Wall clock time and date at job start Mon Mar 8 2021 14:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34228 * 116.99543 * 2 1 4 4 O 1.20826 * 120.00623 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99854 * 179.97438 * 3 2 1 6 6 H 1.08997 * 112.85037 * 311.19920 * 5 3 2 7 7 C 1.53781 * 113.68835 * 82.46735 * 5 3 2 8 8 C 1.53778 * 87.08594 * 139.99000 * 7 5 3 9 9 H 1.09009 * 113.61173 * 89.11029 * 8 7 5 10 10 S 1.81388 * 113.61774 * 220.01606 * 8 7 5 11 11 O 1.42102 * 110.54369 * 25.02709 * 10 8 7 12 12 O 1.42105 * 110.54350 * 161.77867 * 10 8 7 13 13 O 1.52196 * 104.44994 * 273.40350 * 10 8 7 14 14 C 1.35903 * 114.00304 * 75.81104 * 13 10 8 15 15 C 1.38712 * 120.05274 * 91.93953 * 14 13 10 16 16 C 1.50699 * 120.03351 * 0.02642 * 15 14 13 17 17 O 1.42897 * 109.46882 * 75.36520 * 16 15 14 18 18 Si 1.86299 * 109.47282 * 195.36760 * 16 15 14 19 19 C 1.38173 * 119.94103 * 179.75155 * 15 14 13 20 20 C 1.38247 * 120.05018 * 0.53183 * 19 15 14 21 21 C 1.38281 * 120.11763 * 359.74235 * 20 19 15 22 22 N 1.48001 * 119.97557 * 180.02562 * 21 20 19 23 23 O 1.21798 * 120.00049 * 179.97438 * 22 21 20 24 24 O 1.21805 * 119.99834 * 359.97438 * 22 21 20 25 25 C 1.38127 * 120.05322 * 359.97438 * 21 20 19 26 26 C 1.53781 * 113.61362 * 179.97438 * 5 3 2 27 27 H 1.08993 * 109.47737 * 300.00084 * 1 2 3 28 28 H 1.09000 * 109.47208 * 60.00817 * 1 2 3 29 29 H 1.09004 * 109.46668 * 180.02562 * 1 2 3 30 30 H 1.09005 * 113.61349 * 254.54014 * 7 5 3 31 31 H 1.09004 * 113.61794 * 25.43649 * 7 5 3 32 32 H 1.08995 * 109.46810 * 315.36774 * 16 15 14 33 33 H 0.96705 * 114.00163 * 65.09284 * 17 16 15 34 34 H 1.48507 * 110.00028 * 58.68272 * 18 16 15 35 35 H 1.48502 * 109.99943 * 179.97438 * 18 16 15 36 36 H 1.07997 * 119.97373 * 180.27660 * 19 15 14 37 37 H 1.08002 * 119.93826 * 179.72612 * 20 19 15 38 38 H 1.08001 * 120.02639 * 180.02562 * 25 21 20 39 39 H 1.09004 * 113.61881 * 334.49200 * 26 5 3 40 40 H 1.09006 * 113.61214 * 105.39288 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0612 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 0.0006 6 1 4.0233 0.6366 0.7567 7 6 4.1935 1.1227 -1.3952 8 6 5.1826 2.2264 -0.9850 9 1 6.0816 1.8480 -0.4982 10 16 5.5428 3.4094 -2.3120 11 8 4.4706 3.4557 -3.2434 12 8 6.1020 4.6019 -1.7787 13 8 6.6868 2.7728 -3.0881 14 6 6.3052 1.7461 -3.8927 15 6 5.9679 1.9890 -5.2161 16 6 6.0248 3.3919 -5.7636 17 8 7.3872 3.7623 -5.9839 18 14 5.0923 3.4680 -7.3747 19 6 5.5852 0.9428 -6.0334 20 6 5.5277 -0.3436 -5.5302 21 6 5.8580 -0.5875 -4.2098 22 7 5.7959 -1.9659 -3.6745 23 8 6.0872 -2.1813 -2.5116 24 8 5.4535 -2.8849 -4.3969 25 6 6.2468 0.4542 -3.3902 26 6 4.1076 2.7144 -0.0001 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 4.6642 0.1533 -1.5590 31 1 3.5272 1.4134 -2.2075 32 1 5.5723 4.0794 -5.0491 33 1 7.8309 3.2416 -6.6674 34 1 3.6815 3.0543 -7.1650 35 1 5.1403 4.8466 -7.9247 36 1 5.3268 1.1307 -7.0650 37 1 5.2240 -1.1594 -6.1695 38 1 6.5051 0.2631 -2.3591 39 1 3.4178 3.4402 -0.4310 40 1 4.5090 3.0303 0.9628 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16525092_13206342.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:16:39 Heat of formation + Delta-G solvation = -139.342149 kcal Electronic energy + Delta-G solvation = -34215.702002 eV Core-core repulsion = 29289.149293 eV Total energy + Delta-G solvation = -4926.552709 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.073 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.58348 -42.78620 -42.03954 -40.03866 -39.81599 -38.60537 -38.14126 -37.77280 -37.49981 -37.45243 -33.98015 -32.44537 -30.08599 -29.17775 -27.95759 -27.51917 -26.09027 -25.43406 -23.64656 -23.57866 -22.29719 -21.09285 -20.68108 -20.03816 -19.86388 -19.21405 -18.95158 -18.74399 -18.55966 -18.44472 -17.99091 -17.69566 -17.21758 -17.08667 -16.82781 -16.31813 -16.23319 -15.81448 -15.38651 -14.96882 -14.78842 -14.68339 -14.48946 -14.28582 -14.21385 -14.08572 -13.89790 -13.69599 -13.53316 -13.50851 -13.43080 -13.23567 -12.93213 -12.77389 -12.59298 -12.39736 -12.30969 -12.27952 -12.23118 -11.91809 -11.87057 -11.47646 -11.13128 -10.92785 -10.85643 -5.35679 -1.70059 -1.49427 -0.76442 -0.11160 -0.06127 0.58909 0.86101 0.95502 1.40493 1.46760 1.51967 1.77213 2.01972 2.22495 2.56558 2.70914 2.72778 2.72933 2.88759 2.97375 2.98768 3.11935 3.24255 3.29076 3.53288 3.67279 3.80930 3.84941 3.99473 4.01538 4.05481 4.07839 4.11352 4.14286 4.16877 4.18453 4.28971 4.35224 4.51689 4.59707 4.68353 5.07814 5.22917 6.21533 6.37946 6.55201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.354 6.354 3 C 0.467 3.533 4 O -0.498 6.498 5 C -0.092 4.092 6 H 0.142 0.858 7 C -0.106 4.106 8 C -0.652 4.652 9 H 0.172 0.828 10 S 2.590 3.410 11 O -0.943 6.943 12 O -0.904 6.904 13 O -0.645 6.645 14 C 0.099 3.901 15 C -0.039 4.039 16 C -0.097 4.097 17 O -0.522 6.522 18 Si 0.698 3.302 19 C -0.095 4.095 20 C -0.029 4.029 21 C -0.025 4.025 22 N 0.026 4.974 23 O -0.148 6.148 24 O -0.136 6.136 25 C -0.072 4.072 26 C -0.084 4.084 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.127 0.873 33 H 0.381 0.619 34 H -0.242 1.242 35 H -0.241 1.241 36 H 0.170 0.830 37 H 0.174 0.826 38 H 0.173 0.827 39 H 0.109 0.891 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.374 -4.360 -3.768 5.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.270 6.270 3 C 0.309 3.691 4 O -0.385 6.385 5 C -0.112 4.112 6 H 0.160 0.840 7 C -0.144 4.144 8 C -0.759 4.759 9 H 0.190 0.810 10 S 2.686 3.314 11 O -0.942 6.942 12 O -0.902 6.902 13 O -0.603 6.603 14 C 0.056 3.944 15 C -0.042 4.042 16 C -0.206 4.206 17 O -0.327 6.327 18 Si 0.596 3.404 19 C -0.113 4.113 20 C -0.048 4.048 21 C -0.108 4.108 22 N 0.549 4.451 23 O -0.365 6.365 24 O -0.356 6.356 25 C -0.093 4.093 26 C -0.123 4.123 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.129 0.871 32 H 0.145 0.855 33 H 0.229 0.771 34 H -0.166 1.166 35 H -0.165 1.165 36 H 0.187 0.813 37 H 0.192 0.808 38 H 0.191 0.809 39 H 0.127 0.873 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.447 -1.892 -4.341 4.756 hybrid contribution -0.058 -0.540 1.669 1.755 sum -0.505 -2.432 -2.671 3.648 Atomic orbital electron populations 1.23377 0.75539 1.04264 1.02889 1.86515 1.24029 1.32841 1.83633 1.23402 0.91421 0.81742 0.72543 1.90714 1.66814 1.36369 1.44600 1.22395 0.88137 1.00063 1.00570 0.83985 1.22915 0.95920 0.98342 0.97261 1.32309 1.08622 1.15904 1.19025 0.81019 1.05820 0.73379 0.76073 0.76165 1.93651 1.56932 1.86238 1.57350 1.93701 1.75738 1.40877 1.79922 1.85812 1.59978 1.52395 1.62095 1.17273 1.03480 0.83957 0.89711 1.21110 0.92198 0.98794 0.92116 1.25548 0.91362 0.91950 1.11739 1.86666 1.22220 1.61558 1.62234 0.95491 0.80821 0.86024 0.78034 1.21052 0.99323 0.90134 1.00776 1.21314 0.92042 0.99079 0.92398 1.20748 1.11923 0.82721 0.95439 1.43400 0.98403 1.02406 1.00941 1.94596 1.51135 1.89689 1.01053 1.94610 1.48420 1.35533 1.57013 1.21135 0.95723 0.89725 1.02699 1.22620 0.93598 0.95929 1.00124 0.91524 0.91627 0.87593 0.87761 0.87063 0.85543 0.77102 1.16589 1.16482 0.81312 0.80813 0.80921 0.87256 0.87140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.03 10.56 101.05 1.07 1.04 16 2 O -0.35 -0.35 10.57 -39.25 -0.41 -0.76 16 3 C 0.47 0.64 7.49 36.01 0.27 0.91 16 4 O -0.50 -2.13 15.65 -18.75 -0.29 -2.43 16 5 C -0.09 0.17 4.26 -90.96 -0.39 -0.22 16 6 H 0.14 -0.60 8.14 -51.93 -0.42 -1.03 16 7 C -0.11 0.25 5.53 -25.92 -0.14 0.11 16 8 C -0.65 1.60 3.60 -25.94 -0.09 1.51 16 9 H 0.17 -0.98 8.14 -51.92 -0.42 -1.41 16 10 S 2.59 3.31 4.94 -107.50 -0.53 2.78 16 11 O -0.94 -2.39 13.63 -67.04 -0.91 -3.30 16 12 O -0.90 -4.49 18.09 -67.04 -1.21 -5.71 16 13 O -0.64 -0.48 9.44 -51.76 -0.49 -0.97 16 14 C 0.10 -0.07 4.68 -39.22 -0.18 -0.25 16 15 C -0.04 0.06 4.73 -104.47 -0.49 -0.43 16 16 C -0.10 0.04 2.28 36.01 0.08 0.13 16 17 O -0.52 0.30 12.93 -35.23 -0.46 -0.15 16 18 Si 0.70 -1.90 29.85 -169.99 -5.07 -6.98 16 19 C -0.09 0.43 8.66 -39.60 -0.34 0.09 16 20 C -0.03 0.12 9.55 -39.56 -0.38 -0.26 16 21 C -0.03 0.05 6.85 -79.98 -0.55 -0.50 16 22 N 0.03 0.01 4.45 33.95 0.15 0.16 16 23 O -0.15 -0.21 18.45 -29.46 -0.54 -0.75 16 24 O -0.14 -0.19 18.45 -29.46 -0.54 -0.73 16 25 C -0.07 0.15 6.56 -39.43 -0.26 -0.11 16 26 C -0.08 0.14 6.99 -25.94 -0.18 -0.05 16 27 H 0.07 -0.05 8.13 -51.93 -0.42 -0.48 16 28 H 0.06 -0.05 8.13 -51.93 -0.42 -0.47 16 29 H 0.11 -0.33 8.14 -51.93 -0.42 -0.75 16 30 H 0.10 -0.41 6.37 -51.93 -0.33 -0.74 16 31 H 0.11 -0.19 7.32 -51.93 -0.38 -0.57 16 32 H 0.13 0.23 5.70 -51.93 -0.30 -0.06 16 33 H 0.38 -2.21 8.61 45.56 0.39 -1.82 16 34 H -0.24 0.13 7.11 56.52 0.40 0.53 16 35 H -0.24 -0.15 7.11 56.52 0.40 0.26 16 36 H 0.17 -1.36 5.15 -52.49 -0.27 -1.63 16 37 H 0.17 -1.09 7.61 -52.49 -0.40 -1.49 16 38 H 0.17 -0.72 6.28 -52.49 -0.33 -1.05 16 39 H 0.11 -0.04 7.40 -51.93 -0.38 -0.43 16 40 H 0.11 -0.38 8.14 -51.93 -0.42 -0.80 16 LS Contribution 355.63 15.07 5.36 5.36 Total: 0.00 -13.17 355.63 -10.28 -23.45 By element: Atomic # 1 Polarization: -8.20 SS G_CDS: -3.73 Total: -11.93 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -1.59 Total: 1.97 kcal Atomic # 7 Polarization: 0.01 SS G_CDS: 0.15 Total: 0.16 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -4.87 Total: -14.81 kcal Atomic # 14 Polarization: -1.90 SS G_CDS: -5.07 Total: -6.98 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -0.53 Total: 2.78 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -13.17 -10.28 -23.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16525092_13206342.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.890 kcal (2) G-P(sol) polarization free energy of solvation -13.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds