Wall clock time and date at job start Mon Mar 8 2021 10:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86302 * 109.47073 * 2 1 4 4 C 1.50695 * 109.47165 * 239.99962 * 2 1 3 5 5 C 1.33391 * 125.19962 * 317.11142 * 4 2 1 6 6 S 1.76197 * 122.54143 * 0.02562 * 5 4 2 7 7 O 1.42099 * 106.40119 * 180.78473 * 6 5 4 8 8 O 1.42099 * 106.40108 * 313.70412 * 6 5 4 9 9 N 1.65593 * 107.22198 * 67.24375 * 6 5 4 10 10 C 1.46501 * 119.99786 * 64.51007 * 9 6 5 11 11 H 1.08999 * 109.47604 * 335.62862 * 10 9 6 12 12 C 1.53001 * 109.47158 * 95.63019 * 10 9 6 13 13 C 1.53003 * 109.47182 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.47219 * 300.00402 * 13 12 10 15 15 H 1.08997 * 109.46454 * 299.99556 * 14 13 12 16 16 N 1.46897 * 109.46860 * 180.02562 * 14 13 12 17 17 C 1.47015 * 110.99908 * 183.63471 * 16 14 13 18 18 C 1.53094 * 109.26185 * 177.60717 * 17 16 14 19 19 O 1.43018 * 109.26180 * 56.84163 * 18 17 16 20 20 C 1.43014 * 113.73629 * 301.33628 * 19 18 17 21 21 C 1.47006 * 111.00487 * 59.99407 * 16 14 13 22 22 C 1.52994 * 109.47432 * 59.99945 * 14 13 12 23 23 C 1.53004 * 109.47297 * 215.62826 * 10 9 6 24 24 C 1.38428 * 114.91693 * 179.97438 * 5 4 2 25 25 C 1.33388 * 114.92144 * 0.02562 * 24 5 4 26 26 S 1.75879 * 109.59432 * 359.75674 * 25 24 5 27 27 H 0.96708 * 113.99714 * 300.00242 * 1 2 3 28 28 H 1.09001 * 109.47050 * 119.99124 * 2 1 3 29 29 H 1.48503 * 110.00334 * 178.68391 * 3 2 1 30 30 H 1.48504 * 109.99687 * 300.00031 * 3 2 1 31 31 H 0.96996 * 120.00787 * 244.51374 * 9 6 5 32 32 H 1.08991 * 109.46913 * 299.99933 * 12 10 9 33 33 H 1.08993 * 109.47125 * 60.00373 * 12 10 9 34 34 H 1.08992 * 109.47331 * 179.97438 * 13 12 10 35 35 H 1.09002 * 109.46757 * 59.99984 * 13 12 10 36 36 H 1.09002 * 109.50235 * 297.54100 * 17 16 14 37 37 H 1.09004 * 109.50623 * 57.66503 * 17 16 14 38 38 H 1.09009 * 109.50152 * 296.90875 * 18 17 16 39 39 H 1.08993 * 109.50938 * 176.78041 * 18 17 16 40 40 H 1.09001 * 109.50804 * 298.73075 * 20 19 18 41 41 H 1.09007 * 109.53944 * 178.62372 * 20 19 18 42 42 H 1.09000 * 109.51308 * 302.32849 * 21 16 14 43 43 H 1.09006 * 109.50455 * 62.45921 * 21 16 14 44 44 H 1.08993 * 109.47397 * 180.02562 * 22 14 13 45 45 H 1.08993 * 109.47284 * 59.99659 * 22 14 13 46 46 H 1.08994 * 109.47534 * 300.00490 * 23 10 9 47 47 H 1.09006 * 109.46751 * 59.99956 * 23 10 9 48 48 H 1.08007 * 122.53318 * 180.02562 * 24 5 4 49 49 H 1.08000 * 125.19725 * 180.02562 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.4347 -1.8484 -1.7178 6 16 0.0853 -2.6937 -0.9633 7 8 -0.1459 -3.8581 -1.7442 8 8 0.3658 -2.7348 0.4292 9 7 -1.2543 -1.7369 -1.1423 10 6 -1.7805 -1.4564 -2.4805 11 1 -0.9825 -1.5650 -3.2149 12 6 -2.9070 -2.4405 -2.8021 13 6 -3.4570 -2.1471 -4.1994 14 6 -4.0004 -0.7175 -4.2439 15 1 -4.7984 -0.6092 -3.5093 16 7 -4.5290 -0.4361 -5.5853 17 6 -4.9821 0.9585 -5.6911 18 6 -5.4684 1.2245 -7.1182 19 8 -6.5028 0.2928 -7.4456 20 6 -6.0958 -1.0751 -7.3535 21 6 -5.6159 -1.3645 -5.9288 22 6 -2.8740 0.2666 -3.9223 23 6 -2.3239 -0.0268 -2.5255 24 6 2.0590 -2.3144 -2.8621 25 6 3.0630 -1.5551 -3.3035 26 16 3.2577 -0.1624 -2.2472 27 1 -0.3933 0.4418 0.7651 28 1 1.7923 -0.5137 0.8901 29 1 3.5346 1.7704 0.0321 30 1 1.5614 2.4679 -1.2085 31 1 -1.6907 -1.3622 -0.3613 32 1 -2.5200 -3.4589 -2.7701 33 1 -3.7051 -2.3318 -2.0678 34 1 -4.2592 -2.8484 -4.4288 35 1 -2.6591 -2.2555 -4.9341 36 1 -5.7992 1.1298 -4.9903 37 1 -4.1548 1.6287 -5.4575 38 1 -4.6377 1.1054 -7.8139 39 1 -5.8583 2.2400 -7.1865 40 1 -5.2834 -1.2612 -8.0560 41 1 -6.9390 -1.7233 -7.5923 42 1 -5.2513 -2.3900 -5.8688 43 1 -6.4431 -1.2302 -5.2318 44 1 -3.2612 1.2849 -3.9535 45 1 -2.0761 0.1582 -4.6568 46 1 -3.1220 0.0819 -1.7911 47 1 -1.5213 0.6743 -2.2963 48 1 1.7561 -3.2239 -3.3597 49 1 3.6615 -1.7615 -4.1784 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16607746_14772022.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:27:42 Heat of formation + Delta-G solvation = -93.448151 kcal Electronic energy + Delta-G solvation = -34259.061614 eV Core-core repulsion = 29827.954549 eV Total energy + Delta-G solvation = -4431.107065 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.121 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -41.06591 -39.62364 -39.39558 -38.20563 -37.47977 -36.72660 -36.63722 -33.94601 -32.64725 -32.02078 -31.46264 -29.66937 -27.52017 -26.79918 -25.38750 -24.32801 -23.10684 -22.87089 -21.80943 -21.36732 -20.95836 -19.82185 -19.01103 -18.62214 -18.16226 -18.00971 -17.75557 -17.10895 -17.03327 -16.30474 -16.04712 -15.97745 -15.95294 -15.71072 -15.43155 -15.23331 -15.07924 -15.03224 -14.62761 -14.51140 -14.32316 -14.05320 -13.84408 -13.73447 -13.61149 -13.24292 -12.98373 -12.96367 -12.88773 -12.80654 -12.61625 -12.47267 -12.37420 -12.31225 -12.20315 -12.15214 -12.09556 -11.78301 -11.47676 -11.40589 -11.16345 -10.87931 -10.60902 -10.25049 -10.13147 -9.80795 -9.39716 -5.40877 -0.60648 -0.40842 0.27820 0.61996 0.92742 1.12811 1.38599 1.69365 2.18081 2.66514 2.79619 2.93685 3.02526 3.45207 3.56612 3.57753 3.63787 3.88574 3.93831 3.98853 4.03266 4.10415 4.11989 4.18367 4.18776 4.24141 4.27592 4.32496 4.34088 4.42954 4.46969 4.49543 4.55229 4.66348 4.68251 4.76188 4.78787 4.80758 4.87069 4.92155 5.02333 5.04486 5.10923 5.11871 5.16066 5.20074 5.32285 5.44943 5.94148 5.99400 6.19090 6.20249 6.23678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.068 4.068 3 Si 0.687 3.313 4 C -0.052 4.052 5 C -0.662 4.662 6 S 2.720 3.280 7 O -0.961 6.961 8 O -0.956 6.956 9 N -1.085 6.085 10 C 0.161 3.839 11 H 0.080 0.920 12 C -0.137 4.137 13 C -0.112 4.112 14 C 0.084 3.916 15 H 0.044 0.956 16 N -0.533 5.533 17 C 0.014 3.986 18 C 0.063 3.937 19 O -0.386 6.386 20 C 0.063 3.937 21 C 0.014 3.986 22 C -0.114 4.114 23 C -0.117 4.117 24 C -0.076 4.076 25 C -0.209 4.209 26 S 0.132 5.868 27 H 0.395 0.605 28 H 0.110 0.890 29 H -0.237 1.237 30 H -0.236 1.236 31 H 0.420 0.580 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.042 0.958 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.098 0.902 40 H 0.060 0.940 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.043 0.957 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.161 0.839 49 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.086 5.203 1.732 5.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.180 4.180 3 Si 0.585 3.415 4 C -0.172 4.172 5 C -0.761 4.761 6 S 2.806 3.194 7 O -0.951 6.951 8 O -0.946 6.946 9 N -0.846 5.846 10 C 0.053 3.947 11 H 0.098 0.902 12 C -0.177 4.177 13 C -0.150 4.150 14 C -0.024 4.024 15 H 0.062 0.938 16 N -0.259 5.259 17 C -0.114 4.114 18 C -0.014 4.014 19 O -0.304 6.304 20 C -0.014 4.014 21 C -0.114 4.114 22 C -0.153 4.153 23 C -0.157 4.157 24 C -0.104 4.104 25 C -0.344 4.344 26 S 0.395 5.605 27 H 0.245 0.755 28 H 0.127 0.873 29 H -0.161 1.161 30 H -0.159 1.159 31 H 0.257 0.743 32 H 0.100 0.900 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.116 0.884 40 H 0.078 0.922 41 H 0.116 0.884 42 H 0.109 0.891 43 H 0.061 0.939 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.088 0.912 47 H 0.096 0.904 48 H 0.178 0.822 49 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.851 5.840 0.577 6.154 hybrid contribution -0.917 -0.964 0.396 1.388 sum 0.935 4.876 0.973 5.060 Atomic orbital electron populations 1.86382 1.16066 1.82075 1.50595 1.24447 0.86736 1.11101 0.95684 0.94467 0.82070 0.77078 0.87912 1.23669 0.98846 0.96023 0.98677 1.30030 1.24903 1.09997 1.11153 1.01254 0.72422 0.72682 0.73073 1.93587 1.84659 1.44512 1.72346 1.93559 1.84406 1.86303 1.30322 1.55341 1.44620 1.70703 1.13905 1.20702 0.96262 0.95151 0.82565 0.90233 1.22091 0.98348 1.00450 0.96823 1.21596 1.01196 0.95036 0.97171 1.21716 0.96264 0.95939 0.88454 0.93812 1.62237 1.33117 1.02894 1.27620 1.22855 0.99895 0.90618 0.98029 1.22676 0.91118 0.93344 0.94280 1.88008 1.37337 1.15606 1.89490 1.22681 1.00371 0.83190 0.95171 1.22854 0.92965 0.98008 0.97559 1.21634 0.98074 0.98677 0.96875 1.21764 1.01161 0.95726 0.97036 1.19817 0.95156 1.01260 0.94197 1.25908 1.04428 0.98981 1.05121 1.84472 1.31802 1.25254 1.19021 0.75478 0.87277 1.16104 1.15899 0.74323 0.89979 0.91249 0.91326 0.90693 0.93949 0.89187 0.92216 0.88441 0.92183 0.88383 0.89092 0.93922 0.91355 0.90815 0.91197 0.90407 0.82197 0.80627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 1.93 7.96 -47.37 -0.38 1.55 16 2 C -0.07 0.10 2.11 36.00 0.08 0.18 16 3 Si 0.69 -1.89 31.11 -169.99 -5.29 -7.18 16 4 C -0.05 -0.07 5.78 -36.00 -0.21 -0.27 16 5 C -0.66 -1.41 5.60 -41.21 -0.23 -1.64 16 6 S 2.72 6.86 4.83 -107.50 -0.52 6.34 16 7 O -0.96 -5.00 16.68 -57.17 -0.95 -5.95 16 8 O -0.96 -4.36 16.58 -63.16 -1.05 -5.40 16 9 N -1.09 0.89 3.66 -4.89 -0.02 0.87 16 10 C 0.16 -0.15 2.66 -67.93 -0.18 -0.33 16 11 H 0.08 -0.03 7.82 -51.93 -0.41 -0.43 16 12 C -0.14 0.06 5.53 -26.73 -0.15 -0.08 16 13 C -0.11 0.07 4.97 -26.73 -0.13 -0.06 16 14 C 0.08 -0.07 1.94 -67.71 -0.13 -0.20 16 15 H 0.04 -0.01 8.14 -51.93 -0.42 -0.44 16 16 N -0.53 -0.06 4.59 -226.34 -1.04 -1.10 16 17 C 0.01 0.00 5.25 -3.71 -0.02 -0.02 16 18 C 0.06 0.02 7.01 37.21 0.26 0.28 16 19 O -0.39 -0.98 10.83 -35.23 -0.38 -1.36 16 20 C 0.06 0.03 7.01 37.21 0.26 0.29 16 21 C 0.01 0.00 5.34 -3.71 -0.02 -0.02 16 22 C -0.11 0.18 4.86 -26.76 -0.13 0.05 16 23 C -0.12 0.26 5.45 -26.75 -0.15 0.11 16 24 C -0.08 -0.13 9.70 -41.21 -0.40 -0.53 16 25 C -0.21 -0.13 11.23 29.04 0.33 0.19 16 26 S 0.13 0.13 20.77 -107.50 -2.23 -2.10 16 27 H 0.39 -3.30 8.74 45.56 0.40 -2.90 16 28 H 0.11 -0.21 7.89 -51.93 -0.41 -0.62 16 29 H -0.24 0.08 7.11 56.52 0.40 0.48 16 30 H -0.24 0.03 7.11 56.52 0.40 0.43 16 31 H 0.42 -1.21 7.69 -34.47 -0.27 -1.48 16 32 H 0.08 0.09 7.70 -51.93 -0.40 -0.31 16 33 H 0.07 -0.07 8.14 -51.93 -0.42 -0.49 16 34 H 0.07 -0.05 6.35 -51.93 -0.33 -0.38 16 35 H 0.07 0.00 8.14 -51.93 -0.42 -0.42 16 36 H 0.04 0.02 8.14 -51.93 -0.42 -0.41 16 37 H 0.09 -0.12 6.11 -51.93 -0.32 -0.44 16 38 H 0.06 0.01 8.14 -51.92 -0.42 -0.41 16 39 H 0.10 -0.10 8.14 -51.93 -0.42 -0.52 16 40 H 0.06 0.02 8.14 -51.93 -0.42 -0.40 16 41 H 0.10 -0.08 8.14 -51.92 -0.42 -0.50 16 42 H 0.09 -0.08 6.19 -51.93 -0.32 -0.40 16 43 H 0.04 0.03 8.14 -51.93 -0.42 -0.40 16 44 H 0.07 -0.13 6.30 -51.93 -0.33 -0.45 16 45 H 0.07 -0.05 8.14 -51.93 -0.42 -0.47 16 46 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 47 H 0.08 -0.16 8.14 -51.93 -0.42 -0.58 16 48 H 0.16 0.13 7.74 -52.48 -0.41 -0.28 16 49 H 0.18 -0.32 8.06 -52.49 -0.42 -0.74 16 LS Contribution 393.97 15.07 5.94 5.94 Total: 0.00 -9.44 393.97 -14.22 -23.66 By element: Atomic # 1 Polarization: -5.72 SS G_CDS: -7.48 Total: -13.20 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -0.82 Total: -2.05 kcal Atomic # 7 Polarization: 0.83 SS G_CDS: -1.06 Total: -0.23 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -2.76 Total: -11.17 kcal Atomic # 14 Polarization: -1.89 SS G_CDS: -5.29 Total: -7.18 kcal Atomic # 16 Polarization: 6.99 SS G_CDS: -2.75 Total: 4.24 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -9.44 -14.22 -23.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607746_14772022.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.786 kcal (2) G-P(sol) polarization free energy of solvation -9.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds