Wall clock time and date at job start Mon Mar 8 2021 10:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47041 * 2 1 4 4 C 1.50700 * 109.47283 * 119.99703 * 2 1 3 5 5 C 1.33391 * 122.53954 * 74.99713 * 4 2 1 6 6 S 1.76200 * 125.20087 * 0.02562 * 5 4 2 7 7 O 1.42103 * 106.40381 * 66.17373 * 6 5 4 8 8 O 1.42098 * 106.40224 * 293.25542 * 6 5 4 9 9 N 1.65600 * 107.21972 * 179.71689 * 6 5 4 10 10 C 1.46500 * 120.00050 * 64.99748 * 9 6 5 11 11 H 1.09000 * 109.47175 * 335.00128 * 10 9 6 12 12 C 1.52997 * 109.47204 * 95.00233 * 10 9 6 13 13 C 1.52999 * 109.47592 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46626 * 300.00035 * 13 12 10 15 15 H 1.09000 * 109.47050 * 299.99699 * 14 13 12 16 16 N 1.46902 * 109.46626 * 179.97438 * 14 13 12 17 17 C 1.47015 * 111.00120 * 298.63103 * 16 14 13 18 18 C 1.53099 * 109.26100 * 177.61044 * 17 16 14 19 19 O 1.43015 * 109.25514 * 56.84713 * 18 17 16 20 20 C 1.43010 * 113.74250 * 301.33457 * 19 18 17 21 21 C 1.47018 * 110.99572 * 175.00312 * 16 14 13 22 22 C 1.52997 * 109.47164 * 59.99702 * 14 13 12 23 23 C 1.52996 * 109.46993 * 215.00257 * 10 9 6 24 24 S 1.75877 * 109.59596 * 179.75170 * 5 4 2 25 25 C 1.75877 * 90.97155 * 0.23164 * 24 5 4 26 26 C 1.33394 * 109.59452 * 359.97438 * 25 24 5 27 27 H 0.96701 * 113.99860 * 300.00107 * 1 2 3 28 28 H 1.08997 * 109.47071 * 239.99776 * 2 1 3 29 29 H 1.48497 * 109.99811 * 299.99590 * 3 2 1 30 30 H 1.48494 * 109.99994 * 61.32128 * 3 2 1 31 31 H 0.97004 * 119.99756 * 244.99898 * 9 6 5 32 32 H 1.09000 * 109.47140 * 59.99873 * 12 10 9 33 33 H 1.09002 * 109.47045 * 299.99966 * 12 10 9 34 34 H 1.08993 * 109.47839 * 180.02562 * 13 12 10 35 35 H 1.09000 * 109.47160 * 59.99666 * 13 12 10 36 36 H 1.09005 * 109.50960 * 297.54676 * 17 16 14 37 37 H 1.09002 * 109.50487 * 57.67382 * 17 16 14 38 38 H 1.09001 * 109.50523 * 296.91910 * 18 17 16 39 39 H 1.08992 * 109.54492 * 176.80756 * 18 17 16 40 40 H 1.09000 * 109.50708 * 298.73292 * 20 19 18 41 41 H 1.09007 * 109.54451 * 178.62514 * 20 19 18 42 42 H 1.09004 * 109.50328 * 302.32303 * 21 16 14 43 43 H 1.08999 * 109.50924 * 62.40971 * 21 16 14 44 44 H 1.09000 * 109.47140 * 60.00051 * 22 14 13 45 45 H 1.09001 * 109.47230 * 179.97438 * 22 14 13 46 46 H 1.08992 * 109.47534 * 60.00265 * 23 10 9 47 47 H 1.08996 * 109.47134 * 299.99460 * 23 10 9 48 48 H 1.08002 * 125.20410 * 179.97438 * 25 24 5 49 49 H 1.07998 * 122.53941 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 1.2305 5 6 1.8961 -2.0377 1.3573 6 16 1.2762 -3.1576 0.1465 7 8 2.1520 -3.0678 -0.9690 8 8 -0.1219 -2.9194 0.0580 9 7 1.4522 -4.6868 0.7573 10 6 0.6992 -5.0916 1.9469 11 1 0.4466 -4.2091 2.5347 12 6 -0.5853 -5.8043 1.5194 13 6 -1.3722 -6.2265 2.7618 14 6 -0.5197 -7.1751 3.6072 15 1 -0.2671 -8.0578 3.0198 16 7 -1.2750 -7.5800 4.8004 17 6 -1.6052 -6.4157 5.6352 18 6 -2.4410 -6.8740 6.8332 19 8 -1.7180 -7.8725 7.5583 20 6 -1.3804 -9.0210 6.7758 21 6 -0.5339 -8.5844 5.5772 22 6 0.7648 -6.4623 4.0348 23 6 1.5518 -6.0402 2.7918 24 16 2.5702 -2.4996 2.9147 25 6 2.8644 -0.8139 3.3210 26 6 2.4616 -0.0346 2.3160 27 1 -0.3933 0.4417 0.7651 28 1 1.7923 -0.5139 -0.8899 29 1 1.5615 2.4678 -1.2085 30 1 1.5879 2.4585 1.2242 31 1 2.0540 -5.3145 0.3273 32 1 -0.3328 -6.6868 0.9316 33 1 -1.1928 -5.1285 0.9174 34 1 -2.2870 -6.7347 2.4573 35 1 -1.6247 -5.3438 3.3492 36 1 -0.6859 -5.9495 5.9897 37 1 -2.1755 -5.6964 5.0473 38 1 -3.3840 -7.2916 6.4807 39 1 -2.6405 -6.0237 7.4852 40 1 -2.2927 -9.5010 6.4216 41 1 -0.8126 -9.7237 7.3857 42 1 -0.3223 -9.4483 4.9470 43 1 0.4029 -8.1531 5.9301 44 1 0.5122 -5.5796 4.6222 45 1 1.3718 -7.1378 4.6374 46 1 2.4669 -5.5325 3.0965 47 1 1.8043 -6.9227 2.2041 48 1 3.3040 -0.4632 4.2430 49 1 2.5461 1.0416 2.3456 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607746_13652106.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:27:35 Heat of formation + Delta-G solvation = -101.341279 kcal Electronic energy + Delta-G solvation = -33855.799222 eV Core-core repulsion = 29424.349885 eV Total energy + Delta-G solvation = -4431.449337 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.121 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.24436 -40.12744 -39.47816 -38.38011 -37.30089 -37.07339 -36.92440 -34.05199 -32.27591 -31.73842 -31.47140 -29.73848 -28.13410 -26.82760 -25.13540 -24.38965 -23.85162 -22.95141 -21.95355 -21.54503 -20.35401 -19.96749 -19.66337 -18.73276 -18.12557 -17.77307 -17.53862 -17.11398 -16.79078 -16.52295 -16.16024 -16.06697 -16.01113 -15.94605 -15.60975 -15.41565 -15.31605 -15.20370 -14.86311 -14.39736 -14.25412 -14.07010 -13.88449 -13.63759 -13.43296 -13.39440 -13.30738 -13.23417 -13.10381 -12.80494 -12.65102 -12.59041 -12.50902 -12.39014 -12.34252 -12.06180 -11.89729 -11.72617 -11.62773 -11.46921 -11.18264 -10.82082 -10.66189 -10.60190 -10.43367 -9.65744 -9.26138 -4.99803 -0.84478 -0.69641 0.18557 0.62977 1.12450 1.22887 1.51401 1.81813 1.88767 2.46196 2.73770 2.97041 3.18104 3.41280 3.45294 3.51692 3.66393 3.79031 3.93805 3.96923 3.97496 4.02731 4.07011 4.14464 4.16150 4.21170 4.27160 4.28114 4.33537 4.41716 4.46424 4.49026 4.61961 4.67574 4.69087 4.74048 4.77297 4.83116 4.86143 4.97073 4.98467 5.05071 5.08187 5.09934 5.13302 5.21700 5.32631 5.39990 5.90475 5.98751 6.04031 6.18995 6.34771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.534 6.534 2 C -0.134 4.134 3 Si 0.800 3.200 4 C 0.002 3.998 5 C -0.796 4.796 6 S 2.720 3.280 7 O -0.986 6.986 8 O -0.962 6.962 9 N -1.103 6.103 10 C 0.147 3.853 11 H 0.083 0.917 12 C -0.137 4.137 13 C -0.106 4.106 14 C 0.086 3.914 15 H 0.091 0.909 16 N -0.539 5.539 17 C 0.012 3.988 18 C 0.058 3.942 19 O -0.408 6.408 20 C 0.058 3.942 21 C 0.018 3.982 22 C -0.147 4.147 23 C -0.116 4.116 24 S 0.232 5.768 25 C -0.151 4.151 26 C -0.175 4.175 27 H 0.390 0.610 28 H 0.109 0.891 29 H -0.295 1.295 30 H -0.248 1.248 31 H 0.432 0.568 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.048 0.952 37 H 0.094 0.906 38 H 0.055 0.945 39 H 0.107 0.893 40 H 0.056 0.944 41 H 0.108 0.892 42 H 0.096 0.904 43 H 0.047 0.953 44 H 0.069 0.931 45 H 0.076 0.924 46 H 0.083 0.917 47 H 0.087 0.913 48 H 0.212 0.788 49 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.302 -0.393 6.275 8.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.342 6.342 2 C -0.242 4.242 3 Si 0.700 3.300 4 C -0.016 4.016 5 C -0.999 4.999 6 S 2.808 3.192 7 O -0.976 6.976 8 O -0.952 6.952 9 N -0.867 5.867 10 C 0.041 3.959 11 H 0.101 0.899 12 C -0.176 4.176 13 C -0.144 4.144 14 C -0.022 4.022 15 H 0.109 0.891 16 N -0.263 5.263 17 C -0.115 4.115 18 C -0.018 4.018 19 O -0.327 6.327 20 C -0.019 4.019 21 C -0.110 4.110 22 C -0.187 4.187 23 C -0.155 4.155 24 S 0.498 5.502 25 C -0.288 4.288 26 C -0.204 4.204 27 H 0.240 0.760 28 H 0.127 0.873 29 H -0.223 1.223 30 H -0.173 1.173 31 H 0.270 0.730 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.113 0.887 38 H 0.074 0.926 39 H 0.125 0.875 40 H 0.074 0.926 41 H 0.126 0.874 42 H 0.114 0.886 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.095 0.905 46 H 0.101 0.899 47 H 0.106 0.894 48 H 0.229 0.771 49 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 4.563 -1.148 5.851 7.508 hybrid contribution -0.320 1.299 -0.175 1.350 sum 4.243 0.151 5.676 7.088 Atomic orbital electron populations 1.86742 1.16719 1.80740 1.50044 1.25804 0.85109 1.16117 0.97196 0.93582 0.89535 0.68670 0.78224 1.19130 0.94188 0.91369 0.96957 1.35493 1.27845 1.14528 1.22000 1.00974 0.73366 0.72448 0.72437 1.93570 1.68069 1.86544 1.49392 1.93610 1.31309 1.84877 1.85378 1.55423 1.58762 1.29736 1.42771 1.21072 0.91597 0.98906 0.84341 0.89945 1.22042 0.95806 1.01373 0.98412 1.21519 0.98563 0.99035 0.95331 1.21812 0.91314 0.98178 0.90885 0.89073 1.62445 1.44489 1.12026 1.07361 1.22874 1.00061 0.93596 0.95012 1.22787 0.94098 0.91748 0.93207 1.87969 1.75904 1.30254 1.38590 1.22797 0.99020 0.87739 0.92298 1.22803 0.95786 0.96676 0.95714 1.22186 0.97293 1.01358 0.97862 1.21793 0.98180 0.99632 0.95916 1.83917 1.54978 1.06742 1.04544 1.26633 1.01931 0.96037 1.04209 1.20487 1.03851 1.03236 0.92782 0.75972 0.87344 1.22264 1.17318 0.73029 0.89944 0.91918 0.90949 0.91598 0.93378 0.88742 0.92634 0.87533 0.92603 0.87355 0.88567 0.93461 0.91273 0.90521 0.89859 0.89426 0.77067 0.80564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -4.19 12.32 -148.36 -1.83 -6.01 16 2 C -0.13 -0.62 2.33 71.24 0.17 -0.45 16 3 Si 0.80 -1.34 30.47 68.60 2.09 0.75 16 4 C 0.00 0.00 5.13 -20.92 -0.11 -0.10 16 5 C -0.80 -2.73 6.33 66.72 0.42 -2.31 16 6 S 2.72 20.24 4.99 -56.49 -0.28 19.96 16 7 O -0.99 -13.02 17.48 -128.00 -2.24 -15.25 16 8 O -0.96 -13.16 16.72 -125.86 -2.10 -15.27 16 9 N -1.10 0.94 5.29 -169.40 -0.90 0.05 16 10 C 0.15 -0.43 2.06 44.99 0.09 -0.34 16 11 H 0.08 -0.22 6.89 -2.39 -0.02 -0.23 16 12 C -0.14 0.16 5.53 30.59 0.17 0.33 16 13 C -0.11 0.25 5.01 30.60 0.15 0.40 16 14 C 0.09 -0.36 2.23 44.92 0.10 -0.25 16 15 H 0.09 -0.41 8.12 -2.39 -0.02 -0.43 16 16 N -0.54 0.99 4.72 -869.93 -4.10 -3.11 16 17 C 0.01 -0.02 4.86 86.31 0.42 0.39 16 18 C 0.06 0.00 7.01 72.02 0.50 0.50 16 19 O -0.41 -1.59 10.83 -148.98 -1.61 -3.20 16 20 C 0.06 -0.04 7.01 72.01 0.50 0.47 16 21 C 0.02 -0.05 5.31 86.31 0.46 0.41 16 22 C -0.15 0.92 4.50 30.61 0.14 1.06 16 23 C -0.12 0.83 5.45 30.61 0.17 1.00 16 24 S 0.23 -0.89 21.57 -56.49 -1.22 -2.11 16 25 C -0.15 0.97 11.23 66.72 0.75 1.72 16 26 C -0.17 0.63 8.74 21.22 0.19 0.82 16 27 H 0.39 -0.01 8.70 -74.06 -0.64 -0.66 16 28 H 0.11 0.79 7.23 -2.39 -0.02 0.77 16 29 H -0.30 -1.76 7.11 99.48 0.71 -1.05 16 30 H -0.25 0.59 6.80 99.48 0.68 1.27 16 31 H 0.43 -2.24 8.84 -96.74 -0.85 -3.09 16 32 H 0.08 -0.24 8.14 -2.39 -0.02 -0.26 16 33 H 0.06 0.23 7.64 -2.39 -0.02 0.21 16 34 H 0.07 -0.05 8.14 -2.39 -0.02 -0.07 16 35 H 0.07 -0.14 6.38 -2.39 -0.02 -0.16 16 36 H 0.05 -0.10 6.42 -2.38 -0.02 -0.11 16 37 H 0.09 -0.29 6.22 -2.39 -0.01 -0.31 16 38 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.11 -0.28 8.14 -2.39 -0.02 -0.30 16 40 H 0.06 -0.01 8.14 -2.39 -0.02 -0.03 16 41 H 0.11 -0.37 8.14 -2.38 -0.02 -0.39 16 42 H 0.10 -0.47 8.13 -2.38 -0.02 -0.49 16 43 H 0.05 -0.13 6.56 -2.39 -0.02 -0.15 16 44 H 0.07 -0.39 6.43 -2.39 -0.02 -0.40 16 45 H 0.08 -0.49 6.57 -2.39 -0.02 -0.51 16 46 H 0.08 -0.73 8.14 -2.39 -0.02 -0.75 16 47 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 48 H 0.21 -2.85 8.06 -2.91 -0.02 -2.88 16 49 H 0.18 -1.45 5.54 -2.91 -0.02 -1.47 16 Total: 0.00 -24.27 393.86 -8.56 -32.83 By element: Atomic # 1 Polarization: -11.78 SS G_CDS: -0.49 Total: -12.27 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 4.12 Total: 3.64 kcal Atomic # 7 Polarization: 1.93 SS G_CDS: -5.00 Total: -3.07 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -7.78 Total: -39.74 kcal Atomic # 14 Polarization: -1.34 SS G_CDS: 2.09 Total: 0.75 kcal Atomic # 16 Polarization: 19.35 SS G_CDS: -1.50 Total: 17.85 kcal Total: -24.27 -8.56 -32.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607746_13652106.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.510 kcal (2) G-P(sol) polarization free energy of solvation -24.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds