23 C -0.168 4.168 24 C -0.067 4.067 25 C -0.224 4.224 26 O -0.349 6.349 27 Si 0.671 3.329 28 C -0.212 4.212 29 H 0.142 0.858 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.194 0.806 36 H 0.184 0.816 37 H 0.194 0.806 38 H 0.150 0.850 39 H 0.122 0.878 40 H 0.090 0.910 41 H 0.061 0.939 42 H 0.141 0.859 43 H 0.135 0.865 44 H 0.141 0.859 45 H 0.118 0.882 46 H 0.237 0.763 47 H -0.217 1.217 48 H -0.164 1.164 49 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.048 -6.777 -0.937 6.841 hybrid contribution 1.003 0.216 -0.656 1.218 sum 0.956 -6.561 -1.593 6.819 Atomic orbital electron populations 1.23554 0.76145 1.06392 1.02806 1.86137 1.23514 1.25335 1.87450 1.19017 0.92213 0.84642 0.94008 1.19384 0.90876 0.96256 1.02620 1.20764 0.99291 0.92467 1.03929 1.21380 1.01949 0.89063 0.99002 1.17917 0.90990 0.79876 1.12148 1.85724 1.77255 1.41602 1.57586 1.05860 0.77794 0.75418 0.73031 1.93603 1.85913 1.33767 1.83728 1.93596 1.50172 1.83966 1.68240 1.30754 1.20667 1.17553 1.06455 1.21793 0.98106 1.01824 0.90053 0.86560 1.23640 0.98039 0.93298 1.01991 1.24065 1.01898 0.89329 0.84845 1.88037 1.33008 1.51268 1.53277 1.23376 0.88176 0.97247 1.00843 1.21497 0.75514 0.76584 0.88604 1.93173 1.95681 1.64410 1.62684 1.93192 1.75621 1.53857 1.94073 1.93185 1.35555 1.91864 1.95903 1.23654 0.96054 0.92927 1.04153 1.20138 0.92727 0.95992 0.97878 1.25571 1.13626 0.94973 0.88215 1.86655 1.81429 1.49068 1.17734 0.93659 0.69817 0.80354 0.89037 1.21265 1.01724 0.90288 1.07972 0.85790 0.90570 0.91788 0.89583 0.90758 0.89259 0.80637 0.81614 0.80625 0.85013 0.87798 0.91042 0.93942 0.85944 0.86535 0.85858 0.88183 0.76274 1.21722 1.16358 0.81916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.04 9.81 113.37 1.11 1.07 16 2 O -0.31 0.63 9.53 -93.36 -0.89 -0.26 16 3 C 0.15 -0.06 6.66 22.49 0.15 0.08 16 4 C -0.09 0.17 5.89 -19.78 -0.12 0.05 16 5 C -0.11 0.69 9.79 71.24 0.70 1.39 16 6 C -0.09 0.15 8.11 22.35 0.18 0.33 16 7 C 0.03 0.15 4.67 22.49 0.11 0.25 16 8 O -0.66 -4.78 9.40 -62.49 -0.59 -5.37 16 9 S 2.58 14.79 4.98 -56.49 -0.28 14.51 16 10 O -0.97 -13.45 18.09 -118.57 -2.15 -15.60 16 11 O -0.96 -7.88 15.00 -118.57 -1.78 -9.66 16 12 C -0.62 2.92 5.05 71.98 0.36 3.28 16 13 C -0.10 0.48 3.84 -10.26 -0.04 0.44 16 14 H 0.12 -0.73 8.13 -2.39 -0.02 -0.75 16 15 C -0.13 0.42 6.91 31.22 0.22 0.63 16 16 C 0.04 -0.14 0.85 -10.17 -0.01 -0.14 16 17 O -0.34 1.40 8.37 -148.98 -1.25 0.15 16 18 C 0.00 0.01 10.29 113.37 1.17 1.18 16 19 C 0.43 0.26 2.52 71.98 0.18 0.44 16 20 F -0.18 -0.24 15.82 44.97 0.71 0.47 16 21 F -0.19 -0.81 17.10 44.97 0.77 -0.04 16 22 F -0.18 -0.15 15.43 44.97 0.69 0.54 16 23 C -0.13 0.95 6.50 31.12 0.20 1.16 16 24 C -0.06 -0.29 4.82 -19.78 -0.10 -0.39 16 25 C -0.12 -0.77 2.32 71.23 0.17 -0.60 16 26 O -0.54 -4.42 12.93 -148.98 -1.93 -6.35 16 27 Si 0.77 0.22 30.16 68.60 2.07 2.28 16 28 C -0.19 0.01 7.65 22.36 0.17 0.18 16 29 H 0.12 -1.39 8.14 -2.39 -0.02 -1.41 16 30 H 0.08 -0.77 7.65 -2.38 -0.02 -0.79 16 31 H 0.06 -0.57 7.67 -2.39 -0.02 -0.59 16 32 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 33 H 0.07 -0.38 7.52 -2.39 -0.02 -0.40 16 34 H 0.09 -0.90 8.09 -2.38 -0.02 -0.92 16 35 H 0.18 -1.51 6.78 -2.91 -0.02 -1.53 16 36 H 0.17 -1.15 3.87 -2.39 -0.01 -1.16 16 37 H 0.18 -1.87 8.14 -2.39 -0.02 -1.89 16 38 H 0.13 -0.67 7.02 -2.39 -0.02 -0.68 16 39 H 0.10 -0.18 8.04 -2.39 -0.02 -0.20 16 40 H 0.07 -0.79 6.53 -2.39 -0.02 -0.80 16 41 H 0.04 -0.22 6.74 -2.39 -0.02 -0.23 16 42 H 0.12 -1.49 8.14 -2.39 -0.02 -1.51 16 43 H 0.12 -1.28 6.62 -2.39 -0.02 -1.29 16 44 H 0.12 -1.11 8.06 -2.39 -0.02 -1.13 16 45 H 0.10 1.02 6.17 -2.39 -0.01 1.00 16 46 H 0.39 -0.11 8.61 -74.06 -0.64 -0.75 16 47 H -0.29 -2.08 7.11 99.48 0.71 -1.38 16 48 H -0.24 0.54 6.69 99.48 0.67 1.21 16 49 H 0.16 -0.73 3.09 -2.91 -0.01 -0.74 16 Total: 0.00 -26.79 409.43 0.25 -26.54 By element: Atomic # 1 Polarization: -16.99 SS G_CDS: 0.41 Total: -16.58 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 4.45 Total: 9.36 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -8.57 Total: -37.08 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 2.17 Total: 0.96 kcal Atomic # 14 Polarization: 0.22 SS G_CDS: 2.07 Total: 2.28 kcal Atomic # 16 Polarization: 14.79 SS G_CDS: -0.28 Total: 14.51 kcal Total: -26.79 0.25 -26.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16525070_17541816.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -267.242 kcal (2) G-P(sol) polarization free energy of solvation -26.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -294.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -293.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.42 seconds