Wall clock time and date at job start Mon Mar 8 2021 09:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86305 * 1 3 3 C 1.86299 * 109.47271 * 2 1 4 4 C 1.86295 * 109.47053 * 239.99798 * 2 1 3 5 5 C 1.86301 * 109.46724 * 119.99720 * 2 1 3 6 6 C 1.53003 * 109.47246 * 60.00251 * 5 2 1 7 7 C 1.52999 * 109.47084 * 179.97438 * 6 5 2 8 8 S 1.81399 * 109.46798 * 179.97438 * 7 6 5 9 9 O 1.42108 * 110.54379 * 68.37624 * 8 7 6 10 10 O 1.42093 * 110.54516 * 291.62212 * 8 7 6 11 11 O 1.52202 * 104.44965 * 179.97438 * 8 7 6 12 12 C 1.35907 * 113.99301 * 75.00198 * 11 8 7 13 13 C 1.38715 * 120.05441 * 270.02045 * 12 11 8 14 14 C 1.38169 * 119.94062 * 179.97438 * 13 12 11 15 15 N 1.48005 * 119.97006 * 179.97438 * 14 13 12 16 16 O 1.21800 * 120.00163 * 0.02562 * 15 14 13 17 17 O 1.21799 * 119.99827 * 179.97438 * 15 14 13 18 18 C 1.38241 * 120.05573 * 359.97438 * 14 13 12 19 19 C 1.38286 * 120.11515 * 359.76098 * 18 14 13 20 20 C 1.38128 * 120.05286 * 0.51435 * 19 18 14 21 21 C 1.50697 * 120.02884 * 179.74578 * 20 19 18 22 22 O 1.42906 * 109.46831 * 254.72696 * 21 20 19 23 23 Si 1.86300 * 109.47007 * 14.72085 * 21 20 19 24 24 H 1.48503 * 109.46942 * 60.00611 * 23 21 20 25 25 H 1.48503 * 109.47276 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47372 * 300.00074 * 23 21 20 27 27 H 1.09001 * 109.47170 * 300.00303 * 1 2 3 28 28 H 1.08997 * 109.47040 * 59.99788 * 1 2 3 29 29 H 1.08999 * 109.47364 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47306 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.46907 * 299.99863 * 3 2 1 32 32 H 1.09001 * 109.47271 * 59.99759 * 3 2 1 33 33 H 1.08999 * 109.46975 * 300.00164 * 4 2 1 34 34 H 1.09004 * 109.47210 * 60.00084 * 4 2 1 35 35 H 1.09005 * 109.47100 * 180.02562 * 4 2 1 36 36 H 1.09001 * 109.47278 * 299.99910 * 5 2 1 37 37 H 1.09005 * 109.46991 * 179.97438 * 5 2 1 38 38 H 1.08998 * 109.46904 * 59.99272 * 6 5 2 39 39 H 1.09005 * 109.46741 * 299.99682 * 6 5 2 40 40 H 1.09001 * 109.47230 * 59.99788 * 7 6 5 41 41 H 1.09005 * 109.47201 * 299.99558 * 7 6 5 42 42 H 1.07992 * 120.02762 * 359.95971 * 13 12 11 43 43 H 1.08003 * 119.94175 * 180.02562 * 18 14 13 44 44 H 1.07995 * 119.97780 * 180.28085 * 19 18 14 45 45 H 1.09000 * 109.47374 * 134.72269 * 21 20 19 46 46 H 0.96693 * 114.00047 * 60.00191 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4841 1.7564 0.0000 4 6 2.4840 -0.8783 -1.5211 5 6 2.4839 -0.8782 1.5212 6 6 1.9739 -2.3207 1.5213 7 6 2.4844 -3.0421 2.7702 8 16 1.8791 -4.7521 2.7706 9 8 2.4909 -5.4979 1.7271 10 8 0.4719 -4.7829 2.9652 11 8 2.4483 -5.3562 4.0464 12 6 1.8181 -4.9491 5.1796 13 6 2.2606 -3.8202 5.8533 14 6 1.6178 -3.4081 7.0049 15 7 2.0898 -2.2040 7.7245 16 8 3.0441 -1.5765 7.3013 17 8 1.5233 -1.8400 8.7394 18 6 0.5343 -4.1195 7.4854 19 6 0.0879 -5.2422 6.8126 20 6 0.7305 -5.6615 5.6641 21 6 0.2470 -6.8883 4.9346 22 8 1.1463 -7.9721 5.1772 23 14 -1.4533 -7.3438 5.5446 24 1 -2.3878 -6.2176 5.2924 25 1 -1.9296 -8.5531 4.8262 26 1 -1.3978 -7.6242 7.0018 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.5740 1.7564 0.0005 31 1 2.1208 2.2702 -0.8900 32 1 2.1207 2.2703 0.8900 33 1 2.1206 -1.9059 -1.5210 34 1 2.1207 -0.3644 -2.4111 35 1 3.5741 -0.8787 -1.5208 36 1 2.1206 -0.3643 2.4112 37 1 3.5740 -0.8786 1.5210 38 1 2.3372 -2.8345 0.6313 39 1 0.8839 -2.3207 1.5212 40 1 2.1214 -2.5283 3.6604 41 1 3.5744 -3.0421 2.7698 42 1 3.1069 -3.2640 5.4781 43 1 0.0330 -3.7955 8.3855 44 1 -0.7616 -5.7937 7.1875 45 1 0.2062 -6.6825 3.8649 46 1 1.2322 -8.2104 6.1104 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16525092_14927650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 09:57:13 Heat of formation + Delta-G solvation = -150.227731 kcal Electronic energy + Delta-G solvation = -31691.432927 eV Core-core repulsion = 27222.480508 eV Total energy + Delta-G solvation = -4468.952419 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 377.106 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.55880 -42.75695 -39.99718 -38.52708 -38.13851 -37.76504 -37.41074 -36.16163 -33.95597 -32.41578 -29.83912 -29.20381 -28.59108 -28.50116 -28.44347 -26.10047 -25.45240 -23.65289 -23.18515 -22.17776 -20.60654 -20.03547 -19.45817 -18.99074 -18.84805 -18.73512 -18.45842 -17.54516 -17.19645 -16.80054 -16.49902 -16.11683 -15.86549 -15.63581 -15.07977 -14.82975 -14.66105 -14.41417 -14.33524 -14.25970 -14.16665 -13.89101 -13.77338 -13.73816 -13.57922 -13.46100 -13.36172 -13.32956 -13.25172 -13.20965 -13.16843 -12.77658 -12.69612 -12.40158 -12.37109 -12.28838 -12.13716 -12.11129 -12.01895 -11.15088 -10.93023 -10.89251 -10.88802 -10.83716 -10.64703 -1.68273 -1.43922 -0.72603 -0.10466 -0.04496 0.66420 0.76378 1.11653 1.29832 1.47185 1.62275 1.68845 1.75805 1.77324 2.25330 2.50179 2.52803 2.72026 2.73816 2.92832 2.99453 3.10893 3.25611 3.33319 3.39090 3.59058 3.83850 3.85726 4.04339 4.06918 4.15696 4.19249 4.32376 4.34167 4.49413 4.64146 4.65224 4.68050 4.68932 4.69551 4.69983 4.70556 4.78288 5.08455 5.14917 5.40085 5.47428 5.48857 6.20470 6.38763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.003 2.997 3 C -0.449 4.449 4 C -0.454 4.454 5 C -0.408 4.408 6 C -0.101 4.101 7 C -0.647 4.647 8 S 2.575 3.425 9 O -0.908 6.908 10 O -0.947 6.947 11 O -0.647 6.647 12 C 0.100 3.900 13 C -0.072 4.072 14 C -0.024 4.024 15 N 0.025 4.975 16 O -0.147 6.147 17 O -0.137 6.137 18 C -0.028 4.028 19 C -0.107 4.107 20 C -0.041 4.041 21 C -0.112 4.112 22 O -0.521 6.521 23 Si 0.953 3.047 24 H -0.235 1.235 25 H -0.237 1.237 26 H -0.243 1.243 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.133 0.867 41 H 0.145 0.855 42 H 0.174 0.826 43 H 0.173 0.827 44 H 0.165 0.835 45 H 0.135 0.865 46 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.440 0.484 1.498 2.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.200 2.800 3 C -0.557 4.557 4 C -0.561 4.561 5 C -0.493 4.493 6 C -0.140 4.140 7 C -0.775 4.775 8 S 2.672 3.328 9 O -0.906 6.906 10 O -0.945 6.945 11 O -0.605 6.605 12 C 0.057 3.943 13 C -0.093 4.093 14 C -0.107 4.107 15 N 0.548 4.452 16 O -0.364 6.364 17 O -0.357 6.357 18 C -0.048 4.048 19 C -0.126 4.126 20 C -0.043 4.043 21 C -0.221 4.221 22 O -0.326 6.326 23 Si 0.771 3.229 24 H -0.158 1.158 25 H -0.160 1.160 26 H -0.167 1.167 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.151 0.849 41 H 0.164 0.836 42 H 0.191 0.809 43 H 0.191 0.809 44 H 0.183 0.817 45 H 0.152 0.848 46 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -3.557 -1.082 0.557 3.760 hybrid contribution 1.200 1.103 0.576 1.728 sum -2.357 0.020 1.134 2.616 Atomic orbital electron populations 1.26177 1.20690 1.04560 1.04652 0.79312 0.67231 0.67133 0.66348 1.26101 1.06310 1.18729 1.04560 1.26178 1.06431 1.08128 1.15372 1.26191 1.06491 1.00135 1.16498 1.21003 1.01714 0.97205 0.94046 1.30957 1.14121 1.23511 1.08955 1.06169 0.74960 0.77603 0.74060 1.93701 1.77306 1.67500 1.52072 1.93630 1.31340 1.86187 1.83364 1.85820 1.69787 1.75947 1.28940 1.17286 0.94014 0.94905 0.88096 1.21130 0.99772 0.95197 0.93231 1.20768 1.01168 0.91694 0.97090 1.43409 1.00028 1.01224 1.00543 1.94602 1.17701 1.53866 1.70238 1.94603 1.57344 1.71225 1.12485 1.21291 0.91862 0.91914 0.99722 1.21218 1.00853 0.96599 0.93894 1.21090 0.92006 0.96742 0.94494 1.25582 1.05999 0.84410 1.06080 1.86672 1.65773 1.48952 1.31213 0.85641 0.73902 0.83069 0.80261 1.15781 1.15997 1.16662 0.91174 0.91024 0.91172 0.91181 0.91105 0.91215 0.91139 0.91037 0.91081 0.89950 0.89772 0.89670 0.89794 0.84897 0.83649 0.80863 0.80948 0.81750 0.84767 0.77386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.89 8.65 101.05 0.87 1.76 16 2 Si 1.00 -3.23 12.19 -169.99 -2.07 -5.31 16 3 C -0.45 0.86 8.65 101.05 0.87 1.73 16 4 C -0.45 0.85 8.65 101.05 0.87 1.72 16 5 C -0.41 1.17 4.45 37.16 0.17 1.34 16 6 C -0.10 0.22 4.59 -26.73 -0.12 0.09 16 7 C -0.65 1.56 5.46 37.16 0.20 1.76 16 8 S 2.58 2.18 4.93 -107.50 -0.53 1.65 16 9 O -0.91 -3.95 18.09 -67.04 -1.21 -5.16 16 10 O -0.95 -1.64 14.24 -67.03 -0.95 -2.60 16 11 O -0.65 -0.50 9.48 -51.77 -0.49 -0.99 16 12 C 0.10 -0.03 4.78 -39.22 -0.19 -0.22 16 13 C -0.07 0.10 7.97 -39.43 -0.31 -0.21 16 14 C -0.02 0.02 6.85 -79.98 -0.55 -0.52 16 15 N 0.03 0.04 4.45 33.95 0.15 0.19 16 16 O -0.15 -0.37 18.45 -29.46 -0.54 -0.91 16 17 O -0.14 -0.31 18.44 -29.46 -0.54 -0.85 16 18 C -0.03 0.09 9.55 -39.56 -0.38 -0.29 16 19 C -0.11 0.35 8.66 -39.60 -0.34 0.01 16 20 C -0.04 0.04 4.68 -104.47 -0.49 -0.45 16 21 C -0.11 0.04 2.24 36.00 0.08 0.12 16 22 O -0.52 0.15 12.88 -35.23 -0.45 -0.30 16 23 Si 0.95 -2.02 25.48 -169.99 -4.33 -6.35 16 24 H -0.24 0.41 7.11 56.52 0.40 0.81 16 25 H -0.24 0.15 7.11 56.52 0.40 0.55 16 26 H -0.24 0.98 6.74 56.52 0.38 1.36 16 27 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 28 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 29 H 0.07 -0.14 7.79 -51.93 -0.40 -0.54 16 30 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 31 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 32 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 33 H 0.07 -0.13 7.79 -51.93 -0.40 -0.53 16 34 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 35 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 36 H 0.08 -0.27 7.96 -51.93 -0.41 -0.68 16 37 H 0.08 -0.28 7.96 -51.93 -0.41 -0.69 16 38 H 0.08 -0.24 7.79 -51.93 -0.40 -0.65 16 39 H 0.08 -0.26 7.79 -51.93 -0.40 -0.67 16 40 H 0.13 -0.54 6.60 -51.92 -0.34 -0.89 16 41 H 0.15 -0.62 8.14 -51.92 -0.42 -1.05 16 42 H 0.17 -0.59 7.05 -52.49 -0.37 -0.96 16 43 H 0.17 -0.88 7.61 -52.48 -0.40 -1.28 16 44 H 0.17 -0.94 4.89 -52.49 -0.26 -1.20 16 45 H 0.13 0.12 5.43 -51.93 -0.28 -0.16 16 46 H 0.38 -1.79 8.70 45.56 0.40 -1.40 16 LS Contribution 396.02 15.07 5.97 5.97 Total: 0.00 -9.41 396.02 -10.16 -19.57 By element: Atomic # 1 Polarization: -5.92 SS G_CDS: -5.83 Total: -11.75 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: 0.69 Total: 6.85 kcal Atomic # 7 Polarization: 0.04 SS G_CDS: 0.15 Total: 0.19 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -4.20 Total: -10.81 kcal Atomic # 14 Polarization: -5.26 SS G_CDS: -6.40 Total: -11.66 kcal Atomic # 16 Polarization: 2.18 SS G_CDS: -0.53 Total: 1.65 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -9.41 -10.16 -19.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16525092_14927650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.659 kcal (2) G-P(sol) polarization free energy of solvation -9.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds