Wall clock time and date at job start Mon Mar 8 2021 14:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34228 * 116.99543 * 2 1 4 4 O 1.20826 * 120.00623 * 359.97438 * 3 2 1 5 5 C 1.50707 * 119.99854 * 179.97438 * 3 2 1 6 6 H 1.08997 * 112.85037 * 311.19920 * 5 3 2 7 7 C 1.53781 * 113.68835 * 82.46735 * 5 3 2 8 8 C 1.53778 * 87.08594 * 139.99000 * 7 5 3 9 9 H 1.09009 * 113.61173 * 89.11029 * 8 7 5 10 10 S 1.81388 * 113.61774 * 220.01606 * 8 7 5 11 11 O 1.42102 * 110.54369 * 25.02709 * 10 8 7 12 12 O 1.42105 * 110.54350 * 161.77867 * 10 8 7 13 13 O 1.52196 * 104.44994 * 273.40350 * 10 8 7 14 14 C 1.35903 * 114.00304 * 75.81104 * 13 10 8 15 15 C 1.38712 * 120.05274 * 91.93953 * 14 13 10 16 16 C 1.50699 * 120.03351 * 0.02642 * 15 14 13 17 17 O 1.42897 * 109.46882 * 75.36520 * 16 15 14 18 18 Si 1.86299 * 109.47282 * 195.36760 * 16 15 14 19 19 C 1.38173 * 119.94103 * 179.75155 * 15 14 13 20 20 C 1.38247 * 120.05018 * 0.53183 * 19 15 14 21 21 C 1.38281 * 120.11763 * 359.74235 * 20 19 15 22 22 N 1.48001 * 119.97557 * 180.02562 * 21 20 19 23 23 O 1.21798 * 120.00049 * 179.97438 * 22 21 20 24 24 O 1.21805 * 119.99834 * 359.97438 * 22 21 20 25 25 C 1.38127 * 120.05322 * 359.97438 * 21 20 19 26 26 C 1.53781 * 113.61362 * 179.97438 * 5 3 2 27 27 H 1.08993 * 109.47737 * 300.00084 * 1 2 3 28 28 H 1.09000 * 109.47208 * 60.00817 * 1 2 3 29 29 H 1.09004 * 109.46668 * 180.02562 * 1 2 3 30 30 H 1.09005 * 113.61349 * 254.54014 * 7 5 3 31 31 H 1.09004 * 113.61794 * 25.43649 * 7 5 3 32 32 H 1.08995 * 109.46810 * 315.36774 * 16 15 14 33 33 H 0.96705 * 114.00163 * 65.09284 * 17 16 15 34 34 H 1.48507 * 110.00028 * 58.68272 * 18 16 15 35 35 H 1.48502 * 109.99943 * 179.97438 * 18 16 15 36 36 H 1.07997 * 119.97373 * 180.27660 * 19 15 14 37 37 H 1.08002 * 119.93826 * 179.72612 * 20 19 15 38 38 H 1.08001 * 120.02639 * 180.02562 * 25 21 20 39 39 H 1.09004 * 113.61881 * 334.49200 * 26 5 3 40 40 H 1.09006 * 113.61214 * 105.39288 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0612 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 0.0006 6 1 4.0233 0.6366 0.7567 7 6 4.1935 1.1227 -1.3952 8 6 5.1826 2.2264 -0.9850 9 1 6.0816 1.8480 -0.4982 10 16 5.5428 3.4094 -2.3120 11 8 4.4706 3.4557 -3.2434 12 8 6.1020 4.6019 -1.7787 13 8 6.6868 2.7728 -3.0881 14 6 6.3052 1.7461 -3.8927 15 6 5.9679 1.9890 -5.2161 16 6 6.0248 3.3919 -5.7636 17 8 7.3872 3.7623 -5.9839 18 14 5.0923 3.4680 -7.3747 19 6 5.5852 0.9428 -6.0334 20 6 5.5277 -0.3436 -5.5302 21 6 5.8580 -0.5875 -4.2098 22 7 5.7959 -1.9659 -3.6745 23 8 6.0872 -2.1813 -2.5116 24 8 5.4535 -2.8849 -4.3969 25 6 6.2468 0.4542 -3.3902 26 6 4.1076 2.7144 -0.0001 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 4.6642 0.1533 -1.5590 31 1 3.5272 1.4134 -2.2075 32 1 5.5723 4.0794 -5.0491 33 1 7.8309 3.2416 -6.6674 34 1 3.6815 3.0543 -7.1650 35 1 5.1403 4.8466 -7.9247 36 1 5.3268 1.1307 -7.0650 37 1 5.2240 -1.1594 -6.1695 38 1 6.5051 0.2631 -2.3591 39 1 3.4178 3.4402 -0.4310 40 1 4.5090 3.0303 0.9628 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16525092_13206342.