Wall clock time and date at job start Mon Mar 8 2021 10:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42900 * 1 3 3 Si 1.86309 * 109.46903 * 2 1 4 4 C 1.50699 * 109.47514 * 240.00187 * 2 1 3 5 5 C 1.33390 * 125.20296 * 300.00254 * 4 2 1 6 6 C 1.38425 * 114.92123 * 179.97438 * 5 4 2 7 7 S 1.76201 * 122.53578 * 180.02562 * 6 5 4 8 8 O 1.42108 * 106.40064 * 203.53851 * 7 6 5 9 9 O 1.42097 * 106.40578 * 336.45842 * 7 6 5 10 10 N 1.65601 * 107.21828 * 90.00174 * 7 6 5 11 11 C 1.46503 * 120.00058 * 64.99563 * 10 7 6 12 12 H 1.09000 * 109.47044 * 335.00372 * 11 10 7 13 13 C 1.53000 * 109.46909 * 94.99986 * 11 10 7 14 14 C 1.52993 * 109.47095 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.47345 * 300.00326 * 14 13 11 16 16 H 1.08997 * 109.46820 * 300.00011 * 15 14 13 17 17 N 1.46896 * 109.47028 * 179.97438 * 15 14 13 18 18 C 1.47020 * 110.99677 * 183.63630 * 17 15 14 19 19 C 1.53105 * 109.25762 * 177.60692 * 18 17 15 20 20 O 1.43013 * 109.25422 * 56.84561 * 19 18 17 21 21 C 1.43012 * 113.74324 * 301.32644 * 20 19 18 22 22 C 1.47010 * 111.00320 * 60.00132 * 17 15 14 23 23 C 1.53000 * 109.46920 * 59.99733 * 15 14 13 24 24 C 1.52996 * 109.46909 * 214.99928 * 11 10 7 25 25 C 1.33383 * 114.92174 * 359.97438 * 6 5 4 26 26 S 1.75887 * 109.59638 * 359.97438 * 25 6 5 27 27 H 0.96694 * 113.99875 * 60.00515 * 1 2 3 28 28 H 1.09004 * 109.47339 * 119.99911 * 2 1 3 29 29 H 1.48502 * 109.99843 * 60.00264 * 3 2 1 30 30 H 1.48499 * 109.99904 * 181.31974 * 3 2 1 31 31 H 1.07997 * 122.53530 * 0.23800 * 5 4 2 32 32 H 0.97002 * 119.99637 * 244.99717 * 10 7 6 33 33 H 1.08998 * 109.47229 * 300.00143 * 13 11 10 34 34 H 1.09010 * 109.46953 * 60.00137 * 13 11 10 35 35 H 1.08999 * 109.47544 * 180.02562 * 14 13 11 36 36 H 1.09006 * 109.47328 * 60.00026 * 14 13 11 37 37 H 1.08996 * 109.50541 * 297.53887 * 18 17 15 38 38 H 1.08998 * 109.50734 * 57.67192 * 18 17 15 39 39 H 1.09000 * 109.50425 * 296.90959 * 19 18 17 40 40 H 1.08995 * 109.50503 * 176.78002 * 19 18 17 41 41 H 1.08999 * 109.51013 * 298.74183 * 21 20 19 42 42 H 1.08999 * 109.54463 * 178.63254 * 21 20 19 43 43 H 1.08998 * 109.50691 * 302.32387 * 22 17 15 44 44 H 1.09000 * 109.50699 * 62.41054 * 22 17 15 45 45 H 1.08998 * 109.46859 * 180.02562 * 23 15 14 46 46 H 1.08997 * 109.47146 * 60.00479 * 23 15 14 47 47 H 1.09000 * 109.47630 * 300.00085 * 24 11 10 48 48 H 1.09002 * 109.46827 * 60.00499 * 24 11 10 49 49 H 1.08000 * 125.20529 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7566 0.0000 4 6 1.9314 -0.7103 -1.2304 5 6 1.6740 -1.9811 -1.5437 6 6 2.2441 -2.4171 -2.7274 7 16 2.0334 -4.0584 -3.3326 8 8 3.1359 -4.3137 -4.1921 9 8 1.7242 -4.8654 -2.2047 10 7 0.6833 -4.0578 -4.2915 11 6 0.6671 -3.2807 -5.5333 12 1 1.3802 -2.4598 -5.4575 13 6 1.0531 -4.1849 -6.7057 14 6 1.0356 -3.3735 -8.0027 15 6 -0.3683 -2.8106 -8.2333 16 1 -1.0811 -3.6318 -8.3088 17 7 -0.3849 -2.0311 -9.4783 18 6 -1.6971 -1.4024 -9.6888 19 6 -1.6520 -0.5539 -10.9624 20 8 -1.2633 -1.3781 -12.0647 21 6 0.0103 -2.0056 -11.8935 22 6 -0.0180 -2.8688 -10.6294 23 6 -0.7542 -1.9065 -7.0609 24 6 -0.7365 -2.7174 -5.7642 25 6 2.9640 -1.5002 -3.3756 26 16 2.9449 0.0101 -2.4744 27 1 -0.3933 0.4416 -0.7650 28 1 1.7924 -0.5138 0.8900 29 1 1.5614 2.4679 1.2085 30 1 3.5345 1.7704 -0.0321 31 1 1.0633 -2.6201 -0.9231 32 1 -0.0969 -4.5720 -4.0309 33 1 2.0530 -4.5862 -6.5412 34 1 0.3399 -5.0058 -6.7815 35 1 1.3101 -4.0177 -8.8380 36 1 1.7484 -2.5523 -7.9272 37 1 -2.4584 -2.1753 -9.7932 38 1 -1.9371 -0.7669 -8.8364 39 1 -0.9286 0.2518 -10.8375 40 1 -2.6385 -0.1318 -11.1536 41 1 0.7821 -1.2421 -11.7957 42 1 0.2267 -2.6332 -12.7580 43 1 0.9676 -3.3037 -10.4636 44 1 -0.7521 -3.6657 -10.7483 45 1 -1.7545 -1.5059 -7.2250 46 1 -0.0414 -1.0853 -6.9854 47 1 -1.4496 -3.5383 -5.8400 48 1 -1.0114 -2.0733 -4.9289 49 1 3.4792 -1.6604 -4.3112 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_40_16607746_15065232.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 8 2021 10:27:47 Heat of formation + Delta-G solvation = -103.557451 kcal Electronic energy + Delta-G solvation = -33055.466781 eV Core-core repulsion = 28623.921344 eV Total energy + Delta-G solvation = -4431.545437 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 389.121 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -41.15430 -39.62194 -39.51323 -38.21487 -37.61814 -36.90871 -36.85158 -34.15264 -32.72668 -31.89997 -31.56557 -29.82138 -27.30380 -26.89586 -25.46352 -24.97258 -23.22976 -23.03713 -21.61377 -21.40887 -21.07145 -20.12046 -19.20619 -18.55119 -18.07254 -17.91157 -17.68231 -17.35929 -17.07886 -16.40313 -16.20911 -16.04928 -16.02437 -15.78007 -15.51476 -15.46988 -15.31634 -14.99290 -14.75553 -14.40236 -14.27985 -14.18243 -13.98108 -13.94234 -13.73291 -13.43846 -13.18002 -13.06259 -12.99219 -12.91172 -12.58893 -12.54423 -12.48538 -12.39028 -12.30802 -12.26080 -12.22471 -11.73672 -11.61501 -11.46867 -11.30777 -10.77742 -10.65281 -10.55086 -10.24150 -9.92484 -9.46326 -5.30624 -0.78276 -0.53570 0.24572 0.51295 0.96295 1.07260 1.44984 1.77448 1.98142 2.59187 2.69780 2.89782 3.17224 3.31760 3.41696 3.46922 3.55730 3.74416 3.80790 3.84838 3.86292 3.97310 3.97590 4.03862 4.14336 4.17204 4.17699 4.27640 4.29929 4.32426 4.33989 4.38269 4.46011 4.56891 4.61013 4.62281 4.69510 4.74476 4.84484 4.84990 4.89981 4.95214 4.99347 5.01207 5.02039 5.07629 5.16704 5.29811 5.81987 5.87563 5.92252 6.15513 6.33618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.532 6.532 2 C -0.027 4.027 3 Si 0.655 3.345 4 C -0.229 4.229 5 C -0.042 4.042 6 C -0.686 4.686 7 S 2.707 3.293 8 O -0.950 6.950 9 O -0.953 6.953 10 N -1.111 6.111 11 C 0.155 3.845 12 H 0.084 0.916 13 C -0.138 4.138 14 C -0.112 4.112 15 C 0.082 3.918 16 H 0.044 0.956 17 N -0.533 5.533 18 C 0.014 3.986 19 C 0.063 3.937 20 O -0.386 6.386 21 C 0.063 3.937 22 C 0.014 3.986 23 C -0.113 4.113 24 C -0.123 4.123 25 C -0.088 4.088 26 S 0.160 5.840 27 H 0.380 0.620 28 H 0.127 0.873 29 H -0.231 1.231 30 H -0.237 1.237 31 H 0.157 0.843 32 H 0.421 0.579 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.042 0.958 38 H 0.091 0.909 39 H 0.060 0.940 40 H 0.098 0.902 41 H 0.060 0.940 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.043 0.957 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.072 0.928 48 H 0.076 0.924 49 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.383 4.521 -2.921 5.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.337 6.337 2 C -0.141 4.141 3 Si 0.554 3.446 4 C -0.347 4.347 5 C -0.071 4.071 6 C -0.785 4.785 7 S 2.793 3.207 8 O -0.940 6.940 9 O -0.943 6.943 10 N -0.870 5.870 11 C 0.048 3.952 12 H 0.102 0.898 13 C -0.178 4.178 14 C -0.150 4.150 15 C -0.026 4.026 16 H 0.062 0.938 17 N -0.258 5.258 18 C -0.114 4.114 19 C -0.014 4.014 20 O -0.304 6.304 21 C -0.014 4.014 22 C -0.114 4.114 23 C -0.151 4.151 24 C -0.163 4.163 25 C -0.227 4.227 26 S 0.424 5.576 27 H 0.228 0.772 28 H 0.144 0.856 29 H -0.154 1.154 30 H -0.161 1.161 31 H 0.174 0.826 32 H 0.256 0.744 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.116 0.884 41 H 0.079 0.921 42 H 0.116 0.884 43 H 0.109 0.891 44 H 0.061 0.939 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.091 0.909 48 H 0.094 0.906 49 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -0.234 6.034 -2.112 6.397 hybrid contribution -1.439 -2.113 0.728 2.659 sum -1.673 3.920 -1.384 4.481 Atomic orbital electron populations 1.86549 1.16443 1.81625 1.49105 1.24465 0.85302 1.09202 0.95086 0.95143 0.82180 0.77343 0.89904 1.25074 1.07705 0.98962 1.02925 1.19597 0.98371 0.94728 0.94367 1.30057 1.14147 1.26503 1.07831 1.01697 0.73064 0.72969 0.72940 1.93615 1.50881 1.83089 1.66410 1.93616 1.84034 1.65595 1.51024 1.55645 1.34664 1.62522 1.34163 1.20838 0.98583 0.92824 0.82916 0.89776 1.22095 1.03578 0.98587 0.93555 1.21601 0.96276 0.99970 0.97173 1.21726 0.97286 0.94432 0.89109 0.93762 1.62249 1.28595 1.32836 1.02094 1.22867 0.90157 0.98886 0.99536 1.22679 1.01106 0.92542 0.85092 1.88013 1.36553 1.64379 1.41487 1.22677 0.85830 0.95998 0.96897 1.22859 1.02077 0.95345 0.91143 1.21617 1.02463 0.98364 0.92688 1.21824 0.95891 1.00438 0.98132 1.25937 0.98128 0.95893 1.02695 1.84387 1.46838 1.12505 1.13894 0.77201 0.85637 1.15372 1.16125 0.82564 0.74421 0.89737 0.91090 0.91163 0.90547 0.93933 0.89111 0.92161 0.88413 0.92145 0.88380 0.89096 0.93901 0.91072 0.90499 0.90946 0.90550 0.79722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 0.48 12.86 -35.23 -0.45 0.02 16 2 C -0.03 0.03 2.96 36.01 0.11 0.13 16 3 Si 0.66 -1.16 30.97 -169.99 -5.26 -6.43 16 4 C -0.23 0.12 5.72 -36.00 -0.21 -0.08 16 5 C -0.04 -0.02 9.56 -41.21 -0.39 -0.41 16 6 C -0.69 0.00 5.73 -41.21 -0.24 -0.23 16 7 S 2.71 2.39 5.71 -107.50 -0.61 1.77 16 8 O -0.95 -3.08 16.90 -57.17 -0.97 -4.04 16 9 O -0.95 -4.06 17.63 -57.17 -1.01 -5.07 16 10 N -1.11 2.43 5.47 -4.89 -0.03 2.40 16 11 C 0.16 -0.43 2.65 -67.93 -0.18 -0.61 16 12 H 0.08 -0.30 7.35 -51.93 -0.38 -0.68 16 13 C -0.14 0.27 5.53 -26.73 -0.15 0.12 16 14 C -0.11 0.25 4.97 -26.73 -0.13 0.11 16 15 C 0.08 -0.17 1.94 -67.71 -0.13 -0.31 16 16 H 0.04 -0.06 8.14 -51.93 -0.42 -0.48 16 17 N -0.53 0.59 4.59 -226.33 -1.04 -0.45 16 18 C 0.01 -0.02 5.25 -3.70 -0.02 -0.04 16 19 C 0.06 -0.04 7.01 37.21 0.26 0.22 16 20 O -0.39 -0.69 10.83 -35.23 -0.38 -1.07 16 21 C 0.06 -0.02 7.01 37.21 0.26 0.24 16 22 C 0.01 -0.01 5.34 -3.71 -0.02 -0.03 16 23 C -0.11 0.37 4.86 -26.76 -0.13 0.24 16 24 C -0.12 0.46 5.45 -26.76 -0.15 0.32 16 25 C -0.09 0.11 10.20 29.04 0.30 0.40 16 26 S 0.16 -0.27 20.58 -107.50 -2.21 -2.48 16 27 H 0.38 -1.87 8.70 45.56 0.40 -1.48 16 28 H 0.13 -0.08 7.96 -51.93 -0.41 -0.50 16 29 H -0.23 -0.22 7.11 56.52 0.40 0.18 16 30 H -0.24 -0.09 7.11 56.52 0.40 0.31 16 31 H 0.16 0.07 7.97 -52.49 -0.42 -0.34 16 32 H 0.42 -1.55 8.84 -34.47 -0.30 -1.86 16 33 H 0.08 -0.05 7.64 -51.93 -0.40 -0.45 16 34 H 0.07 -0.15 8.14 -51.92 -0.42 -0.57 16 35 H 0.07 -0.14 6.35 -51.93 -0.33 -0.47 16 36 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 37 H 0.04 -0.02 8.14 -51.93 -0.42 -0.44 16 38 H 0.09 -0.24 6.11 -51.93 -0.32 -0.56 16 39 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 40 H 0.10 -0.18 8.14 -51.93 -0.42 -0.60 16 41 H 0.06 -0.03 8.14 -51.93 -0.42 -0.46 16 42 H 0.10 -0.15 8.14 -51.93 -0.42 -0.57 16 43 H 0.09 -0.17 6.19 -51.93 -0.32 -0.50 16 44 H 0.04 -0.01 8.14 -51.93 -0.42 -0.43 16 45 H 0.07 -0.24 6.30 -51.93 -0.33 -0.57 16 46 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 47 H 0.07 -0.27 8.14 -51.93 -0.42 -0.70 16 48 H 0.08 -0.32 8.14 -51.93 -0.42 -0.74 16 49 H 0.19 -0.59 8.00 -52.49 -0.42 -1.01 16 LS Contribution 403.05 15.07 6.07 6.07 Total: 0.00 -9.60 403.05 -14.22 -23.82 By element: Atomic # 1 Polarization: -7.12 SS G_CDS: -7.50 Total: -14.63 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: -0.82 Total: 0.08 kcal Atomic # 7 Polarization: 3.02 SS G_CDS: -1.07 Total: 1.95 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -2.81 Total: -10.16 kcal Atomic # 14 Polarization: -1.16 SS G_CDS: -5.26 Total: -6.43 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.83 Total: -0.71 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -9.60 -14.22 -23.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_40_16607746_15065232.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.740 kcal (2) G-P(sol) polarization free energy of solvation -9.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds