Wall clock time and date at job start Mon Mar 8 2021 09:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35980 * 116.99634 * 2 1 4 4 C 1.38676 * 120.00332 * 0.26970 * 3 2 1 5 5 C 1.38151 * 119.99942 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.99848 * 180.02562 * 5 4 3 7 7 O 1.42898 * 109.47332 * 255.00535 * 6 5 4 8 8 Si 1.86302 * 109.47143 * 15.00279 * 6 5 4 9 9 H 1.48500 * 109.46875 * 60.00333 * 8 6 5 10 10 H 1.48500 * 109.46899 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47175 * 300.00115 * 8 6 5 12 12 C 1.38680 * 120.00170 * 0.02562 * 5 4 3 13 13 O 1.35984 * 119.99689 * 179.97438 * 12 5 4 14 14 S 1.52201 * 113.99526 * 90.00609 * 13 12 5 15 15 O 1.42103 * 106.39816 * 188.53627 * 14 13 12 16 16 O 1.42102 * 106.40338 * 321.45309 * 14 13 12 17 17 C 1.76204 * 107.22125 * 74.99608 * 14 13 12 18 18 C 1.38214 * 119.99660 * 270.27313 * 17 14 13 19 19 C 1.38252 * 119.99508 * 179.97438 * 18 17 14 20 20 C 1.38213 * 120.00120 * 359.97438 * 19 18 17 21 21 C 1.38254 * 120.00400 * 359.97341 * 20 19 18 22 Xx 1.80992 * 120.00137 * 179.97438 * 21 20 19 23 22 F 9.54898 * 128.14994 * 346.20020 * 5 1 2 24 23 F 1.61000 * 90.00142 * 315.00317 * 22 21 20 25 24 F 1.61000 * 89.99858 * 135.00317 * 22 21 20 26 25 F 1.61000 * 90.00050 * 45.00264 * 22 21 20 27 26 F 1.60997 * 90.00281 * 225.00347 * 22 21 20 28 27 C 1.38214 * 119.99788 * 359.82046 * 21 20 19 29 28 C 1.38715 * 119.99789 * 359.97438 * 12 5 4 30 29 C 1.38111 * 120.00093 * 359.76766 * 29 12 5 31 30 C 1.50696 * 119.99935 * 180.02562 * 30 29 12 32 31 H 1.09001 * 109.47103 * 60.00556 * 1 2 3 33 32 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 34 33 H 1.09000 * 109.47187 * 300.00116 * 1 2 3 35 34 H 1.07999 * 119.99740 * 359.97438 * 4 3 2 36 35 H 1.09000 * 109.47191 * 135.00138 * 6 5 4 37 36 H 0.96704 * 114.00070 * 300.00042 * 7 6 5 38 37 H 1.08002 * 120.00118 * 359.97159 * 18 17 14 39 38 H 1.07998 * 119.99844 * 179.97438 * 19 18 17 40 39 H 1.08007 * 119.99898 * 179.97438 * 20 19 18 41 40 H 1.07998 * 120.00152 * 179.97438 * 28 21 20 42 41 H 1.07999 * 119.99752 * 179.97438 * 29 12 5 43 42 H 1.08999 * 109.47643 * 89.99534 * 31 30 29 44 43 H 1.09001 * 109.47256 * 209.99933 * 31 30 29 45 44 H 1.08998 * 109.47348 * 329.99649 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2910 2.3746 0.0057 5 6 1.9182 3.6056 0.0062 6 6 1.0975 4.8694 0.0129 7 8 1.1248 5.4622 -1.2870 8 14 -0.6617 4.4650 0.4740 9 1 -0.6902 3.8491 1.8249 10 1 -1.4703 5.7105 0.4812 11 1 -1.2266 3.5132 -0.5160 12 6 3.3031 3.6782 0.0005 13 8 3.9204 4.8899 0.0005 14 16 4.2073 5.4383 1.3910 15 8 4.6593 6.7734 1.2102 16 8 3.0858 5.0997 2.1952 17 6 5.5742 4.5333 2.0369 18 6 5.3570 3.3738 2.7571 19 6 6.4295 2.6635 3.2635 20 6 7.7190 3.1126 3.0491 21 6 7.9363 4.2718 2.3278 22 9 11.1268 5.3848 1.8004 23 9 9.9791 4.5794 3.5929 24 9 9.2706 5.1410 0.5024 25 9 10.0838 3.3638 1.6705 26 9 9.1661 6.3566 2.4248 27 6 6.8643 4.9797 1.8179 28 6 4.0586 2.5148 -0.0051 29 6 3.4316 1.2843 -0.0003 30 6 4.2524 0.0204 -0.0058 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 0.2125 2.3181 0.0096 35 1 1.5121 5.5681 0.7396 36 1 2.0112 5.6992 -1.5927 37 1 4.3494 3.0228 2.9243 38 1 6.2598 1.7577 3.8265 39 1 8.5568 2.5578 3.4450 40 1 7.0340 5.8855 1.2548 41 1 5.1371 2.5714 -0.0099 42 1 4.4578 -0.2840 1.0204 43 1 3.7002 -0.7692 -0.5155 44 1 5.1929 0.2003 -0.5265 RHF calculation, no. of doubly occupied orbitals= 76 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16525070_9043274.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:32:23 Heat of formation + Delta-G solvation = 263.492238 kcal Electronic energy + Delta-G solvation = -42857.604334 eV Core-core repulsion = 36426.217608 eV Total energy + Delta-G solvation = -6431.386726 eV No. of doubly occupied orbitals = 76 Molecular weight (most abundant/longest-lived isotopes) = 432.072 amu Computer time = 45.01 seconds Orbital eigenvalues (eV) -44.48478 -44.33495 -44.28470 -44.18550 -43.67187 -42.75976 -41.30825 -40.92040 -38.91412 -38.53102 -37.67329 -37.45250 -34.25078 -33.48824 -32.79267 -31.10295 -29.34229 -28.47344 -25.72378 -25.40685 -24.34060 -24.12086 -23.23736 -21.54569 -20.11686 -19.44656 -19.22743 -18.85693 -18.63603 -18.05250 -17.65354 -17.50289 -16.85142 -16.45791 -16.28974 -15.88667 -15.81330 -15.63922 -15.52957 -15.40534 -15.32556 -15.13222 -14.86609 -14.74003 -14.57883 -14.47756 -14.37385 -14.32601 -14.25633 -14.19276 -14.16979 -14.06513 -14.00277 -13.94114 -13.80149 -13.78377 -13.70696 -13.64681 -13.52169 -13.16942 -12.94082 -12.76426 -12.63852 -12.52642 -12.40739 -12.25274 -12.04876 -12.01786 -11.92168 -11.56733 -11.48700 -11.40282 -11.25849 -11.11827 -10.17926 -9.37881 -5.35725 -4.89197 -3.43230 -1.51453 -1.25323 -0.98355 -0.16383 -0.12691 0.83774 1.04491 1.39516 1.42797 1.46549 1.88746 2.02555 2.11517 2.16481 2.32113 2.49483 2.84633 3.05652 3.14764 3.20772 3.32157 3.39346 3.56031 3.66655 3.76776 3.85042 3.91178 4.00318 4.16398 4.24793 4.31772 4.33474 4.37326 4.38358 4.45424 4.58605 4.75403 4.78265 4.79684 4.88273 4.94496 5.14682 5.26943 5.49885 6.13735 6.42416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.307 6.307 3 C 0.162 3.838 4 C -0.201 4.201 5 C -0.053 4.053 6 C -0.128 4.128 7 O -0.543 6.543 8 Si 1.016 2.984 9 H -0.219 1.219 10 H -0.269 1.269 11 H -0.240 1.240 12 C 0.009 3.991 13 O -0.643 6.643 14 S 2.676 3.324 15 O -0.947 6.947 16 O -0.931 6.931 17 C -0.651 4.651 18 C 0.008 3.992 19 C -0.032 4.032 20 C -0.044 4.044 21 C 0.312 3.688 22 F -0.203 7.203 23 F -0.156 7.156 24 F -0.167 7.167 25 F -0.146 7.146 26 F -0.172 7.172 27 C -0.024 4.024 28 C -0.076 4.076 29 C -0.088 4.088 30 C -0.113 4.113 31 H 0.063 0.937 32 H 0.126 0.874 33 H 0.073 0.927 34 H 0.154 0.846 35 H 0.081 0.919 36 H 0.379 0.621 37 H 0.217 0.783 38 H 0.252 0.748 39 H 0.209 0.791 40 H 0.179 0.821 41 H 0.176 0.824 42 H 0.102 0.898 43 H 0.070 0.930 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.795 -14.265 3.866 18.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.220 6.220 3 C 0.114 3.886 4 C -0.219 4.219 5 C -0.056 4.056 6 C -0.234 4.234 7 O -0.350 6.350 8 Si 0.833 3.167 9 H -0.141 1.141 10 H -0.194 1.194 11 H -0.163 1.163 12 C -0.032 4.032 13 O -0.602 6.602 14 S 2.767 3.233 15 O -0.945 6.945 16 O -0.929 6.929 17 C -0.733 4.733 18 C -0.010 4.010 19 C -0.049 4.049 20 C -0.061 4.061 21 C 0.306 3.694 22 F -0.203 7.203 23 F -0.154 7.154 24 F -0.166 7.166 25 F -0.145 7.145 26 F -0.171 7.171 27 C -0.043 4.043 28 C -0.096 4.096 29 C -0.089 4.089 30 C -0.169 4.169 31 H 0.082 0.918 32 H 0.144 0.856 33 H 0.092 0.908 34 H 0.171 0.829 35 H 0.099 0.901 36 H 0.229 0.771 37 H 0.234 0.766 38 H 0.268 0.732 39 H 0.226 0.774 40 H 0.196 0.804 41 H 0.193 0.807 42 H 0.120 0.880 43 H 0.089 0.911 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.608 -14.168 3.944 20.037 hybrid contribution 3.274 1.685 -0.672 3.743 sum -10.335 -12.483 3.271 16.533 Atomic orbital electron populations 1.23563 0.76182 1.06509 1.02700 1.86152 1.23401 1.25360 1.87045 1.19101 0.92369 0.84438 0.92668 1.21248 1.01690 0.90712 1.08285 1.20135 0.92350 0.96397 0.96751 1.25844 1.15331 0.93234 0.88993 1.86719 1.34938 1.81737 1.31602 0.84502 0.70323 0.80746 0.81123 1.14058 1.19350 1.16306 1.17891 0.90219 0.79779 1.15346 1.85808 1.78095 1.41384 1.54950 1.02967 0.73697 0.73734 0.72946 1.93686 1.82389 1.34002 1.84450 1.93671 1.46587 1.83630 1.69038 1.31640 1.08764 1.14687 1.18196 1.22329 1.05109 0.87737 0.85809 1.22483 0.82676 1.02017 0.97726 1.22816 1.01551 0.89803 0.91967 1.27506 0.39568 0.94662 1.07641 2.00000 1.87556 1.52949 1.79799 1.99918 1.96884 1.63434 1.55176 1.99921 1.75557 1.77421 1.63669 1.99918 1.96021 1.26270 1.92276 1.99922 1.72959 1.48446 1.95761 1.21217 0.85708 1.01021 0.96315 1.21307 1.01936 0.88682 0.97651 1.19368 0.90373 0.96307 1.02895 1.20826 0.99023 0.92262 1.04799 0.91821 0.85613 0.90836 0.82881 0.90144 0.77133 0.76642 0.73243 0.77400 0.80432 0.80660 0.87982 0.91106 0.89740 Number of geometries 1 Number of calculations of the screened coulomb radii 6 The total number of SCF iterations 582. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.05 9.81 113.37 1.11 1.06 16 2 O -0.31 2.38 9.53 -93.32 -0.89 1.49 16 3 C 0.16 -1.18 6.66 22.49 0.15 -1.03 16 4 C -0.20 1.07 7.65 22.35 0.17 1.24 16 5 C -0.05 0.15 4.72 -19.78 -0.09 0.06 16 6 C -0.13 0.00 2.21 71.24 0.16 0.16 16 7 O -0.54 -0.97 12.65 -148.98 -1.89 -2.86 16 8 Si 1.02 -1.94 25.75 68.60 1.77 -0.17 16 9 H -0.22 1.13 7.11 99.48 0.71 1.84 16 10 H -0.27 -0.47 7.11 99.48 0.71 0.24 16 11 H -0.24 0.90 6.73 99.48 0.67 1.57 16 12 C 0.01 -0.05 4.74 22.49 0.11 0.06 16 13 O -0.64 2.30 9.14 -62.65 -0.57 1.72 16 14 S 2.68 -6.96 5.07 -56.49 -0.29 -7.24 16 15 O -0.95 -5.65 17.27 -118.78 -2.05 -7.70 16 16 O -0.93 2.38 13.83 -118.78 -1.64 0.73 16 17 C -0.65 5.93 5.28 22.27 0.12 6.04 16 18 C 0.01 -0.15 8.40 22.27 0.19 0.04 16 19 C -0.03 0.72 10.05 22.27 0.22 0.95 16 20 C -0.04 0.61 8.62 22.27 0.19 0.80 16 21 C 0.31 -0.71 4.82 22.27 0.11 -0.60 16 22 F -0.20 -5.04 16.66 44.97 0.75 -4.29 16 23 F -0.16 -1.95 15.31 44.97 0.69 -1.26 16 24 F -0.17 -2.57 15.31 44.97 0.69 -1.88 16 25 F -0.15 -1.63 15.32 44.97 0.69 -0.94 16 26 F -0.17 -2.95 15.31 44.97 0.69 -2.26 16 27 C -0.02 0.08 8.10 22.27 0.18 0.27 16 28 C -0.08 0.81 8.01 22.35 0.18 0.99 16 29 C -0.09 0.93 5.89 -19.78 -0.12 0.81 16 30 C -0.11 1.61 9.79 71.23 0.70 2.30 16 31 H 0.06 -0.74 7.67 -2.39 -0.02 -0.76 16 32 H 0.13 -1.88 8.14 -2.38 -0.02 -1.90 16 33 H 0.07 -1.01 7.65 -2.39 -0.02 -1.03 16 34 H 0.15 -1.14 3.12 -2.91 -0.01 -1.15 16 35 H 0.08 -0.03 5.59 -2.39 -0.01 -0.04 16 36 H 0.38 -0.92 8.60 -74.05 -0.64 -1.56 16 37 H 0.22 -5.15 7.62 -2.91 -0.02 -5.17 16 38 H 0.25 -8.37 8.06 -2.91 -0.02 -8.39 16 39 H 0.21 -3.41 7.40 -2.91 -0.02 -3.43 16 40 H 0.18 -0.01 6.96 -2.91 -0.02 -0.03 16 41 H 0.18 -2.91 7.94 -2.91 -0.02 -2.94 16 42 H 0.10 -1.90 8.14 -2.39 -0.02 -1.92 16 43 H 0.07 -0.79 7.52 -2.39 -0.02 -0.81 16 44 H 0.08 -1.34 8.08 -2.39 -0.02 -1.35 16 Total: 0.00 -40.84 399.32 2.51 -38.33 By element: Atomic # 1 Polarization: -28.03 SS G_CDS: 1.20 Total: -26.83 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: 3.37 Total: 13.15 kcal Atomic # 8 Polarization: 0.43 SS G_CDS: -7.04 Total: -6.61 kcal Atomic # 9 Polarization: -14.13 SS G_CDS: 3.50 Total: -10.63 kcal Atomic # 14 Polarization: -1.94 SS G_CDS: 1.77 Total: -0.17 kcal Atomic # 16 Polarization: -6.96 SS G_CDS: -0.29 Total: -7.24 kcal Total: -40.84 2.51 -38.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16525070_9043274.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 301.819 kcal (2) G-P(sol) polarization free energy of solvation -40.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 260.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 263.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 45.01 seconds