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 14:16:37 Heat of formation + Delta-G solvation = -144.058679 kcal Electronic energy + Delta-G solvation = -34215.906526 eV Core-core repulsion = 29289.149293 eV Total energy + Delta-G solvation = -4926.757233 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.073 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.49536 -42.71068 -42.06364 -39.91666 -39.73848 -38.73586 -38.04856 -37.75607 -37.62935 -37.56265 -33.80887 -32.23757 -30.03794 -29.08671 -27.87192 -27.36726 -26.00925 -25.25077 -23.59845 -23.47076 -22.23968 -21.01700 -20.61653 -19.98084 -19.83326 -19.24675 -18.86392 -18.66923 -18.55848 -18.37967 -17.91718 -17.68727 -17.15020 -16.95790 -16.78974 -16.28041 -16.10917 -15.57634 -15.26032 -14.93720 -14.73609 -14.64180 -14.41923 -14.16637 -14.10405 -14.02476 -13.85553 -13.77256 -13.64629 -13.51279 -13.29402 -13.14362 -12.89036 -12.77841 -12.53511 -12.34416 -12.32173 -12.22688 -12.07078 -11.95599 -11.81272 -11.52003 -10.92180 -10.81098 -10.65794 -5.19569 -1.60622 -1.44736 -0.57455 -0.03366 0.04295 0.63009 0.89199 1.00743 1.56367 1.56752 1.69115 1.91958 2.05781 2.25396 2.70462 2.80665 2.89948 3.00792 3.02136 3.10507 3.22460 3.30145 3.45176 3.51756 3.74680 3.79860 4.00117 4.06957 4.13349 4.18582 4.20267 4.23360 4.24889 4.32190 4.36907 4.42969 4.55290 4.56403 4.62753 4.78184 4.86834 5.15420 5.20401 6.35478 6.49260 6.59766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.358 6.358 3 C 0.464 3.536 4 O -0.536 6.536 5 C -0.086 4.086 6 H 0.176 0.824 7 C -0.108 4.108 8 C -0.624 4.624 9 H 0.213 0.787 10 S 2.582 3.418 11 O -0.967 6.967 12 O -0.956 6.956 13 O -0.651 6.651 14 C 0.073 3.927 15 C -0.051 4.051 16 C -0.121 4.121 17 O -0.543 6.543 18 Si 0.815 3.185 19 C -0.082 4.082 20 C -0.014 4.014 21 C -0.034 4.034 22 N 0.029 4.971 23 O -0.165 6.165 24 O -0.153 6.153 25 C -0.068 4.068 26 C -0.098 4.098 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.131 0.869 30 H 0.126 0.874 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.403 0.597 34 H -0.267 1.267 35 H -0.293 1.293 36 H 0.207 0.793 37 H 0.202 0.798 38 H 0.191 0.809 39 H 0.089 0.911 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.795 -6.686 -4.304 7.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.274 6.274 3 C 0.308 3.692 4 O -0.426 6.426 5 C -0.106 4.106 6 H 0.194 0.806 7 C -0.146 4.146 8 C -0.734 4.734 9 H 0.230 0.770 10 S 2.682 3.318 11 O -0.966 6.966 12 O -0.955 6.955 13 O -0.609 6.609 14 C 0.031 3.969 15 C -0.054 4.054 16 C -0.228 4.228 17 O -0.352 6.352 18 Si 0.716 3.284 19 C -0.100 4.100 20 C -0.033 4.033 21 C -0.117 4.117 22 N 0.549 4.451 23 O -0.380 6.380 24 O -0.371 6.371 25 C -0.089 4.089 26 C -0.137 4.137 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.149 0.851 30 H 0.145 0.855 31 H 0.119 0.881 32 H 0.113 0.887 33 H 0.254 0.746 34 H -0.193 1.193 35 H -0.220 1.220 36 H 0.223 0.777 37 H 0.219 0.781 38 H 0.208 0.792 39 H 0.107 0.893 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.014 -4.239 -4.886 6.469 hybrid contribution -0.223 0.201 1.820 1.845 sum -0.209 -4.038 -3.065 5.074 Atomic orbital electron populations 1.23574 0.74843 1.05830 1.02535 1.86518 1.24889 1.32648 1.83298 1.24059 0.92641 0.81261 0.71283 1.90699 1.67899 1.37521 1.46461 1.22588 0.86037 1.00257 1.01694 0.80638 1.23013 0.95675 0.99146 0.96769 1.32194 1.10109 1.14220 1.16902 0.77017 1.05855 0.72811 0.76372 0.76718 1.93604 1.57492 1.86813 1.58663 1.93629 1.76683 1.44381 1.80769 1.85776 1.59478 1.53056 1.62610 1.17555 1.05188 0.84077 0.90119 1.21269 0.92749 0.98962 0.92417 1.25869 0.91801 0.92118 1.12995 1.86613 1.22480 1.62578 1.63531 0.94407 0.77554 0.82491 0.73986 1.21400 0.97702 0.88963 1.01886 1.21705 0.90040 0.99858 0.91725 1.20833 1.13172 0.81372 0.96353 1.43624 0.97770 1.03039 1.00697 1.94584 1.51658 1.90166 1.01576 1.94602 1.49020 1.36469 1.56978 1.21241 0.95051 0.88945 1.03649 1.22769 0.93638 0.96056 1.01204 0.91802 0.92152 0.85081 0.85540 0.88112 0.88739 0.74634 1.19294 1.21997 0.77676 0.78135 0.79193 0.89250 0.84967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.04 10.56 113.37 1.20 1.16 16 2 O -0.36 -0.63 10.57 -51.40 -0.54 -1.18 16 3 C 0.46 1.41 7.49 71.24 0.53 1.95 16 4 O -0.54 -5.42 15.65 21.96 0.34 -5.07 16 5 C -0.09 0.40 4.26 -11.01 -0.05 0.35 16 6 H 0.18 -1.99 8.14 -2.39 -0.02 -2.01 16 7 C -0.11 0.60 5.53 31.12 0.17 0.77 16 8 C -0.62 3.35 3.60 31.11 0.11 3.47 16 9 H 0.21 -2.92 8.14 -2.38 -0.02 -2.94 16 10 S 2.58 11.43 4.94 -56.49 -0.28 11.15 16 11 O -0.97 -7.40 13.63 -118.57 -1.62 -9.02 16 12 O -0.96 -12.37 18.09 -118.57 -2.15 -14.52 16 13 O -0.65 -1.85 9.44 -61.55 -0.58 -2.43 16 14 C 0.07 -0.08 4.68 22.51 0.11 0.02 16 15 C -0.05 0.16 4.73 -19.77 -0.09 0.07 16 16 C -0.12 -0.01 2.28 71.24 0.16 0.15 16 17 O -0.54 0.08 12.93 -148.98 -1.93 -1.85 16 18 Si 0.82 -4.52 29.85 68.60 2.05 -2.48 16 19 C -0.08 0.90 8.66 22.26 0.19 1.09 16 20 C -0.01 0.15 9.55 22.28 0.21 0.36 16 21 C -0.03 0.18 6.85 36.36 0.25 0.43 16 22 N 0.03 -0.01 4.45 -46.51 -0.21 -0.22 16 23 O -0.17 -0.28 18.45 18.89 0.35 0.07 16 24 O -0.15 -0.25 18.45 18.88 0.35 0.10 16 25 C -0.07 0.35 6.56 22.37 0.15 0.50 16 26 C -0.10 0.31 6.99 31.11 0.22 0.53 16 27 H 0.06 -0.06 8.13 -2.39 -0.02 -0.08 16 28 H 0.06 -0.03 8.13 -2.39 -0.02 -0.05 16 29 H 0.13 -0.92 8.14 -2.38 -0.02 -0.94 16 30 H 0.13 -1.25 6.37 -2.38 -0.02 -1.26 16 31 H 0.10 -0.29 7.32 -2.39 -0.02 -0.31 16 32 H 0.10 0.62 5.70 -2.39 -0.01 0.61 16 33 H 0.40 -4.69 8.61 -74.05 -0.64 -5.33 16 34 H -0.27 0.41 7.11 99.48 0.71 1.12 16 35 H -0.29 -0.80 7.11 99.48 0.71 -0.10 16 36 H 0.21 -3.94 5.15 -2.91 -0.01 -3.95 16 37 H 0.20 -3.17 7.61 -2.91 -0.02 -3.19 16 38 H 0.19 -1.88 6.28 -2.91 -0.02 -1.90 16 39 H 0.09 0.11 7.40 -2.38 -0.02 0.10 16 40 H 0.13 -1.02 8.14 -2.38 -0.02 -1.04 16 Total: 0.00 -35.37 355.63 -0.51 -35.87 By element: Atomic # 1 Polarization: -21.81 SS G_CDS: 0.54 Total: -21.27 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 3.16 Total: 10.84 kcal Atomic # 7 Polarization: -0.01 SS G_CDS: -0.21 Total: -0.22 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -5.77 Total: -33.89 kcal Atomic # 14 Polarization: -4.52 SS G_CDS: 2.05 Total: -2.48 kcal Atomic # 16 Polarization: 11.43 SS G_CDS: -0.28 Total: 11.15 kcal Total: -35.37 -0.51 -35.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16525092_13206342.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.184 kcal (2) G-P(sol) polarization free energy of solvation -35.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds