Wall clock time and date at job start Mon Mar 8 2021 10:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86302 * 109.47073 * 2 1 4 4 C 1.50695 * 109.47165 * 239.99962 * 2 1 3 5 5 C 1.33391 * 125.19962 * 317.11142 * 4 2 1 6 6 S 1.76197 * 122.54143 * 0.02562 * 5 4 2 7 7 O 1.42099 * 106.40119 * 180.78473 * 6 5 4 8 8 O 1.42099 * 106.40108 * 313.70412 * 6 5 4 9 9 N 1.65593 * 107.22198 * 67.24375 * 6 5 4 10 10 C 1.46501 * 119.99786 * 64.51007 * 9 6 5 11 11 H 1.08999 * 109.47604 * 335.62862 * 10 9 6 12 12 C 1.53001 * 109.47158 * 95.63019 * 10 9 6 13 13 C 1.53003 * 109.47182 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.47219 * 300.00402 * 13 12 10 15 15 H 1.08997 * 109.46454 * 299.99556 * 14 13 12 16 16 N 1.46897 * 109.46860 * 180.02562 * 14 13 12 17 17 C 1.47015 * 110.99908 * 183.63471 * 16 14 13 18 18 C 1.53094 * 109.26185 * 177.60717 * 17 16 14 19 19 O 1.43018 * 109.26180 * 56.84163 * 18 17 16 20 20 C 1.43014 * 113.73629 * 301.33628 * 19 18 17 21 21 C 1.47006 * 111.00487 * 59.99407 * 16 14 13 22 22 C 1.52994 * 109.47432 * 59.99945 * 14 13 12 23 23 C 1.53004 * 109.47297 * 215.62826 * 10 9 6 24 24 C 1.38428 * 114.91693 * 179.97438 * 5 4 2 25 25 C 1.33388 * 114.92144 * 0.02562 * 24 5 4 26 26 S 1.75879 * 109.59432 * 359.75674 * 25 24 5 27 27 H 0.96708 * 113.99714 * 300.00242 * 1 2 3 28 28 H 1.09001 * 109.47050 * 119.99124 * 2 1 3 29 29 H 1.48503 * 110.00334 * 178.68391 * 3 2 1 30 30 H 1.48504 * 109.99687 * 300.00031 * 3 2 1 31 31 H 0.96996 * 120.00787 * 244.51374 * 9 6 5 32 32 H 1.08991 * 109.46913 * 299.99933 * 12 10 9 33 33 H 1.08993 * 109.47125 * 60.00373 * 12 10 9 34 34 H 1.08992 * 109.47331 * 179.97438 * 13 12 10 35 35 H 1.09002 * 109.46757 * 59.99984 * 13 12 10 36 36 H 1.09002 * 109.50235 * 297.54100 * 17 16 14 37 37 H 1.09004 * 109.50623 * 57.66503 * 17 16 14 38 38 H 1.09009 * 109.50152 * 296.90875 * 18 17 16 39 39 H 1.08993 * 109.50938 * 176.78041 * 18 17 16 40 40 H 1.09001 * 109.50804 * 298.73075 * 20 19 18 41 41 H 1.09007 * 109.53944 * 178.62372 * 20 19 18 42 42 H 1.09000 * 109.51308 * 302.32849 * 21 16 14 43 43 H 1.09006 * 109.50455 * 62.45921 * 21 16 14 44 44 H 1.08993 * 109.47397 * 180.02562 * 22 14 13 45 45 H 1.08993 * 109.47284 * 59.99659 * 22 14 13 46 46 H 1.08994 * 109.47534 * 300.00490 * 23 10 9 47 47 H 1.09006 * 109.46751 * 59.99956 * 23 10 9 48 48 H 1.08007 * 122.53318 * 180.02562 * 24 5 4 49 49 H 1.08000 * 125.19725 * 180.02562 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2304 5 6 1.4347 -1.8484 -1.7178 6 16 0.0853 -2.6937 -0.9633 7 8 -0.1459 -3.8581 -1.7442 8 8 0.3658 -2.7348 0.4292 9 7 -1.2543 -1.7369 -1.1423 10 6 -1.7805 -1.4564 -2.4805 11 1 -0.9825 -1.5650 -3.2149 12 6 -2.9070 -2.4405 -2.8021 13 6 -3.4570 -2.1471 -4.1994 14 6 -4.0004 -0.7175 -4.2439 15 1 -4.7984 -0.6092 -3.5093 16 7 -4.5290 -0.4361 -5.5853 17 6 -4.9821 0.9585 -5.6911 18 6 -5.4684 1.2245 -7.1182 19 8 -6.5028 0.2928 -7.4456 20 6 -6.0958 -1.0751 -7.3535 21 6 -5.6159 -1.3645 -5.9288 22 6 -2.8740 0.2666 -3.9223 23 6 -2.3239 -0.0268 -2.5255 24 6 2.0590 -2.3144 -2.8621 25 6 3.0630 -1.5551 -3.3035 26 16 3.2577 -0.1624 -2.2472 27 1 -0.3933 0.4418 0.7651 28 1 1.7923 -0.5137 0.8901 29 1 3.5346 1.7704 0.0321 30 1 1.5614 2.4679 -1.2085 31 1 -1.6907 -1.3622 -0.3613 32 1 -2.5200 -3.4589 -2.7701 33 1 -3.7051 -2.3318 -2.0678 34 1 -4.2592 -2.8484 -4.4288 35 1 -2.6591 -2.2555 -4.9341 36 1 -5.7992 1.1298 -4.9903 37 1 -4.1548 1.6287 -5.4575 38 1 -4.6377 1.1054 -7.8139 39 1 -5.8583 2.2400 -7.1865 40 1 -5.2834 -1.2612 -8.0560 41 1 -6.9390 -1.7233 -7.5923 42 1 -5.2513 -2.3900 -5.8688 43 1 -6.4431 -1.2302 -5.2318 44 1 -3.2612 1.2849 -3.9535 45 1 -2.0761 0.1582 -4.6568 46 1 -3.1220 0.0819 -1.7911 47 1 -1.5213 0.6743 -2.2963 48 1 1.7561 -3.2239 -3.3597 49 1 3.6615 -1.7615 -4.1784 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_40_16607746_14772022.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:27:40 Heat of formation + Delta-G solvation = -96.085392 kcal Electronic energy + Delta-G solvation = -34259.175974 eV Core-core repulsion = 29827.954549 eV Total energy + Delta-G solvation = -4431.221425 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.121 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.04892 -39.60771 -39.39936 -38.38415 -37.40907 -36.92500 -36.73392 -33.95000 -32.61547 -32.00037 -31.41395 -29.66143 -27.51577 -26.79793 -25.37125 -24.32504 -23.05436 -22.84374 -21.88557 -21.36472 -20.92291 -19.93680 -18.94253 -18.63312 -18.16811 -17.99846 -17.79373 -17.16159 -17.08484 -16.31863 -16.01886 -15.97942 -15.94331 -15.75372 -15.44652 -15.25126 -15.07012 -14.99214 -14.62049 -14.47667 -14.30243 -14.06135 -13.81547 -13.75810 -13.57466 -13.35004 -13.22787 -13.12494 -12.90230 -12.78930 -12.72494 -12.43791 -12.35398 -12.27759 -12.17635 -12.11344 -12.02621 -11.88873 -11.46079 -11.37092 -11.12846 -10.75075 -10.65688 -10.22309 -10.17126 -9.83951 -9.38931 -5.20222 -0.69626 -0.52924 0.22704 0.56915 1.00076 1.12533 1.56790 1.85917 2.09678 2.67874 2.72433 2.94510 3.09778 3.43922 3.59896 3.66251 3.70138 3.90035 3.95931 4.00510 4.06460 4.14612 4.15952 4.18582 4.21761 4.28687 4.33443 4.34499 4.41008 4.46677 4.52669 4.57676 4.58407 4.64045 4.70017 4.79015 4.79870 4.82750 4.85838 4.93252 5.04610 5.07283 5.12923 5.15312 5.24498 5.26517 5.37717 5.51182 5.95920 6.03698 6.16738 6.35638 6.77529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.548 6.548 2 C -0.078 4.078 3 Si 0.777 3.223 4 C -0.058 4.058 5 C -0.675 4.675 6 S 2.731 3.269 7 O -0.994 6.994 8 O -0.979 6.979 9 N -1.070 6.070 10 C 0.160 3.840 11 H 0.072 0.928 12 C -0.135 4.135 13 C -0.108 4.108 14 C 0.088 3.912 15 H 0.043 0.957 16 N -0.541 5.541 17 C 0.017 3.983 18 C 0.059 3.941 19 O -0.409 6.409 20 C 0.060 3.940 21 C 0.017 3.983 22 C -0.111 4.111 23 C -0.108 4.108 24 C -0.095 4.095 25 C -0.206 4.206 26 S 0.122 5.878 27 H 0.417 0.583 28 H 0.116 0.884 29 H -0.271 1.271 30 H -0.269 1.269 31 H 0.431 0.569 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.037 0.963 37 H 0.102 0.898 38 H 0.058 0.942 39 H 0.109 0.891 40 H 0.059 0.941 41 H 0.108 0.892 42 H 0.098 0.902 43 H 0.036 0.964 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.162 0.838 49 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.404 6.403 2.368 6.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.189 4.189 3 Si 0.678 3.322 4 C -0.179 4.179 5 C -0.775 4.775 6 S 2.818 3.182 7 O -0.984 6.984 8 O -0.969 6.969 9 N -0.834 5.834 10 C 0.052 3.948 11 H 0.090 0.910 12 C -0.175 4.175 13 C -0.146 4.146 14 C -0.020 4.020 15 H 0.061 0.939 16 N -0.267 5.267 17 C -0.111 4.111 18 C -0.018 4.018 19 O -0.328 6.328 20 C -0.017 4.017 21 C -0.111 4.111 22 C -0.149 4.149 23 C -0.148 4.148 24 C -0.123 4.123 25 C -0.341 4.341 26 S 0.385 5.615 27 H 0.272 0.728 28 H 0.133 0.867 29 H -0.197 1.197 30 H -0.195 1.195 31 H 0.271 0.729 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.055 0.945 37 H 0.121 0.879 38 H 0.077 0.923 39 H 0.127 0.873 40 H 0.077 0.923 41 H 0.126 0.874 42 H 0.116 0.884 43 H 0.054 0.946 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.101 0.899 47 H 0.100 0.900 48 H 0.179 0.821 49 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 1.497 7.022 1.258 7.289 hybrid contribution -0.809 -1.315 0.155 1.552 sum 0.688 5.707 1.414 5.919 Atomic orbital electron populations 1.86324 1.14847 1.82651 1.52204 1.24649 0.87946 1.11805 0.94550 0.93462 0.78810 0.74323 0.85631 1.24086 0.98524 0.95884 0.99360 1.29953 1.25231 1.10562 1.11719 1.00638 0.72813 0.72577 0.72184 1.93546 1.85273 1.46706 1.72863 1.93517 1.84988 1.86817 1.31566 1.55027 1.43536 1.70268 1.14572 1.20753 0.95883 0.96019 0.82106 0.91014 1.22057 0.98690 0.99562 0.97226 1.21546 1.00903 0.95393 0.96791 1.21694 0.96397 0.95867 0.88048 0.93871 1.62260 1.33151 1.03148 1.28117 1.22846 1.00102 0.90639 0.97478 1.22808 0.90799 0.93588 0.94600 1.87970 1.38533 1.16598 1.89745 1.22781 1.00782 0.82667 0.95442 1.22830 0.92785 0.98434 0.97098 1.21609 0.97486 0.98854 0.96982 1.21700 1.01587 0.94510 0.96993 1.19965 0.95882 1.01796 0.94625 1.26185 1.04089 0.98368 1.05474 1.84510 1.32023 1.25621 1.19351 0.72845 0.86710 1.19713 1.19470 0.72921 0.91786 0.90323 0.91251 0.91550 0.94512 0.87941 0.92329 0.87302 0.92303 0.87429 0.88390 0.94576 0.90530 0.91651 0.89860 0.89963 0.82087 0.78520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 4.49 7.96 -137.37 -1.09 3.39 16 2 C -0.08 0.28 2.11 71.23 0.15 0.43 16 3 Si 0.78 -4.72 31.11 68.60 2.13 -2.59 16 4 C -0.06 -0.16 5.78 24.59 0.14 -0.02 16 5 C -0.68 -3.37 5.60 21.22 0.12 -3.25 16 6 S 2.73 16.04 4.83 -56.49 -0.27 15.76 16 7 O -0.99 -11.93 16.68 -128.00 -2.14 -14.07 16 8 O -0.98 -9.44 16.58 -122.27 -2.03 -11.47 16 9 N -1.07 1.83 3.66 -169.38 -0.62 1.21 16 10 C 0.16 -0.30 2.66 44.99 0.12 -0.18 16 11 H 0.07 0.00 7.82 -2.39 -0.02 -0.02 16 12 C -0.14 0.09 5.53 30.60 0.17 0.25 16 13 C -0.11 0.11 4.97 30.60 0.15 0.26 16 14 C 0.09 -0.17 1.94 44.92 0.09 -0.08 16 15 H 0.04 -0.06 8.14 -2.39 -0.02 -0.08 16 16 N -0.54 -0.08 4.59 -869.99 -4.00 -4.07 16 17 C 0.02 -0.01 5.25 86.31 0.45 0.44 16 18 C 0.06 0.04 7.01 72.01 0.50 0.54 16 19 O -0.41 -2.21 10.83 -148.98 -1.61 -3.83 16 20 C 0.06 0.08 7.01 72.02 0.50 0.58 16 21 C 0.02 0.00 5.34 86.32 0.46 0.46 16 22 C -0.11 0.42 4.86 30.58 0.15 0.57 16 23 C -0.11 0.60 5.45 30.58 0.17 0.76 16 24 C -0.09 -0.41 9.70 21.22 0.21 -0.21 16 25 C -0.21 -0.34 11.23 66.72 0.75 0.41 16 26 S 0.12 0.29 20.77 -56.49 -1.17 -0.89 16 27 H 0.42 -7.79 8.74 -74.05 -0.65 -8.44 16 28 H 0.12 -0.52 7.89 -2.39 -0.02 -0.54 16 29 H -0.27 0.14 7.11 99.48 0.71 0.85 16 30 H -0.27 0.14 7.11 99.48 0.71 0.84 16 31 H 0.43 -2.86 7.69 -96.75 -0.74 -3.60 16 32 H 0.06 0.22 7.70 -2.39 -0.02 0.20 16 33 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 34 H 0.07 -0.08 6.35 -2.39 -0.02 -0.10 16 35 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 36 H 0.04 0.01 8.14 -2.39 -0.02 0.00 16 37 H 0.10 -0.37 6.11 -2.39 -0.01 -0.39 16 38 H 0.06 0.04 8.14 -2.38 -0.02 0.02 16 39 H 0.11 -0.25 8.14 -2.39 -0.02 -0.27 16 40 H 0.06 0.07 8.14 -2.39 -0.02 0.05 16 41 H 0.11 -0.15 8.14 -2.38 -0.02 -0.17 16 42 H 0.10 -0.16 6.19 -2.39 -0.01 -0.17 16 43 H 0.04 0.05 8.14 -2.38 -0.02 0.03 16 44 H 0.08 -0.39 6.30 -2.39 -0.02 -0.41 16 45 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 46 H 0.08 -0.64 8.14 -2.39 -0.02 -0.66 16 47 H 0.08 -0.46 8.14 -2.38 -0.02 -0.48 16 48 H 0.16 0.53 7.74 -2.91 -0.02 0.50 16 49 H 0.20 -0.75 8.06 -2.91 -0.02 -0.78 16 Total: 0.00 -22.43 393.97 -7.04 -29.47 By element: Atomic # 1 Polarization: -13.53 SS G_CDS: -0.37 Total: -13.91 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 4.13 Total: 0.98 kcal Atomic # 7 Polarization: 1.76 SS G_CDS: -4.62 Total: -2.86 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -6.87 Total: -25.97 kcal Atomic # 14 Polarization: -4.72 SS G_CDS: 2.13 Total: -2.59 kcal Atomic # 16 Polarization: 16.32 SS G_CDS: -1.45 Total: 14.88 kcal Total: -22.43 -7.04 -29.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607746_14772022.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.613 kcal (2) G-P(sol) polarization free energy of solvation -22.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds