Wall clock time and date at job start Mon Mar 8 2021 10:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47041 * 2 1 4 4 C 1.50700 * 109.47283 * 119.99703 * 2 1 3 5 5 C 1.33391 * 122.53954 * 74.99713 * 4 2 1 6 6 S 1.76200 * 125.20087 * 0.02562 * 5 4 2 7 7 O 1.42103 * 106.40381 * 66.17373 * 6 5 4 8 8 O 1.42098 * 106.40224 * 293.25542 * 6 5 4 9 9 N 1.65600 * 107.21972 * 179.71689 * 6 5 4 10 10 C 1.46500 * 120.00050 * 64.99748 * 9 6 5 11 11 H 1.09000 * 109.47175 * 335.00128 * 10 9 6 12 12 C 1.52997 * 109.47204 * 95.00233 * 10 9 6 13 13 C 1.52999 * 109.47592 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46626 * 300.00035 * 13 12 10 15 15 H 1.09000 * 109.47050 * 299.99699 * 14 13 12 16 16 N 1.46902 * 109.46626 * 179.97438 * 14 13 12 17 17 C 1.47015 * 111.00120 * 298.63103 * 16 14 13 18 18 C 1.53099 * 109.26100 * 177.61044 * 17 16 14 19 19 O 1.43015 * 109.25514 * 56.84713 * 18 17 16 20 20 C 1.43010 * 113.74250 * 301.33457 * 19 18 17 21 21 C 1.47018 * 110.99572 * 175.00312 * 16 14 13 22 22 C 1.52997 * 109.47164 * 59.99702 * 14 13 12 23 23 C 1.52996 * 109.46993 * 215.00257 * 10 9 6 24 24 S 1.75877 * 109.59596 * 179.75170 * 5 4 2 25 25 C 1.75877 * 90.97155 * 0.23164 * 24 5 4 26 26 C 1.33394 * 109.59452 * 359.97438 * 25 24 5 27 27 H 0.96701 * 113.99860 * 300.00107 * 1 2 3 28 28 H 1.08997 * 109.47071 * 239.99776 * 2 1 3 29 29 H 1.48497 * 109.99811 * 299.99590 * 3 2 1 30 30 H 1.48494 * 109.99994 * 61.32128 * 3 2 1 31 31 H 0.97004 * 119.99756 * 244.99898 * 9 6 5 32 32 H 1.09000 * 109.47140 * 59.99873 * 12 10 9 33 33 H 1.09002 * 109.47045 * 299.99966 * 12 10 9 34 34 H 1.08993 * 109.47839 * 180.02562 * 13 12 10 35 35 H 1.09000 * 109.47160 * 59.99666 * 13 12 10 36 36 H 1.09005 * 109.50960 * 297.54676 * 17 16 14 37 37 H 1.09002 * 109.50487 * 57.67382 * 17 16 14 38 38 H 1.09001 * 109.50523 * 296.91910 * 18 17 16 39 39 H 1.08992 * 109.54492 * 176.80756 * 18 17 16 40 40 H 1.09000 * 109.50708 * 298.73292 * 20 19 18 41 41 H 1.09007 * 109.54451 * 178.62514 * 20 19 18 42 42 H 1.09004 * 109.50328 * 302.32303 * 21 16 14 43 43 H 1.08999 * 109.50924 * 62.40971 * 21 16 14 44 44 H 1.09000 * 109.47140 * 60.00051 * 22 14 13 45 45 H 1.09001 * 109.47230 * 179.97438 * 22 14 13 46 46 H 1.08992 * 109.47534 * 60.00265 * 23 10 9 47 47 H 1.08996 * 109.47134 * 299.99460 * 23 10 9 48 48 H 1.08002 * 125.20410 * 179.97438 * 25 24 5 49 49 H 1.07998 * 122.53941 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 1.2305 5 6 1.8961 -2.0377 1.3573 6 16 1.2762 -3.1576 0.1465 7 8 2.1520 -3.0678 -0.9690 8 8 -0.1219 -2.9194 0.0580 9 7 1.4522 -4.6868 0.7573 10 6 0.6992 -5.0916 1.9469 11 1 0.4466 -4.2091 2.5347 12 6 -0.5853 -5.8043 1.5194 13 6 -1.3722 -6.2265 2.7618 14 6 -0.5197 -7.1751 3.6072 15 1 -0.2671 -8.0578 3.0198 16 7 -1.2750 -7.5800 4.8004 17 6 -1.6052 -6.4157 5.6352 18 6 -2.4410 -6.8740 6.8332 19 8 -1.7180 -7.8725 7.5583 20 6 -1.3804 -9.0210 6.7758 21 6 -0.5339 -8.5844 5.5772 22 6 0.7648 -6.4623 4.0348 23 6 1.5518 -6.0402 2.7918 24 16 2.5702 -2.4996 2.9147 25 6 2.8644 -0.8139 3.3210 26 6 2.4616 -0.0346 2.3160 27 1 -0.3933 0.4417 0.7651 28 1 1.7923 -0.5139 -0.8899 29 1 1.5615 2.4678 -1.2085 30 1 1.5879 2.4585 1.2242 31 1 2.0540 -5.3145 0.3273 32 1 -0.3328 -6.6868 0.9316 33 1 -1.1928 -5.1285 0.9174 34 1 -2.2870 -6.7347 2.4573 35 1 -1.6247 -5.3438 3.3492 36 1 -0.6859 -5.9495 5.9897 37 1 -2.1755 -5.6964 5.0473 38 1 -3.3840 -7.2916 6.4807 39 1 -2.6405 -6.0237 7.4852 40 1 -2.2927 -9.5010 6.4216 41 1 -0.8126 -9.7237 7.3857 42 1 -0.3223 -9.4483 4.9470 43 1 0.4029 -8.1531 5.9301 44 1 0.5122 -5.5796 4.6222 45 1 1.3718 -7.1378 4.6374 46 1 2.4669 -5.5325 3.0965 47 1 1.8043 -6.9227 2.2041 48 1 3.3040 -0.4632 4.2430 49 1 2.5461 1.0416 2.3456 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16607746_13652106.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:27:36 Heat of formation + Delta-G solvation = -96.386621 kcal Electronic energy + Delta-G solvation = -33855.584372 eV Core-core repulsion = 29424.349885 eV Total energy + Delta-G solvation = -4431.234487 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.121 amu Computer time = 2.70 seconds Orbital eigenvalues (eV) -41.33447 -40.14762 -39.52099 -38.09850 -37.22038 -36.96866 -36.76944 -34.08618 -32.36826 -31.85425 -31.53648 -29.79956 -28.08727 -26.88981 -25.20376 -24.44295 -23.97960 -23.05038 -21.97571 -21.55839 -20.43100 -19.91035 -19.66309 -18.62115 -18.10679 -17.81643 -17.51747 -17.11291 -16.74173 -16.43189 -16.19847 -16.09407 -15.97044 -15.95806 -15.65522 -15.53265 -15.35495 -15.27011 -14.93536 -14.45251 -14.30703 -14.11378 -13.90504 -13.61850 -13.41499 -13.36825 -13.24175 -13.04394 -12.94865 -12.76559 -12.68866 -12.66540 -12.58665 -12.39388 -12.29360 -12.13717 -12.03869 -11.80823 -11.65238 -11.55045 -11.26456 -10.76447 -10.68915 -10.63362 -10.49366 -9.76576 -9.36577 -5.05960 -0.73819 -0.69025 0.13871 0.50652 1.10770 1.14454 1.47486 1.86287 1.88460 2.61697 2.64912 2.90451 3.21728 3.36667 3.39084 3.50289 3.60397 3.69103 3.83202 3.85604 3.88271 3.93774 3.96853 4.02465 4.07199 4.12772 4.18467 4.23032 4.26490 4.30462 4.35102 4.37876 4.50106 4.56575 4.57476 4.63143 4.66178 4.74958 4.75037 4.84974 4.88509 4.93420 4.93866 4.97605 4.99003 5.16759 5.21908 5.27919 5.78057 5.89196 5.91922 6.15778 6.30481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.507 6.507 2 C -0.106 4.106 3 Si 0.710 3.290 4 C 0.008 3.992 5 C -0.767 4.767 6 S 2.713 3.287 7 O -0.949 6.949 8 O -0.924 6.924 9 N -1.115 6.115 10 C 0.149 3.851 11 H 0.084 0.916 12 C -0.137 4.137 13 C -0.111 4.111 14 C 0.083 3.917 15 H 0.088 0.912 16 N -0.529 5.529 17 C 0.009 3.991 18 C 0.062 3.938 19 O -0.386 6.386 20 C 0.063 3.937 21 C 0.015 3.985 22 C -0.153 4.153 23 C -0.121 4.121 24 S 0.203 5.797 25 C -0.163 4.163 26 C -0.163 4.163 27 H 0.378 0.622 28 H 0.127 0.873 29 H -0.247 1.247 30 H -0.253 1.253 31 H 0.422 0.578 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.048 0.952 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.097 0.903 40 H 0.060 0.940 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.047 0.953 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.179 0.821 49 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.749 -0.567 4.309 5.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.314 6.314 2 C -0.217 4.217 3 Si 0.609 3.391 4 C -0.010 4.010 5 C -0.966 4.966 6 S 2.797 3.203 7 O -0.939 6.939 8 O -0.914 6.914 9 N -0.876 5.876 10 C 0.043 3.957 11 H 0.101 0.899 12 C -0.176 4.176 13 C -0.149 4.149 14 C -0.025 4.025 15 H 0.106 0.894 16 N -0.253 5.253 17 C -0.119 4.119 18 C -0.015 4.015 19 O -0.304 6.304 20 C -0.015 4.015 21 C -0.113 4.113 22 C -0.193 4.193 23 C -0.161 4.161 24 S 0.469 5.531 25 C -0.300 4.300 26 C -0.193 4.193 27 H 0.226 0.774 28 H 0.145 0.855 29 H -0.172 1.172 30 H -0.177 1.177 31 H 0.257 0.743 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.116 0.884 40 H 0.078 0.922 41 H 0.116 0.884 42 H 0.104 0.896 43 H 0.065 0.935 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.095 0.905 48 H 0.196 0.804 49 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.018 -1.264 3.892 5.085 hybrid contribution 0.201 1.407 0.411 1.480 sum 3.219 0.143 4.303 5.376 Atomic orbital electron populations 1.86789 1.15570 1.79971 1.49023 1.25351 0.85594 1.13500 0.97250 0.94582 0.91106 0.72495 0.80928 1.18978 0.94096 0.91307 0.96580 1.35778 1.25826 1.14474 1.20542 1.01699 0.74408 0.71758 0.72416 1.93628 1.67606 1.85743 1.46930 1.93660 1.29215 1.84012 1.84465 1.55726 1.58507 1.30874 1.42477 1.20955 0.91622 0.98556 0.84615 0.89851 1.22068 0.95720 1.01513 0.98337 1.21584 0.98813 0.99006 0.95511 1.21844 0.91191 0.98173 0.91332 0.89383 1.62452 1.43973 1.11824 1.07050 1.22912 1.00135 0.93557 0.95269 1.22686 0.94296 0.91760 0.92758 1.88007 1.75601 1.29429 1.37370 1.22674 0.98855 0.88064 0.91859 1.22822 0.96124 0.96433 0.95947 1.22241 0.97757 1.01458 0.97799 1.21806 0.98303 0.99604 0.96342 1.84086 1.56079 1.06105 1.06795 1.26150 1.03591 0.96771 1.03527 1.20343 1.03510 1.02112 0.93321 0.77373 0.85509 1.17158 1.17744 0.74255 0.90718 0.89689 0.90182 0.91475 0.93429 0.89160 0.92181 0.88448 0.92181 0.88405 0.89556 0.93513 0.91153 0.90988 0.90929 0.90493 0.80375 0.82592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.51 -1.43 12.32 -35.88 -0.44 -1.87 16 2 C -0.11 -0.16 2.33 36.01 0.08 -0.08 16 3 Si 0.71 -0.62 30.47 -169.99 -5.18 -5.80 16 4 C 0.01 0.01 5.13 -106.25 -0.55 -0.54 16 5 C -0.77 -1.05 6.33 29.04 0.18 -0.87 16 6 S 2.71 7.33 4.99 -107.50 -0.54 6.79 16 7 O -0.95 -5.02 17.48 -57.17 -1.00 -6.02 16 8 O -0.92 -4.98 16.72 -59.41 -0.99 -5.98 16 9 N -1.12 0.95 5.29 -4.89 -0.03 0.93 16 10 C 0.15 -0.23 2.06 -67.93 -0.14 -0.37 16 11 H 0.08 -0.12 6.89 -51.93 -0.36 -0.48 16 12 C -0.14 0.14 5.53 -26.73 -0.15 -0.01 16 13 C -0.11 0.16 5.01 -26.73 -0.13 0.02 16 14 C 0.08 -0.15 2.23 -67.71 -0.15 -0.30 16 15 H 0.09 -0.16 8.12 -51.93 -0.42 -0.58 16 16 N -0.53 0.41 4.72 -226.32 -1.07 -0.66 16 17 C 0.01 -0.01 4.86 -3.71 -0.02 -0.03 16 18 C 0.06 -0.01 7.01 37.21 0.26 0.25 16 19 O -0.39 -0.72 10.83 -35.23 -0.38 -1.11 16 20 C 0.06 -0.02 7.01 37.21 0.26 0.24 16 21 C 0.01 -0.02 5.31 -3.71 -0.02 -0.04 16 22 C -0.15 0.39 4.50 -26.71 -0.12 0.27 16 23 C -0.12 0.37 5.45 -26.71 -0.15 0.22 16 24 S 0.20 -0.27 21.57 -107.50 -2.32 -2.59 16 25 C -0.16 0.33 11.23 29.04 0.33 0.65 16 26 C -0.16 0.17 8.74 -41.21 -0.36 -0.19 16 27 H 0.38 -0.31 8.70 45.56 0.40 0.08 16 28 H 0.13 0.26 7.23 -51.93 -0.38 -0.11 16 29 H -0.25 -0.53 7.11 56.52 0.40 -0.12 16 30 H -0.25 0.07 6.80 56.52 0.38 0.46 16 31 H 0.42 -1.21 8.84 -34.47 -0.30 -1.52 16 32 H 0.07 -0.13 8.14 -51.93 -0.42 -0.55 16 33 H 0.08 0.06 7.64 -51.93 -0.40 -0.33 16 34 H 0.08 -0.07 8.14 -51.93 -0.42 -0.49 16 35 H 0.07 -0.09 6.38 -51.93 -0.33 -0.42 16 36 H 0.05 -0.04 6.42 -51.93 -0.33 -0.37 16 37 H 0.09 -0.14 6.22 -51.93 -0.32 -0.47 16 38 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 39 H 0.10 -0.13 8.14 -51.93 -0.42 -0.56 16 40 H 0.06 -0.01 8.14 -51.93 -0.42 -0.44 16 41 H 0.10 -0.15 8.14 -51.93 -0.42 -0.58 16 42 H 0.09 -0.17 8.13 -51.93 -0.42 -0.59 16 43 H 0.05 -0.04 6.56 -51.93 -0.34 -0.38 16 44 H 0.07 -0.16 6.43 -51.93 -0.33 -0.49 16 45 H 0.07 -0.17 6.57 -51.93 -0.34 -0.51 16 46 H 0.07 -0.25 8.14 -51.93 -0.42 -0.68 16 47 H 0.08 -0.28 8.14 -51.93 -0.42 -0.70 16 48 H 0.18 -0.85 8.06 -52.49 -0.42 -1.27 16 49 H 0.16 -0.45 5.54 -52.49 -0.29 -0.74 16 LS Contribution 393.86 15.07 5.94 5.94 Total: 0.00 -9.53 393.86 -13.87 -23.40 By element: Atomic # 1 Polarization: -5.09 SS G_CDS: -7.20 Total: -12.28 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -0.67 Total: -0.75 kcal Atomic # 7 Polarization: 1.37 SS G_CDS: -1.09 Total: 0.27 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: -2.82 Total: -14.97 kcal Atomic # 14 Polarization: -0.62 SS G_CDS: -5.18 Total: -5.80 kcal Atomic # 16 Polarization: 7.06 SS G_CDS: -2.86 Total: 4.21 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -9.53 -13.87 -23.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607746_13652106.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.990 kcal (2) G-P(sol) polarization free energy of solvation -9.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.70 seconds