Wall clock time and date at job start Mon Mar 8 2021 10:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50699 * 109.47152 * 239.99653 * 2 1 3 5 5 C 1.38234 * 119.99752 * 119.73191 * 4 2 1 6 6 C 1.38233 * 119.99769 * 179.80721 * 5 4 2 7 7 C 1.38239 * 120.00034 * 0.41750 * 6 5 4 8 8 S 1.76203 * 120.00235 * 179.78995 * 7 6 5 9 9 O 1.42104 * 106.39918 * 23.56069 * 8 7 6 10 10 O 1.42091 * 106.40315 * 156.48304 * 8 7 6 11 11 N 1.65608 * 107.21817 * 270.02378 * 8 7 6 12 12 C 1.46506 * 119.99874 * 64.99528 * 11 8 7 13 13 H 1.09005 * 109.46726 * 25.00543 * 12 11 8 14 14 C 1.52995 * 109.46625 * 144.99892 * 12 11 8 15 15 C 1.53004 * 109.47008 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.47065 * 300.00329 * 15 14 12 17 17 H 1.08997 * 109.46985 * 299.99624 * 16 15 14 18 18 N 1.46895 * 109.47073 * 179.97438 * 16 15 14 19 19 C 1.47009 * 111.00642 * 298.63774 * 18 16 15 20 20 C 1.53098 * 109.26275 * 177.60601 * 19 18 16 21 21 O 1.43011 * 109.25807 * 56.84959 * 20 19 18 22 22 C 1.43021 * 113.73525 * 301.32750 * 21 20 19 23 23 C 1.47010 * 111.00083 * 174.99755 * 18 16 15 24 24 C 1.53005 * 109.47124 * 59.99819 * 16 15 14 25 25 C 1.52992 * 109.47334 * 264.99952 * 12 11 8 26 26 C 1.38239 * 120.00250 * 359.81477 * 7 6 5 27 27 C 1.38235 * 119.99673 * 359.97438 * 26 7 6 28 28 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 29 29 H 1.09008 * 109.46477 * 119.99697 * 2 1 3 30 30 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 31 31 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 32 32 H 1.07998 * 120.00277 * 359.97438 * 5 4 2 33 33 H 1.07996 * 120.00111 * 180.20725 * 6 5 4 34 34 H 0.96994 * 119.99896 * 245.00146 * 11 8 7 35 35 H 1.08995 * 109.47740 * 300.00153 * 14 12 11 36 36 H 1.09006 * 109.47423 * 60.00464 * 14 12 11 37 37 H 1.08997 * 109.46912 * 59.99997 * 15 14 12 38 38 H 1.08998 * 109.46908 * 180.02562 * 15 14 12 39 39 H 1.09004 * 109.50347 * 297.54782 * 19 18 16 40 40 H 1.09007 * 109.50628 * 57.66814 * 19 18 16 41 41 H 1.08999 * 109.50549 * 296.90815 * 20 19 18 42 42 H 1.09001 * 109.50328 * 176.78004 * 20 19 18 43 43 H 1.08992 * 109.50988 * 298.73528 * 22 21 20 44 44 H 1.08999 * 109.54004 * 178.62911 * 22 21 20 45 45 H 1.08997 * 109.50810 * 302.32793 * 23 18 16 46 46 H 1.08998 * 109.50419 * 62.46076 * 23 18 16 47 47 H 1.09000 * 109.46634 * 60.00018 * 24 16 15 48 48 H 1.09000 * 109.46729 * 179.97438 * 24 16 15 49 49 H 1.09000 * 109.47481 * 300.00700 * 25 12 11 50 50 H 1.09008 * 109.46794 * 60.00306 * 25 12 11 51 51 H 1.07997 * 120.00154 * 179.97438 * 26 7 6 52 52 H 1.07995 * 120.00391 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7215 -0.0371 -2.1431 6 6 3.1856 -0.6899 -3.2697 7 6 2.8524 -2.0137 -3.4880 8 16 3.4394 -2.8443 -4.9269 9 8 4.6064 -2.1487 -5.3436 10 8 3.4291 -4.2319 -4.6214 11 7 2.3106 -2.6192 -6.1176 12 6 2.0526 -1.2741 -6.6375 13 1 2.9339 -0.6508 -6.4860 14 6 1.7376 -1.3570 -8.1324 15 6 1.4688 0.0479 -8.6757 16 6 0.2777 0.6611 -7.9366 17 1 -0.6038 0.0382 -8.0882 18 7 0.0200 2.0101 -8.4578 19 6 1.1782 2.8891 -8.2407 20 6 0.8904 4.2637 -8.8503 21 8 -0.3068 4.7936 -8.2748 22 6 -1.4550 3.9632 -8.4681 23 6 -1.1909 2.5855 -7.8546 24 6 0.5928 0.7440 -6.4417 25 6 0.8613 -0.6614 -5.8985 26 6 2.0583 -2.6857 -2.5777 27 6 1.5978 -2.0341 -1.4489 28 1 -0.3934 0.4418 0.7650 29 1 1.7923 -0.5138 0.8901 30 1 1.5616 2.4678 -1.2086 31 1 1.5878 2.4586 1.2241 32 1 2.9785 0.9983 -1.9747 33 1 3.8057 -0.1648 -3.9812 34 1 1.8202 -3.3780 -6.4706 35 1 2.5862 -1.7935 -8.6590 36 1 0.8563 -1.9803 -8.2840 37 1 2.3502 0.6708 -8.5241 38 1 1.2439 -0.0113 -9.7405 39 1 1.3586 2.9958 -7.1710 40 1 2.0579 2.4565 -8.7174 41 1 0.7631 4.1643 -9.9283 42 1 1.7228 4.9357 -8.6419 43 1 -1.6506 3.8551 -9.5349 44 1 -2.3193 4.4177 -7.9839 45 1 -2.0407 1.9314 -8.0495 46 1 -1.0484 2.6875 -6.7788 47 1 1.4743 1.3670 -6.2902 48 1 -0.2556 1.1814 -5.9153 49 1 -0.0200 -1.2847 -6.0500 50 1 1.0858 -0.6023 -4.8334 51 1 1.7976 -3.7198 -2.7484 52 1 0.9770 -2.5589 -0.7378 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607746_13421422.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:27:29 Heat of formation + Delta-G solvation = -112.692569 kcal Electronic energy + Delta-G solvation = -35377.382013 eV Core-core repulsion = 30856.288201 eV Total energy + Delta-G solvation = -4521.093812 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.165 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.25656 -40.67020 -39.45338 -38.42330 -37.86665 -37.06746 -36.88829 -33.98083 -33.22233 -32.31448 -32.22215 -31.69822 -29.70953 -27.27469 -26.82060 -25.15719 -24.13712 -23.82757 -22.94162 -22.81387 -21.71375 -20.78677 -20.17165 -19.20068 -18.68250 -18.50665 -17.82007 -17.56628 -17.15575 -17.05973 -16.82131 -16.13259 -16.07759 -15.96184 -15.85323 -15.60079 -15.48999 -15.42517 -15.29570 -14.71293 -14.63807 -14.41139 -14.37658 -14.05609 -13.98435 -13.80333 -13.42814 -13.33480 -13.28536 -13.22826 -13.11040 -12.92346 -12.63096 -12.55675 -12.47158 -12.29986 -12.19029 -11.97973 -11.90886 -11.81135 -11.57608 -11.47124 -11.22878 -10.76547 -10.67283 -10.49575 -10.30654 -10.15267 -9.30140 -5.00392 -0.77050 -0.40391 0.16530 1.17610 1.51974 1.83901 1.86611 2.27075 2.66333 2.72833 2.94974 3.17336 3.17766 3.58243 3.61535 3.65239 3.72779 3.80006 3.82325 3.91045 3.98932 4.05928 4.08560 4.14774 4.18444 4.23188 4.26738 4.27833 4.32554 4.36689 4.41042 4.47243 4.51863 4.57082 4.60819 4.68891 4.71327 4.77152 4.80289 4.80756 4.90887 4.94983 4.96221 4.97320 5.07492 5.09301 5.14975 5.21286 5.23299 5.35271 5.42308 5.66296 5.95718 5.99725 6.03290 6.16827 6.46886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.554 6.554 2 C -0.092 4.092 3 Si 0.756 3.244 4 C -0.025 4.025 5 C -0.141 4.141 6 C -0.020 4.020 7 C -0.677 4.677 8 S 2.709 3.291 9 O -0.980 6.980 10 O -0.987 6.987 11 N -1.101 6.101 12 C 0.146 3.854 13 H 0.092 0.908 14 C -0.117 4.117 15 C -0.106 4.106 16 C 0.086 3.914 17 H 0.088 0.912 18 N -0.535 5.535 19 C 0.012 3.988 20 C 0.058 3.942 21 O -0.410 6.410 22 C 0.060 3.940 23 C 0.017 3.983 24 C -0.147 4.147 25 C -0.132 4.132 26 C -0.024 4.024 27 C -0.122 4.122 28 H 0.398 0.602 29 H 0.105 0.895 30 H -0.293 1.293 31 H -0.283 1.283 32 H 0.153 0.847 33 H 0.157 0.843 34 H 0.429 0.571 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.042 0.958 40 H 0.102 0.898 41 H 0.060 0.940 42 H 0.107 0.893 43 H 0.060 0.940 44 H 0.105 0.895 45 H 0.095 0.905 46 H 0.038 0.962 47 H 0.067 0.933 48 H 0.059 0.941 49 H 0.078 0.922 50 H 0.063 0.937 51 H 0.150 0.850 52 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.696 1.524 1.161 2.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.364 6.364 2 C -0.201 4.201 3 Si 0.661 3.339 4 C -0.025 4.025 5 C -0.160 4.160 6 C -0.039 4.039 7 C -0.765 4.765 8 S 2.800 3.200 9 O -0.970 6.970 10 O -0.977 6.977 11 N -0.862 5.862 12 C 0.040 3.960 13 H 0.110 0.890 14 C -0.156 4.156 15 C -0.145 4.145 16 C -0.022 4.022 17 H 0.106 0.894 18 N -0.259 5.259 19 C -0.116 4.116 20 C -0.019 4.019 21 O -0.329 6.329 22 C -0.017 4.017 23 C -0.111 4.111 24 C -0.187 4.187 25 C -0.172 4.172 26 C -0.043 4.043 27 C -0.140 4.140 28 H 0.249 0.751 29 H 0.122 0.878 30 H -0.221 1.221 31 H -0.210 1.210 32 H 0.170 0.830 33 H 0.174 0.826 34 H 0.267 0.733 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.060 0.940 40 H 0.120 0.880 41 H 0.078 0.922 42 H 0.125 0.875 43 H 0.078 0.922 44 H 0.123 0.877 45 H 0.113 0.887 46 H 0.057 0.943 47 H 0.086 0.914 48 H 0.078 0.922 49 H 0.097 0.903 50 H 0.082 0.918 51 H 0.168 0.832 52 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.012 1.858 0.190 2.124 hybrid contribution -1.829 -0.228 1.783 2.565 sum -2.841 1.630 1.973 3.824 Atomic orbital electron populations 1.86524 1.17818 1.80808 1.51293 1.25089 0.84643 1.11941 0.98440 0.94120 0.90541 0.72205 0.77045 1.19872 0.94069 0.94214 0.94378 1.21308 0.99454 1.00801 0.94389 1.21071 0.94178 0.91782 0.96907 1.30834 1.15995 1.07611 1.22080 1.01197 0.73219 0.72378 0.73184 1.93571 1.46191 1.75678 1.81567 1.93569 1.86873 1.32298 1.84949 1.55344 1.60668 1.16147 1.54046 1.21016 0.98501 0.81268 0.95254 0.89013 1.21758 1.03416 0.97716 0.92745 1.21548 0.97294 0.95188 1.00473 1.21826 0.99494 0.89245 0.91619 0.89358 1.62479 1.03283 1.02570 1.57554 1.22895 0.94924 0.93848 0.99924 1.22814 0.87372 0.94217 0.97476 1.87972 1.18335 1.47696 1.78896 1.22775 0.88446 0.89674 1.00826 1.22788 0.94206 0.96940 0.97141 1.22152 1.01941 0.97175 0.97383 1.22029 0.99146 0.96225 0.99817 1.21119 0.91220 0.99930 0.92063 1.21318 1.00017 0.94479 0.98226 0.75056 0.87773 1.22056 1.20979 0.82992 0.82585 0.73327 0.90188 0.89828 0.91213 0.90236 0.94022 0.88007 0.92216 0.87505 0.92179 0.87660 0.88679 0.94338 0.91413 0.92194 0.90297 0.91825 0.83224 0.83894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.34 12.74 -148.98 -1.90 -1.56 16 2 C -0.09 0.28 2.81 71.24 0.20 0.48 16 3 Si 0.76 -2.85 29.79 68.60 2.04 -0.81 16 4 C -0.02 0.00 5.42 -19.86 -0.11 -0.11 16 5 C -0.14 0.13 8.67 22.27 0.19 0.32 16 6 C -0.02 0.00 8.58 22.27 0.19 0.19 16 7 C -0.68 -1.00 5.06 22.27 0.11 -0.89 16 8 S 2.71 8.13 5.72 -56.49 -0.32 7.81 16 9 O -0.98 -8.05 16.62 -128.00 -2.13 -10.17 16 10 O -0.99 -8.83 17.28 -128.00 -2.21 -11.04 16 11 N -1.10 3.61 5.47 -169.39 -0.93 2.68 16 12 C 0.15 -0.62 2.79 44.99 0.13 -0.49 16 13 H 0.09 -0.33 7.50 -2.38 -0.02 -0.35 16 14 C -0.12 0.71 5.45 30.59 0.17 0.87 16 15 C -0.11 0.56 5.01 30.60 0.15 0.71 16 16 C 0.09 -0.33 2.23 44.92 0.10 -0.23 16 17 H 0.09 -0.34 8.12 -2.39 -0.02 -0.36 16 18 N -0.54 0.71 4.72 -869.98 -4.10 -3.40 16 19 C 0.01 -0.02 4.86 86.31 0.42 0.40 16 20 C 0.06 0.01 7.01 72.01 0.50 0.52 16 21 O -0.41 -2.04 10.83 -148.98 -1.61 -3.65 16 22 C 0.06 0.03 7.01 72.02 0.50 0.54 16 23 C 0.02 -0.02 5.31 86.32 0.46 0.44 16 24 C -0.15 0.49 4.50 30.61 0.14 0.63 16 25 C -0.13 0.54 5.53 30.61 0.17 0.71 16 26 C -0.02 -0.03 9.52 22.27 0.21 0.18 16 27 C -0.12 -0.10 9.61 22.27 0.21 0.11 16 28 H 0.40 -3.31 8.74 -74.06 -0.65 -3.95 16 29 H 0.10 -0.73 7.96 -2.38 -0.02 -0.75 16 30 H -0.29 -0.91 7.11 99.48 0.71 -0.21 16 31 H -0.28 -0.15 7.11 99.48 0.71 0.56 16 32 H 0.15 -0.77 4.88 -2.91 -0.01 -0.79 16 33 H 0.16 -0.49 7.62 -2.91 -0.02 -0.52 16 34 H 0.43 -2.99 8.84 -96.75 -0.85 -3.85 16 35 H 0.08 -0.46 8.14 -2.39 -0.02 -0.48 16 36 H 0.08 -0.65 8.14 -2.38 -0.02 -0.67 16 37 H 0.07 -0.36 6.38 -2.39 -0.02 -0.37 16 38 H 0.08 -0.36 8.14 -2.39 -0.02 -0.38 16 39 H 0.04 -0.01 6.42 -2.38 -0.02 -0.03 16 40 H 0.10 -0.41 6.22 -2.38 -0.01 -0.42 16 41 H 0.06 0.00 8.14 -2.39 -0.02 -0.02 16 42 H 0.11 -0.24 8.14 -2.39 -0.02 -0.26 16 43 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.11 -0.19 8.14 -2.39 -0.02 -0.21 16 45 H 0.09 -0.29 8.13 -2.39 -0.02 -0.31 16 46 H 0.04 0.02 6.56 -2.39 -0.02 0.01 16 47 H 0.07 -0.18 6.43 -2.39 -0.02 -0.20 16 48 H 0.06 -0.08 6.57 -2.39 -0.02 -0.09 16 49 H 0.08 -0.38 8.14 -2.39 -0.02 -0.40 16 50 H 0.06 -0.15 6.17 -2.38 -0.01 -0.16 16 51 H 0.15 -0.14 7.62 -2.91 -0.02 -0.16 16 52 H 0.14 -0.20 8.06 -2.91 -0.02 -0.23 16 Total: 0.00 -22.42 404.12 -7.91 -30.33 By element: Atomic # 1 Polarization: -14.08 SS G_CDS: -0.51 Total: -14.58 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: 3.76 Total: 4.38 kcal Atomic # 7 Polarization: 4.31 SS G_CDS: -5.03 Total: -0.72 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -7.85 Total: -26.42 kcal Atomic # 14 Polarization: -2.85 SS G_CDS: 2.04 Total: -0.81 kcal Atomic # 16 Polarization: 8.13 SS G_CDS: -0.32 Total: 7.81 kcal Total: -22.42 -7.91 -30.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607746_13421422.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.361 kcal (2) G-P(sol) polarization free energy of solvation -22.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds